Wall clock time and date at job start Tue Mar 31 2020 20:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 117.00227 * 2 1 4 4 O 1.20829 * 119.99842 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00339 * 180.02562 * 3 2 1 6 6 C 1.50696 * 109.47192 * 180.02562 * 5 3 2 7 7 C 1.38271 * 119.93824 * 264.71977 * 6 5 3 8 8 C 1.38099 * 120.09391 * 179.76519 * 7 6 5 9 9 C 1.38914 * 119.97564 * 0.53319 * 8 7 6 10 10 N 1.39927 * 120.05273 * 179.69624 * 9 8 7 11 11 C 1.34780 * 119.99812 * 213.31871 * 10 9 8 12 12 O 1.21283 * 120.00003 * 5.28044 * 11 10 9 13 13 C 1.50699 * 119.99591 * 185.27813 * 11 10 9 14 14 H 1.08996 * 109.47509 * 320.00091 * 13 11 10 15 15 N 1.46905 * 109.46689 * 200.00187 * 13 11 10 16 16 C 1.52999 * 109.47222 * 80.00806 * 13 11 10 17 17 C 1.52995 * 109.47434 * 184.99587 * 16 13 11 18 18 C 1.50694 * 109.47246 * 179.97438 * 17 16 13 19 19 H 1.08002 * 120.00492 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99914 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00040 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00045 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46961 * 89.99798 * 22 20 18 24 24 H 1.48499 * 109.47337 * 210.00183 * 22 20 18 25 25 H 1.48503 * 109.47028 * 330.00214 * 22 20 18 26 26 C 1.38801 * 119.88911 * 359.72611 * 9 8 7 27 27 C 1.38359 * 119.90256 * 359.97438 * 26 9 8 28 28 F 1.35106 * 119.98811 * 180.02562 * 27 26 9 29 29 H 1.08997 * 109.47267 * 300.00678 * 1 2 3 30 30 H 1.09003 * 109.46527 * 60.00137 * 1 2 3 31 31 H 1.09003 * 109.47078 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46788 * 300.00169 * 5 3 2 33 33 H 1.08997 * 109.46980 * 59.99599 * 5 3 2 34 34 H 1.07998 * 119.95471 * 0.02819 * 7 6 5 35 35 H 1.07996 * 120.01427 * 180.26020 * 8 7 6 36 36 H 0.96998 * 119.99762 * 33.32872 * 10 9 8 37 37 H 1.00901 * 110.99957 * 300.00348 * 15 13 11 38 38 H 1.00902 * 110.99657 * 63.95856 * 15 13 11 39 39 H 1.09008 * 109.46670 * 304.99920 * 16 13 11 40 40 H 1.09003 * 109.47275 * 64.99313 * 16 13 11 41 41 H 1.08996 * 109.47088 * 299.99996 * 17 16 13 42 42 H 1.09003 * 109.47113 * 59.99627 * 17 16 13 43 43 H 0.97005 * 119.99559 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.05262 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 3.9937 2.7200 0.0002 7 6 4.2946 3.3513 -1.1927 8 6 4.6818 4.6769 -1.1962 9 6 4.7799 5.3744 0.0011 10 7 5.1782 6.7158 0.0000 11 6 5.9014 7.2049 1.0269 12 8 6.2885 6.4620 1.9040 13 6 6.2289 8.6747 1.0850 14 1 6.4751 9.0320 0.0852 15 7 7.3772 8.8854 1.9768 16 6 5.0202 9.4458 1.6191 17 6 5.3072 10.9475 1.5614 18 6 4.1164 11.7070 2.0869 19 1 3.2425 11.1722 2.4284 20 6 4.1426 13.0848 2.1318 21 7 5.2070 13.7361 1.7165 22 14 2.6668 14.0263 2.7838 23 1 2.8131 14.2234 4.2484 24 1 2.5866 15.3482 2.1120 25 1 1.4274 13.2557 2.5095 26 6 4.4829 4.7384 1.1986 27 6 4.0894 3.4119 1.1959 28 9 3.7994 2.7913 2.3604 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 3.9565 0.7806 0.8892 33 1 3.9558 0.7809 -0.8908 34 1 4.2226 2.8081 -2.1233 35 1 4.9124 5.1698 -2.1290 36 1 4.9338 7.2937 -0.7397 37 1 7.1739 8.5620 2.9107 38 1 8.2052 8.4391 1.6117 39 1 4.1460 9.2191 1.0087 40 1 4.8288 9.1519 2.6512 41 1 6.1813 11.1741 2.1718 42 1 5.4986 11.2414 0.5294 43 1 5.2252 14.7055 1.7478 44 1 4.5579 5.2783 2.1309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424206521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:06 Heat of formation + Delta-G solvation = -149.691014 kcal Electronic energy + Delta-G solvation = -28331.922938 eV Core-core repulsion = 23970.487669 eV Total energy + Delta-G solvation = -4361.435269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.10056 -40.95259 -40.60859 -38.83928 -36.85771 -35.52218 -35.09499 -32.87579 -32.41207 -30.85700 -30.18275 -28.84994 -27.33642 -26.16112 -24.06611 -23.32716 -22.40791 -21.08086 -20.75984 -19.96753 -18.41638 -18.02946 -17.57203 -17.05048 -16.92499 -16.37928 -16.28521 -15.97013 -15.80417 -15.52969 -15.48009 -14.68904 -14.53650 -14.32137 -14.06090 -13.92035 -13.75112 -13.64478 -13.41158 -12.74972 -12.53689 -12.45846 -12.37902 -12.11394 -12.07156 -11.72144 -11.61297 -11.17198 -10.92331 -10.91001 -10.75284 -10.60753 -10.47276 -10.24577 -9.86093 -9.44089 -9.05295 -9.02118 -8.47695 -8.36880 -8.27520 -5.96896 -3.99187 0.74552 0.99424 1.86585 2.30246 2.54729 2.89334 3.33701 3.39813 3.40112 3.43141 4.00490 4.12261 4.36657 4.47688 4.55679 4.63841 4.72429 4.73410 4.81348 4.88219 4.91468 4.97139 5.14944 5.18814 5.29274 5.37277 5.39969 5.68049 5.70092 5.73311 5.94624 5.99592 6.02262 6.19963 6.34331 6.55312 6.70119 6.99673 7.14973 7.37454 7.39356 7.67445 7.71952 7.90662 7.99759 8.08366 8.44267 9.08474 9.64302 11.13870 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015341 B = 0.002167 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.780082 B =12919.312357 C =13941.447909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.459 3.541 4 O -0.494 6.494 5 C -0.066 4.066 6 C -0.141 4.141 7 C -0.055 4.055 8 C -0.159 4.159 9 C 0.191 3.809 10 N -0.673 5.673 11 C 0.483 3.517 12 O -0.529 6.529 13 C 0.082 3.918 14 H 0.103 0.897 15 N -0.805 5.805 16 C -0.097 4.097 17 C 0.032 3.968 18 C -0.523 4.523 19 H 0.052 0.948 20 C 0.058 3.942 21 N -0.892 5.892 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.158 4.158 27 C 0.139 3.861 28 F -0.135 7.135 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.418 0.582 37 H 0.349 0.651 38 H 0.336 0.664 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.036 0.964 42 H 0.014 0.986 43 H 0.260 0.740 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.183 -28.374 -8.906 29.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.301 3.699 4 O -0.380 6.380 5 C -0.104 4.104 6 C -0.143 4.143 7 C -0.073 4.073 8 C -0.179 4.179 9 C 0.095 3.905 10 N -0.319 5.319 11 C 0.270 3.730 12 O -0.404 6.404 13 C -0.034 4.034 14 H 0.121 0.879 15 N -0.333 5.333 16 C -0.135 4.135 17 C -0.005 4.005 18 C -0.562 4.562 19 H 0.070 0.930 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.717 3.283 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.179 4.179 27 C 0.119 3.881 28 F -0.113 7.113 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.255 0.745 37 H 0.164 0.836 38 H 0.148 0.852 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.144 -27.552 -8.349 28.869 hybrid contribution -1.262 -0.240 0.300 1.319 sum -3.405 -27.792 -8.050 29.134 Atomic orbital electron populations 1.23282 0.76096 1.03711 1.02754 1.86486 1.23635 1.33402 1.84351 1.23688 0.91912 0.81496 0.72816 1.90725 1.66956 1.36231 1.44058 1.20126 0.88141 0.94962 1.07134 1.19148 1.07210 0.95195 0.92717 1.20601 0.96294 0.93871 0.96576 1.20920 1.05314 0.94526 0.97164 1.17551 0.94730 0.84951 0.93247 1.43919 1.53691 1.08944 1.25317 1.23220 0.75933 0.93541 0.80265 1.90679 1.51855 1.60211 1.37646 1.21913 0.95270 0.86396 0.99868 0.87946 1.58985 1.03875 1.64485 1.05927 1.21710 0.92329 0.99657 0.99853 1.19015 0.97526 0.86428 0.97566 1.21258 1.01326 0.91408 1.42187 0.92963 1.24991 0.95917 0.97869 0.95553 1.69971 1.28150 1.07675 1.47314 0.86642 0.83216 0.79331 0.79072 1.20697 1.21266 1.19992 1.21059 1.03050 0.93810 1.00005 1.17198 0.99238 0.90837 0.80856 1.91494 1.90857 1.82378 1.46608 0.91786 0.91806 0.88017 0.86528 0.86160 0.84583 0.84623 0.74497 0.83630 0.85234 0.92616 0.92654 0.94583 0.96774 0.93068 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.12 10.57 -39.26 -0.41 -3.53 16 3 C 0.46 4.61 7.95 36.01 0.29 4.90 16 4 O -0.49 -6.70 15.78 -18.75 -0.30 -6.99 16 5 C -0.07 -0.50 5.71 -29.03 -0.17 -0.67 16 6 C -0.14 -1.44 4.38 -104.52 -0.46 -1.90 16 7 C -0.05 -0.48 9.67 -39.62 -0.38 -0.86 16 8 C -0.16 -1.51 9.96 -39.38 -0.39 -1.90 16 9 C 0.19 2.36 6.28 -83.70 -0.53 1.83 16 10 N -0.67 -8.06 5.34 -9.87 -0.05 -8.11 16 11 C 0.48 7.06 6.81 -10.98 -0.07 6.99 16 12 O -0.53 -9.03 13.94 5.55 0.08 -8.96 16 13 C 0.08 1.27 3.15 -68.86 -0.22 1.05 16 14 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 15 N -0.80 -12.71 8.44 -5.65 -0.05 -12.76 16 16 C -0.10 -1.88 4.78 -26.73 -0.13 -2.01 16 17 C 0.03 0.79 4.86 -27.89 -0.14 0.65 16 18 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 19 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 22 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 26 C -0.16 -2.24 8.63 -39.33 -0.34 -2.58 16 27 C 0.14 1.80 7.24 -39.45 -0.29 1.51 16 28 F -0.13 -1.83 16.56 2.25 0.04 -1.80 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.12 0.76 7.79 -51.93 -0.40 0.36 16 33 H 0.12 0.51 8.05 -51.93 -0.42 0.09 16 34 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.42 3.87 8.82 -40.82 -0.36 3.51 16 37 H 0.35 5.62 8.58 -39.29 -0.34 5.28 16 38 H 0.34 4.53 9.06 -39.29 -0.36 4.18 16 39 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.15 2.39 6.42 -52.49 -0.34 2.06 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -35.31 384.92 -7.30 -42.61 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.96 Total: 8.00 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -2.16 Total: -5.05 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.64 Total: -46.73 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.63 Total: -19.48 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.31 -7.30 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424206521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.082 kcal (2) G-P(sol) polarization free energy of solvation -35.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds