Wall clock time and date at job start Tue Mar 31 2020 20:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99543 * 2 1 4 4 H 1.48500 * 109.47574 * 270.00062 * 3 2 1 5 5 H 1.48500 * 109.47348 * 30.00420 * 3 2 1 6 6 H 1.48499 * 109.47100 * 149.99731 * 3 2 1 7 7 C 1.38808 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99996 * 194.47160 * 7 2 1 9 9 N 1.36933 * 120.00124 * 14.46964 * 7 2 1 10 10 C 1.46536 * 119.74083 * 205.18165 * 9 7 2 11 11 C 1.53146 * 108.25325 * 236.44959 * 10 9 7 12 12 C 1.53066 * 109.20716 * 301.58215 * 11 10 9 13 13 H 1.09005 * 114.44187 * 275.05122 * 12 11 10 14 14 C 1.54404 * 111.60831 * 142.38656 * 12 11 10 15 15 N 1.47281 * 87.48565 * 274.18710 * 14 12 11 16 16 C 1.34781 * 136.54242 * 151.46135 * 15 14 12 17 17 O 1.21499 * 120.00617 * 179.62775 * 16 15 14 18 18 C 1.48240 * 119.99706 * 359.62113 * 16 15 14 19 19 C 1.40572 * 119.74857 * 179.97438 * 18 16 15 20 20 N 1.31268 * 120.57049 * 180.02562 * 19 18 16 21 21 C 1.33783 * 119.80925 * 359.97438 * 20 19 18 22 22 C 1.40536 * 121.00912 * 179.97438 * 21 20 19 23 23 C 1.36076 * 119.75695 * 180.27744 * 22 21 20 24 24 C 1.39486 * 121.01134 * 359.49284 * 23 22 21 25 25 C 1.35987 * 120.98370 * 0.51026 * 24 23 22 26 26 C 1.40817 * 119.69648 * 359.75828 * 25 24 23 27 27 N 1.32170 * 119.74541 * 0.02562 * 18 16 15 28 28 C 1.46459 * 86.92082 * 331.20012 * 15 14 12 29 29 H 1.09002 * 111.44463 * 276.61667 * 28 15 14 30 30 C 1.45698 * 119.73953 * 25.20941 * 9 7 2 31 31 H 0.97000 * 120.00560 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.71035 * 116.75709 * 10 9 7 33 33 H 1.09005 * 109.74259 * 356.16083 * 10 9 7 34 34 H 1.09001 * 109.51520 * 181.66170 * 11 10 9 35 35 H 1.08999 * 109.51752 * 61.49779 * 11 10 9 36 36 H 1.09004 * 113.51486 * 159.55924 * 14 12 11 37 37 H 1.08994 * 113.63559 * 28.83556 * 14 12 11 38 38 H 1.07994 * 119.71497 * 0.02562 * 19 18 16 39 39 H 1.08005 * 120.12317 * 0.02562 * 22 21 20 40 40 H 1.08000 * 119.49421 * 179.74599 * 23 22 21 41 41 H 1.08007 * 119.50362 * 180.24291 * 24 23 22 42 42 H 1.07999 * 120.14830 * 179.72515 * 25 24 23 43 43 H 1.09007 * 108.78499 * 19.09197 * 30 9 7 44 44 H 1.08996 * 108.78697 * 260.88979 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0646 -1.2169 0.2332 9 7 1.3583 -2.3691 -0.2974 10 6 1.8764 -3.6413 0.2128 11 6 2.1198 -4.5724 -0.9785 12 6 0.8075 -4.7667 -1.7421 13 1 0.1659 -5.5526 -1.3436 14 6 1.0408 -4.8284 -3.2671 15 7 0.9702 -3.3573 -3.2721 16 6 1.4821 -2.3557 -4.0146 17 8 1.2123 -1.2017 -3.7469 18 6 2.3746 -2.6621 -5.1579 19 6 2.9052 -1.6134 -5.9291 20 7 3.6967 -1.8664 -6.9453 21 6 4.0027 -3.1324 -7.2510 22 6 4.8471 -3.4320 -8.3337 23 6 5.1369 -4.7291 -8.6254 24 6 4.6166 -5.7717 -7.8586 25 6 3.7960 -5.5225 -6.8032 26 6 3.4682 -4.1935 -6.4729 27 7 2.6645 -3.9193 -5.4449 28 6 0.0869 -3.4746 -2.1097 29 1 -0.9438 -3.6634 -2.4098 30 6 0.1552 -2.3361 -1.1185 31 1 -0.4851 0.8400 0.0004 32 1 1.1480 -4.0907 0.8878 33 1 2.8131 -3.4710 0.7437 34 1 2.4783 -5.5371 -0.6193 35 1 2.8641 -4.1298 -1.6405 36 1 0.2264 -5.3050 -3.8128 37 1 2.0204 -5.2180 -3.5439 38 1 2.6596 -0.5909 -5.6835 39 1 5.2612 -2.6358 -8.9346 40 1 5.7830 -4.9547 -9.4609 41 1 4.8657 -6.7922 -8.1095 42 1 3.3972 -6.3403 -6.2213 43 1 0.1287 -1.3931 -1.6646 44 1 -0.7166 -2.3858 -0.4661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084408021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:56 Heat of formation + Delta-G solvation = 117.436717 kcal Electronic energy + Delta-G solvation = -29601.263183 eV Core-core repulsion = 25714.473418 eV Total energy + Delta-G solvation = -3886.789766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.63585 -40.41679 -38.18572 -37.11521 -35.28779 -34.93904 -32.13662 -31.20534 -30.87237 -30.09575 -28.93405 -26.92595 -25.79618 -24.62959 -23.79124 -22.88633 -22.43329 -21.12637 -20.46448 -18.80867 -18.50665 -17.77517 -17.29487 -16.30729 -15.85921 -15.70465 -15.51507 -15.23583 -14.99684 -14.59272 -14.18433 -13.99998 -13.73505 -13.46856 -13.29084 -13.19220 -12.70490 -12.38247 -12.18925 -12.09238 -12.05108 -11.93955 -11.82681 -11.74961 -11.42618 -11.05079 -10.64518 -10.62782 -10.43779 -10.15111 -10.01532 -9.80149 -9.75367 -9.27247 -9.17072 -8.97765 -8.86900 -8.28790 -8.13454 -6.56990 -5.63048 -3.05023 -0.13595 0.24770 1.64864 2.35614 3.07224 3.31625 3.50560 3.56243 3.58715 3.74485 3.91662 3.94958 4.04892 4.46759 4.58208 4.62995 4.71054 4.74512 4.86809 4.97619 5.12771 5.26796 5.46872 5.52790 5.55311 5.60292 5.60708 5.75290 5.76279 5.82144 5.91005 5.96604 6.01958 6.15655 6.17135 6.31825 6.40843 6.44610 6.52190 6.61930 6.81951 6.99939 7.03763 7.46572 7.51825 7.78912 7.95924 8.22270 8.56798 8.60207 9.38315 10.02410 10.49945 11.45118 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014166 B = 0.003878 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.128859 B = 7218.004099 C = 8398.398384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.012 3.988 3 Si 0.900 3.100 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.253 4.253 8 H 0.062 0.938 9 N -0.585 5.585 10 C 0.148 3.852 11 C -0.114 4.114 12 C -0.116 4.116 13 H 0.093 0.907 14 C 0.106 3.894 15 N -0.609 5.609 16 C 0.593 3.407 17 O -0.500 6.500 18 C 0.080 3.920 19 C 0.129 3.871 20 N -0.428 5.428 21 C 0.087 3.913 22 C -0.087 4.087 23 C -0.095 4.095 24 C -0.106 4.106 25 C -0.074 4.074 26 C 0.074 3.926 27 N -0.391 5.391 28 C 0.119 3.881 29 H 0.076 0.924 30 C 0.166 3.834 31 H 0.252 0.748 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.189 0.811 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.104 0.896 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 -15.319 -15.698 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.187 4.187 3 Si 0.730 3.270 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.382 4.382 8 H 0.080 0.920 9 N -0.308 5.308 10 C 0.022 3.978 11 C -0.153 4.153 12 C -0.135 4.135 13 H 0.111 0.889 14 C -0.017 4.017 15 N -0.343 5.343 16 C 0.379 3.621 17 O -0.373 6.373 18 C -0.077 4.077 19 C -0.046 4.046 20 N -0.142 5.142 21 C -0.038 4.038 22 C -0.106 4.106 23 C -0.115 4.115 24 C -0.126 4.126 25 C -0.094 4.094 26 C -0.052 4.052 27 N -0.109 5.109 28 C 0.016 3.984 29 H 0.094 0.906 30 C 0.039 3.961 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.206 0.794 39 H 0.158 0.842 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.159 0.841 43 H 0.122 0.878 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 6.111 -14.440 -15.769 22.238 hybrid contribution 0.384 0.833 -0.211 0.941 sum 6.494 -13.607 -15.980 21.970 Atomic orbital electron populations 1.70001 1.05181 1.25267 1.54404 1.24906 0.95255 0.98074 1.00431 0.86333 0.78886 0.83990 0.77781 1.21221 1.21870 1.20745 1.19103 0.91693 0.84616 1.42832 0.92018 1.43462 1.29788 1.01628 1.55875 1.20727 0.97366 0.87235 0.92505 1.21814 0.94881 0.99316 0.99322 1.22836 0.98730 0.97571 0.94412 0.88910 1.23391 1.02113 0.80618 0.95585 1.49186 1.47972 1.06548 1.30610 1.16922 0.80514 0.84313 0.80391 1.90906 1.59680 1.18642 1.68082 1.22753 0.97710 0.89993 0.97228 1.24063 0.90047 1.01689 0.88755 1.68847 1.10987 1.19678 1.14661 1.19822 0.97615 0.89651 0.96706 1.20817 0.96755 0.97505 0.95530 1.21056 0.98869 0.92177 0.99435 1.21006 0.96712 0.99995 0.94843 1.20874 0.97198 0.94147 0.97156 1.19686 0.96760 0.95272 0.93508 1.68712 1.09062 1.20439 1.12703 1.22777 0.92656 0.97246 0.85764 0.90594 1.20230 0.88978 0.96202 0.90641 0.93799 0.96231 0.92669 0.92671 0.92209 0.90668 0.89902 0.79433 0.84208 0.84676 0.84628 0.84088 0.87808 0.95043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 10.94 55.49 0.61 -26.70 16 2 C 0.01 0.35 4.94 -17.43 -0.09 0.26 16 3 Si 0.90 23.31 29.58 -169.99 -5.03 18.28 16 4 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.25 -7.25 9.53 -15.06 -0.14 -7.40 16 8 H 0.06 1.76 7.83 -52.48 -0.41 1.35 16 9 N -0.59 -14.97 3.03 -174.90 -0.53 -15.49 16 10 C 0.15 3.08 6.46 -3.95 -0.03 3.06 16 11 C -0.11 -1.93 5.71 -26.62 -0.15 -2.08 16 12 C -0.12 -1.79 4.57 -90.14 -0.41 -2.21 16 13 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 14 C 0.11 1.52 6.91 -11.36 -0.08 1.44 16 15 N -0.61 -11.37 3.33 -188.46 -0.63 -12.00 16 16 C 0.59 12.09 8.00 -12.15 -0.10 11.99 16 17 O -0.50 -12.17 15.56 5.37 0.08 -12.09 16 18 C 0.08 1.37 6.76 -82.73 -0.56 0.81 16 19 C 0.13 2.08 10.75 -16.91 -0.18 1.90 16 20 N -0.43 -6.46 10.45 -10.53 -0.11 -6.57 16 21 C 0.09 1.17 6.60 -84.70 -0.56 0.61 16 22 C -0.09 -0.86 9.98 -39.49 -0.39 -1.25 16 23 C -0.10 -0.69 9.95 -39.89 -0.40 -1.09 16 24 C -0.11 -0.76 9.95 -39.92 -0.40 -1.16 16 25 C -0.07 -0.72 9.99 -39.41 -0.39 -1.12 16 26 C 0.07 0.99 6.59 -84.79 -0.56 0.43 16 27 N -0.39 -5.98 8.15 -7.38 -0.06 -6.04 16 28 C 0.12 2.27 4.03 -77.68 -0.31 1.96 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 30 C 0.17 4.09 4.59 -5.43 -0.02 4.06 16 31 H 0.25 7.43 8.31 -40.82 -0.34 7.10 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 1.14 7.87 -51.93 -0.41 0.73 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.14 7.69 -51.93 -0.40 0.74 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.15 7.06 -51.93 -0.37 0.78 16 38 H 0.19 2.89 7.62 -52.49 -0.40 2.49 16 39 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 40 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 41 H 0.14 0.56 8.06 -52.48 -0.42 0.13 16 42 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.10 3.00 4.95 -51.93 -0.26 2.74 16 44 H 0.03 0.83 7.99 -51.93 -0.42 0.42 16 LS Contribution 359.94 15.07 5.42 5.42 Total: -1.00 -34.76 359.94 -10.61 -45.38 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.60 Total: -0.42 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: -4.77 Total: 10.23 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -0.72 Total: -66.80 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.08 Total: -12.09 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.03 Total: 18.28 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.76 -10.61 -45.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084408021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.812 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds