Wall clock time and date at job start Tue Mar 31 2020 20:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99543 * 2 1 4 4 H 1.48500 * 109.47574 * 270.00062 * 3 2 1 5 5 H 1.48500 * 109.47348 * 30.00420 * 3 2 1 6 6 H 1.48499 * 109.47100 * 149.99731 * 3 2 1 7 7 C 1.38808 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99996 * 194.47160 * 7 2 1 9 9 N 1.36933 * 120.00124 * 14.46964 * 7 2 1 10 10 C 1.46536 * 119.74083 * 205.18165 * 9 7 2 11 11 C 1.53146 * 108.25325 * 236.44959 * 10 9 7 12 12 C 1.53066 * 109.20716 * 301.58215 * 11 10 9 13 13 H 1.09005 * 114.44187 * 275.05122 * 12 11 10 14 14 C 1.54404 * 111.60831 * 142.38656 * 12 11 10 15 15 N 1.47281 * 87.48565 * 274.18710 * 14 12 11 16 16 C 1.34781 * 136.54242 * 151.46135 * 15 14 12 17 17 O 1.21499 * 120.00617 * 179.62775 * 16 15 14 18 18 C 1.48240 * 119.99706 * 359.62113 * 16 15 14 19 19 C 1.40572 * 119.74857 * 179.97438 * 18 16 15 20 20 N 1.31268 * 120.57049 * 180.02562 * 19 18 16 21 21 C 1.33783 * 119.80925 * 359.97438 * 20 19 18 22 22 C 1.40536 * 121.00912 * 179.97438 * 21 20 19 23 23 C 1.36076 * 119.75695 * 180.27744 * 22 21 20 24 24 C 1.39486 * 121.01134 * 359.49284 * 23 22 21 25 25 C 1.35987 * 120.98370 * 0.51026 * 24 23 22 26 26 C 1.40817 * 119.69648 * 359.75828 * 25 24 23 27 27 N 1.32170 * 119.74541 * 0.02562 * 18 16 15 28 28 C 1.46459 * 86.92082 * 331.20012 * 15 14 12 29 29 H 1.09002 * 111.44463 * 276.61667 * 28 15 14 30 30 C 1.45698 * 119.73953 * 25.20941 * 9 7 2 31 31 H 0.97000 * 120.00560 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.71035 * 116.75709 * 10 9 7 33 33 H 1.09005 * 109.74259 * 356.16083 * 10 9 7 34 34 H 1.09001 * 109.51520 * 181.66170 * 11 10 9 35 35 H 1.08999 * 109.51752 * 61.49779 * 11 10 9 36 36 H 1.09004 * 113.51486 * 159.55924 * 14 12 11 37 37 H 1.08994 * 113.63559 * 28.83556 * 14 12 11 38 38 H 1.07994 * 119.71497 * 0.02562 * 19 18 16 39 39 H 1.08005 * 120.12317 * 0.02562 * 22 21 20 40 40 H 1.08000 * 119.49421 * 179.74599 * 23 22 21 41 41 H 1.08007 * 119.50362 * 180.24291 * 24 23 22 42 42 H 1.07999 * 120.14830 * 179.72515 * 25 24 23 43 43 H 1.09007 * 108.78499 * 19.09197 * 30 9 7 44 44 H 1.08996 * 108.78697 * 260.88979 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0646 -1.2169 0.2332 9 7 1.3583 -2.3691 -0.2974 10 6 1.8764 -3.6413 0.2128 11 6 2.1198 -4.5724 -0.9785 12 6 0.8075 -4.7667 -1.7421 13 1 0.1659 -5.5526 -1.3436 14 6 1.0408 -4.8284 -3.2671 15 7 0.9702 -3.3573 -3.2721 16 6 1.4821 -2.3557 -4.0146 17 8 1.2123 -1.2017 -3.7469 18 6 2.3746 -2.6621 -5.1579 19 6 2.9052 -1.6134 -5.9291 20 7 3.6967 -1.8664 -6.9453 21 6 4.0027 -3.1324 -7.2510 22 6 4.8471 -3.4320 -8.3337 23 6 5.1369 -4.7291 -8.6254 24 6 4.6166 -5.7717 -7.8586 25 6 3.7960 -5.5225 -6.8032 26 6 3.4682 -4.1935 -6.4729 27 7 2.6645 -3.9193 -5.4449 28 6 0.0869 -3.4746 -2.1097 29 1 -0.9438 -3.6634 -2.4098 30 6 0.1552 -2.3361 -1.1185 31 1 -0.4851 0.8400 0.0004 32 1 1.1480 -4.0907 0.8878 33 1 2.8131 -3.4710 0.7437 34 1 2.4783 -5.5371 -0.6193 35 1 2.8641 -4.1298 -1.6405 36 1 0.2264 -5.3050 -3.8128 37 1 2.0204 -5.2180 -3.5439 38 1 2.6596 -0.5909 -5.6835 39 1 5.2612 -2.6358 -8.9346 40 1 5.7830 -4.9547 -9.4609 41 1 4.8657 -6.7922 -8.1095 42 1 3.3972 -6.3403 -6.2213 43 1 0.1287 -1.3931 -1.6646 44 1 -0.7166 -2.3858 -0.4661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084408021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:55 Heat of formation + Delta-G solvation = 93.191399 kcal Electronic energy + Delta-G solvation = -29602.314539 eV Core-core repulsion = 25714.473418 eV Total energy + Delta-G solvation = -3887.841122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.69248 -41.80170 -39.47909 -38.21376 -37.09200 -36.06832 -33.99549 -32.29027 -31.91984 -31.66113 -30.42558 -28.65175 -26.85612 -25.74240 -25.60796 -24.35713 -23.28484 -22.65193 -21.89699 -19.99987 -19.49191 -19.37692 -18.62538 -17.84649 -17.39911 -17.09799 -16.71765 -16.49615 -16.09861 -15.87239 -15.58817 -15.40680 -15.08404 -14.97243 -14.78311 -14.59509 -14.34979 -14.00954 -13.56979 -13.18400 -13.01753 -12.97543 -12.90358 -12.86113 -12.73346 -12.72114 -12.68935 -12.38323 -12.19299 -11.98096 -11.77389 -11.51192 -11.35322 -10.86029 -10.52121 -10.22320 -10.12976 -9.66653 -9.56073 -8.66768 -7.84645 -5.28079 -1.11646 -0.73073 0.74859 1.35192 1.35545 1.43695 1.46260 1.71178 2.11957 2.48767 2.65485 2.90802 2.92456 3.07216 3.29088 3.40535 3.48551 3.67365 3.72958 3.91788 3.96390 4.09316 4.17908 4.22853 4.35635 4.45730 4.48544 4.59536 4.68343 4.75041 4.76686 4.86384 4.91975 4.93649 5.05860 5.06810 5.12446 5.14041 5.31234 5.32679 5.41541 5.56833 5.67525 5.70370 5.82469 5.94283 6.40466 6.40686 6.80021 7.07709 7.20047 7.96782 8.35147 9.19669 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014166 B = 0.003878 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.128859 B = 7218.004099 C = 8398.398384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.041 4.041 3 Si 0.952 3.048 4 H -0.299 1.299 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.258 4.258 8 H 0.057 0.943 9 N -0.603 5.603 10 C 0.141 3.859 11 C -0.103 4.103 12 C -0.101 4.101 13 H 0.138 0.862 14 C 0.120 3.880 15 N -0.616 5.616 16 C 0.585 3.415 17 O -0.563 6.563 18 C 0.052 3.948 19 C 0.109 3.891 20 N -0.439 5.439 21 C 0.071 3.929 22 C -0.109 4.109 23 C -0.065 4.065 24 C -0.082 4.082 25 C -0.085 4.085 26 C 0.056 3.944 27 N -0.384 5.384 28 C 0.106 3.894 29 H 0.098 0.902 30 C 0.179 3.821 31 H 0.245 0.755 32 H 0.031 0.969 33 H 0.049 0.951 34 H 0.101 0.899 35 H 0.033 0.967 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.175 0.825 39 H 0.151 0.849 40 H 0.180 0.820 41 H 0.183 0.817 42 H 0.161 0.839 43 H 0.053 0.947 44 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.438 -20.598 -18.162 28.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.237 4.237 3 Si 0.781 3.219 4 H -0.227 1.227 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.389 4.389 8 H 0.075 0.925 9 N -0.326 5.326 10 C 0.016 3.984 11 C -0.142 4.142 12 C -0.119 4.119 13 H 0.156 0.844 14 C -0.001 4.001 15 N -0.349 5.349 16 C 0.372 3.628 17 O -0.441 6.441 18 C -0.103 4.103 19 C -0.064 4.064 20 N -0.153 5.153 21 C -0.055 4.055 22 C -0.128 4.128 23 C -0.085 4.085 24 C -0.102 4.102 25 C -0.104 4.104 26 C -0.072 4.072 27 N -0.102 5.102 28 C 0.002 3.998 29 H 0.115 0.885 30 C 0.053 3.947 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.119 0.881 35 H 0.052 0.948 36 H 0.128 0.872 37 H 0.111 0.889 38 H 0.192 0.808 39 H 0.169 0.831 40 H 0.198 0.802 41 H 0.200 0.800 42 H 0.179 0.821 43 H 0.072 0.928 44 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 8.343 -19.776 -18.197 28.140 hybrid contribution -0.125 2.225 0.367 2.259 sum 8.219 -17.551 -17.831 26.335 Atomic orbital electron populations 1.70156 1.06300 1.25163 1.56045 1.25567 0.96013 1.00841 1.01282 0.85493 0.78600 0.80882 0.76910 1.22716 1.21391 1.19017 1.19365 0.91706 0.86263 1.41531 0.92504 1.43704 1.29773 1.02510 1.56638 1.20957 0.97042 0.85999 0.94445 1.21688 0.95307 1.00050 0.97118 1.22888 0.97771 0.95905 0.95377 0.84448 1.23556 1.03992 0.77697 0.94865 1.49398 1.47189 1.08507 1.29819 1.17435 0.80501 0.83879 0.80949 1.90855 1.62064 1.21118 1.70080 1.22125 0.99495 0.91206 0.97445 1.23808 0.91542 1.01175 0.89899 1.68815 1.10879 1.21330 1.14235 1.20409 0.98234 0.88993 0.97872 1.21108 0.97061 0.99578 0.95073 1.21660 0.96834 0.90679 0.99306 1.21608 0.93804 1.02206 0.92560 1.21217 0.98068 0.92625 0.98510 1.20245 0.96735 0.97085 0.93105 1.68584 1.09185 1.19058 1.13348 1.22834 0.94773 0.96983 0.85170 0.88459 1.19837 0.87635 0.96566 0.90688 0.94593 0.95055 0.93245 0.88082 0.94768 0.87240 0.88911 0.80816 0.83102 0.80224 0.79998 0.82094 0.92842 0.98113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.91 10.94 21.65 0.24 -59.68 16 2 C -0.04 -2.56 4.94 84.86 0.42 -2.15 16 3 Si 0.95 50.57 29.58 68.60 2.03 52.60 16 4 H -0.30 -16.46 7.11 99.48 0.71 -15.75 16 5 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 6 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 7 C -0.26 -15.55 9.53 84.03 0.80 -14.75 16 8 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 9 N -0.60 -32.09 3.03 -707.25 -2.14 -34.24 16 10 C 0.14 5.80 6.46 86.42 0.56 6.36 16 11 C -0.10 -3.24 5.71 30.67 0.18 -3.06 16 12 C -0.10 -2.79 4.57 -10.48 -0.05 -2.84 16 13 H 0.14 2.73 8.14 -2.38 -0.02 2.71 16 14 C 0.12 3.08 6.91 81.21 0.56 3.65 16 15 N -0.62 -23.39 3.33 -868.46 -2.89 -26.28 16 16 C 0.59 25.62 8.00 86.90 0.70 26.32 16 17 O -0.56 -30.44 15.56 -3.71 -0.06 -30.49 16 18 C 0.05 1.88 6.76 42.32 0.29 2.17 16 19 C 0.11 3.88 10.75 85.35 0.92 4.80 16 20 N -0.44 -13.89 10.45 -187.22 -1.96 -15.85 16 21 C 0.07 1.84 6.60 40.34 0.27 2.11 16 22 C -0.11 -1.83 9.98 22.33 0.22 -1.60 16 23 C -0.06 -0.56 9.95 22.07 0.22 -0.34 16 24 C -0.08 -0.65 9.95 22.05 0.22 -0.43 16 25 C -0.09 -1.27 9.99 22.38 0.22 -1.05 16 26 C 0.06 1.41 6.59 40.48 0.27 1.68 16 27 N -0.38 -11.57 8.15 -177.27 -1.45 -13.01 16 28 C 0.11 4.07 4.03 38.70 0.16 4.23 16 29 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 30 C 0.18 9.34 4.59 85.91 0.39 9.74 16 31 H 0.24 15.45 8.31 -92.71 -0.77 14.68 16 32 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 2.05 7.87 -2.38 -0.02 2.03 16 34 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.03 1.26 7.69 -2.39 -0.02 1.24 16 36 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.09 2.26 7.06 -2.39 -0.02 2.24 16 38 H 0.17 6.32 7.62 -2.91 -0.02 6.30 16 39 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.18 0.07 8.06 -2.91 -0.02 0.05 16 41 H 0.18 -0.08 8.06 -2.91 -0.02 -0.10 16 42 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 43 H 0.05 3.34 4.95 -2.38 -0.01 3.33 16 44 H 0.00 0.06 7.99 -2.39 -0.02 0.04 16 Total: -1.00 -87.12 359.94 1.14 -85.98 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.03 Total: 6.14 kcal Atomic # 6 Polarization: 28.49 SS G_CDS: 6.33 Total: 34.82 kcal Atomic # 7 Polarization: -140.86 SS G_CDS: -8.20 Total: -149.06 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.06 Total: -30.49 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 2.03 Total: 52.60 kcal Total: -87.12 1.14 -85.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084408021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.173 kcal (2) G-P(sol) polarization free energy of solvation -87.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds