Wall clock time and date at job start Tue Mar 31 2020 20:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99810 * 2 1 4 4 H 1.48499 * 109.46956 * 270.00117 * 3 2 1 5 5 H 1.48495 * 109.47190 * 29.99874 * 3 2 1 6 6 H 1.48494 * 109.46991 * 150.00341 * 3 2 1 7 7 C 1.38799 * 120.00593 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00435 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99550 * 359.97438 * 7 2 1 10 10 C 1.80995 * 99.99974 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47436 * 180.02562 * 10 9 7 12 12 O 1.21274 * 119.99546 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00001 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99709 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47056 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.46947 * 185.28227 * 15 14 13 17 17 C 1.34771 * 120.00065 * 96.10287 * 16 15 14 18 18 O 1.21283 * 120.00249 * 185.89456 * 17 16 15 19 19 C 1.50700 * 119.99851 * 5.89221 * 17 16 15 20 20 C 1.54644 * 111.07309 * 275.99585 * 19 17 16 21 21 C 1.51100 * 104.72275 * 266.58781 * 20 19 17 22 22 C 1.30526 * 111.10808 * 343.56104 * 21 20 19 23 23 C 1.51110 * 111.10330 * 0.02562 * 22 21 20 24 24 C 1.46502 * 119.99911 * 276.09741 * 16 15 14 25 25 C 1.53003 * 117.49826 * 196.83961 * 24 16 15 26 26 C 1.52998 * 117.49682 * 128.18458 * 24 16 15 27 27 H 0.96997 * 120.00636 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47183 * 59.99970 * 10 9 7 29 29 H 1.09000 * 109.47483 * 300.00604 * 10 9 7 30 30 H 0.97004 * 120.00466 * 359.97438 * 13 11 10 31 31 H 1.09000 * 109.46834 * 60.00133 * 14 13 11 32 32 H 1.08994 * 109.47003 * 299.99369 * 14 13 11 33 33 H 1.09007 * 109.46553 * 65.28187 * 15 14 13 34 34 H 1.09001 * 109.47266 * 305.28668 * 15 14 13 35 35 H 1.09005 * 110.91577 * 39.98683 * 19 17 16 36 36 H 1.08995 * 110.38453 * 147.77383 * 20 19 17 37 37 H 1.08994 * 110.38352 * 25.39632 * 20 19 17 38 38 H 1.07999 * 124.44482 * 163.82642 * 21 20 19 39 39 H 1.08001 * 124.44717 * 179.97438 * 22 21 20 40 40 H 1.08999 * 110.38299 * 135.24450 * 23 22 21 41 41 H 1.08994 * 110.38643 * 257.50886 * 23 22 21 42 42 H 1.08995 * 115.55126 * 342.51331 * 24 16 15 43 43 H 1.09001 * 117.49440 * 0.02562 * 25 24 16 44 44 H 1.09001 * 117.49647 * 145.02095 * 25 24 16 45 45 H 1.09004 * 117.50134 * 214.98034 * 26 24 16 46 46 H 1.09007 * 117.50050 * 359.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0011 13 7 2.8443 -6.3430 -0.0008 14 6 2.3306 -7.7150 -0.0008 15 6 3.5027 -8.6985 -0.0009 16 7 2.9928 -10.0659 -0.1281 17 6 2.9429 -10.6567 -1.3385 18 8 2.4232 -11.7456 -1.4608 19 6 3.5329 -9.9641 -2.5398 20 6 2.5281 -8.9607 -3.1523 21 6 1.8129 -9.7427 -4.2294 22 6 2.4675 -10.8300 -4.5342 23 6 3.7283 -10.9549 -3.7107 24 6 2.5371 -10.7913 1.0603 25 6 2.3918 -12.3103 0.9484 26 6 1.1452 -11.4244 1.0110 27 1 -0.4851 0.8400 0.0004 28 1 3.1245 -3.7312 0.8895 29 1 3.1246 -3.7312 -0.8904 30 1 3.8011 -6.1834 -0.0004 31 1 1.7223 -7.8752 -0.8910 32 1 1.7218 -7.8750 0.8890 33 1 4.0573 -8.6028 0.9326 34 1 4.1626 -8.4772 -0.8398 35 1 4.4708 -9.4713 -2.2833 36 1 3.0562 -8.1118 -3.5865 37 1 1.8205 -8.6222 -2.3956 38 1 0.8842 -9.4394 -4.6899 39 1 2.1493 -11.5468 -5.2768 40 1 3.8365 -11.9720 -3.3340 41 1 4.5988 -10.6760 -4.3044 42 1 2.8725 -10.3868 2.0153 43 1 2.6357 -12.7699 -0.0095 44 1 2.6313 -12.9051 1.8298 45 1 0.5649 -11.4368 1.9337 46 1 0.5682 -11.3009 0.0945 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284725310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:29 Heat of formation + Delta-G solvation = -10.068919 kcal Electronic energy + Delta-G solvation = -26759.987515 eV Core-core repulsion = 22970.819890 eV Total energy + Delta-G solvation = -3789.167625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.19623 -39.22399 -38.43484 -36.58563 -35.63996 -33.79850 -32.45790 -30.25826 -29.71435 -28.50167 -27.89112 -25.51332 -24.22596 -23.27531 -22.55320 -21.62960 -20.56802 -19.05791 -18.89055 -17.94892 -17.53305 -16.98587 -16.31879 -16.14898 -16.06530 -15.61414 -15.25902 -14.86478 -14.82468 -14.26947 -14.09842 -13.93154 -13.32362 -13.31600 -13.08765 -12.86318 -12.58234 -12.53967 -12.38974 -12.31221 -11.91602 -11.71589 -11.59115 -11.44782 -11.34080 -11.21594 -11.08788 -11.05384 -10.79374 -10.60510 -9.85189 -9.75310 -9.51752 -9.15213 -9.09681 -8.96708 -8.75316 -8.27146 -6.53505 -6.24398 -3.95409 2.05693 2.18091 2.37074 3.02476 3.03486 3.20252 3.26286 3.30168 3.61792 3.72624 4.04775 4.17508 4.18718 4.28151 4.40734 4.55008 4.63973 4.74344 4.80803 4.86903 4.99414 5.06113 5.10391 5.10914 5.20588 5.26534 5.32614 5.40586 5.52083 5.53994 5.55318 5.58121 5.63179 5.76985 5.79236 5.83858 5.93552 6.08509 6.09761 6.31574 6.38144 6.46791 6.65124 6.96542 7.56376 7.58935 7.84303 8.32270 8.52958 9.20929 10.83006 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017321 B = 0.002258 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.127359 B =12398.145925 C =13268.756420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.514 6.514 13 N -0.738 5.738 14 C 0.100 3.900 15 C 0.099 3.901 16 N -0.582 5.582 17 C 0.528 3.472 18 O -0.521 6.521 19 C -0.121 4.121 20 C -0.091 4.091 21 C -0.169 4.169 22 C -0.157 4.157 23 C -0.083 4.083 24 C 0.067 3.933 25 C -0.190 4.190 26 C -0.184 4.184 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.784 -23.286 -2.681 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.387 6.387 13 N -0.394 5.394 14 C -0.025 4.025 15 C -0.025 4.025 16 N -0.313 5.313 17 C 0.317 3.683 18 O -0.397 6.397 19 C -0.142 4.142 20 C -0.129 4.129 21 C -0.187 4.187 22 C -0.175 4.175 23 C -0.120 4.120 24 C -0.037 4.037 25 C -0.227 4.227 26 C -0.222 4.222 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.232 0.768 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.147 0.853 43 H 0.151 0.849 44 H 0.107 0.893 45 H 0.115 0.885 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.340 -24.095 -2.736 25.986 hybrid contribution 2.320 1.540 0.114 2.786 sum 11.659 -22.555 -2.622 25.526 Atomic orbital electron populations 1.70008 1.05966 1.27507 1.46770 1.24994 0.95024 0.99051 0.94516 0.86167 0.79402 0.81565 0.78360 1.20259 1.20749 1.19695 1.22856 0.94888 0.91614 1.59053 0.90909 1.85437 1.04838 0.96360 1.96726 1.23528 1.06645 0.95219 1.04981 1.20320 0.86489 0.86213 0.75103 1.90721 1.15380 1.85518 1.47108 1.45859 1.09991 1.05086 1.78449 1.21773 0.96368 0.80949 1.03417 1.21813 0.95973 0.80441 1.04265 1.47179 1.63799 1.14004 1.06294 1.20508 0.78807 0.85546 0.83411 1.90553 1.43789 1.21096 1.84298 1.22275 1.00183 0.98093 0.93667 1.21459 0.96889 0.97227 0.97279 1.23212 0.99771 0.96718 0.98952 1.23162 0.96385 0.97940 0.99996 1.21254 0.97099 0.99771 0.93855 1.21734 1.00125 0.93276 0.88587 1.23796 1.01512 0.92074 1.05364 1.23259 0.91191 1.04231 1.03538 0.92146 0.89153 0.89149 0.76777 0.90996 0.91053 0.89349 0.88998 0.87832 0.89237 0.90251 0.85564 0.85762 0.89935 0.90012 0.85250 0.84858 0.89262 0.88540 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.86 13.22 55.49 0.73 -25.12 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -2.90 6.16 36.01 0.22 -2.68 16 11 C 0.53 9.24 7.85 -10.99 -0.09 9.16 16 12 O -0.51 -11.25 15.86 5.56 0.09 -11.17 16 13 N -0.74 -8.36 5.56 -60.29 -0.33 -8.69 16 14 C 0.10 1.03 5.98 -4.03 -0.02 1.00 16 15 C 0.10 0.66 5.42 -4.04 -0.02 0.64 16 16 N -0.58 -5.02 2.84 -166.10 -0.47 -5.49 16 17 C 0.53 5.32 6.62 -10.99 -0.07 5.25 16 18 O -0.52 -6.65 11.53 5.56 0.06 -6.58 16 19 C -0.12 -0.97 2.53 -90.06 -0.23 -1.20 16 20 C -0.09 -0.82 6.20 -26.82 -0.17 -0.99 16 21 C -0.17 -1.62 10.77 -35.70 -0.38 -2.01 16 22 C -0.16 -1.42 10.78 -35.69 -0.38 -1.80 16 23 C -0.08 -0.67 6.04 -26.83 -0.16 -0.83 16 24 C 0.07 0.58 6.63 -67.93 -0.45 0.13 16 25 C -0.19 -1.77 9.63 -26.70 -0.26 -2.03 16 26 C -0.18 -1.81 9.87 -26.70 -0.26 -2.07 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 28 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 29 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 30 H 0.40 3.10 8.47 -40.82 -0.35 2.75 16 31 H 0.07 0.86 5.45 -51.93 -0.28 0.58 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.44 8.12 -51.92 -0.42 0.02 16 34 H 0.09 0.46 5.76 -51.93 -0.30 0.16 16 35 H 0.10 0.58 6.61 -51.93 -0.34 0.24 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.83 5.19 -51.93 -0.27 0.56 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.08 0.74 7.30 -51.93 -0.38 0.36 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.13 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.13 1.53 5.25 -52.04 -0.27 1.26 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.10 1.18 7.57 -51.93 -0.39 0.79 16 LS Contribution 386.99 15.07 5.83 5.83 Total: -1.00 -35.54 386.99 -10.18 -45.73 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.78 Total: 3.38 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -2.08 Total: -10.10 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: -0.07 Total: -39.31 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.15 Total: -17.75 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.54 -10.18 -45.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284725310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.661 kcal (2) G-P(sol) polarization free energy of solvation -35.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds