Wall clock time and date at job start Tue Mar 31 2020 20:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99810 * 2 1 4 4 H 1.48499 * 109.46956 * 270.00117 * 3 2 1 5 5 H 1.48495 * 109.47190 * 29.99874 * 3 2 1 6 6 H 1.48494 * 109.46991 * 150.00341 * 3 2 1 7 7 C 1.38799 * 120.00593 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00435 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99550 * 359.97438 * 7 2 1 10 10 C 1.80995 * 99.99974 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47436 * 180.02562 * 10 9 7 12 12 O 1.21274 * 119.99546 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00001 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99709 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47056 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.46947 * 185.28227 * 15 14 13 17 17 C 1.34771 * 120.00065 * 96.10287 * 16 15 14 18 18 O 1.21283 * 120.00249 * 185.89456 * 17 16 15 19 19 C 1.50700 * 119.99851 * 5.89221 * 17 16 15 20 20 C 1.54644 * 111.07309 * 275.99585 * 19 17 16 21 21 C 1.51100 * 104.72275 * 266.58781 * 20 19 17 22 22 C 1.30526 * 111.10808 * 343.56104 * 21 20 19 23 23 C 1.51110 * 111.10330 * 0.02562 * 22 21 20 24 24 C 1.46502 * 119.99911 * 276.09741 * 16 15 14 25 25 C 1.53003 * 117.49826 * 196.83961 * 24 16 15 26 26 C 1.52998 * 117.49682 * 128.18458 * 24 16 15 27 27 H 0.96997 * 120.00636 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47183 * 59.99970 * 10 9 7 29 29 H 1.09000 * 109.47483 * 300.00604 * 10 9 7 30 30 H 0.97004 * 120.00466 * 359.97438 * 13 11 10 31 31 H 1.09000 * 109.46834 * 60.00133 * 14 13 11 32 32 H 1.08994 * 109.47003 * 299.99369 * 14 13 11 33 33 H 1.09007 * 109.46553 * 65.28187 * 15 14 13 34 34 H 1.09001 * 109.47266 * 305.28668 * 15 14 13 35 35 H 1.09005 * 110.91577 * 39.98683 * 19 17 16 36 36 H 1.08995 * 110.38453 * 147.77383 * 20 19 17 37 37 H 1.08994 * 110.38352 * 25.39632 * 20 19 17 38 38 H 1.07999 * 124.44482 * 163.82642 * 21 20 19 39 39 H 1.08001 * 124.44717 * 179.97438 * 22 21 20 40 40 H 1.08999 * 110.38299 * 135.24450 * 23 22 21 41 41 H 1.08994 * 110.38643 * 257.50886 * 23 22 21 42 42 H 1.08995 * 115.55126 * 342.51331 * 24 16 15 43 43 H 1.09001 * 117.49440 * 0.02562 * 25 24 16 44 44 H 1.09001 * 117.49647 * 145.02095 * 25 24 16 45 45 H 1.09004 * 117.50134 * 214.98034 * 26 24 16 46 46 H 1.09007 * 117.50050 * 359.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0011 13 7 2.8443 -6.3430 -0.0008 14 6 2.3306 -7.7150 -0.0008 15 6 3.5027 -8.6985 -0.0009 16 7 2.9928 -10.0659 -0.1281 17 6 2.9429 -10.6567 -1.3385 18 8 2.4232 -11.7456 -1.4608 19 6 3.5329 -9.9641 -2.5398 20 6 2.5281 -8.9607 -3.1523 21 6 1.8129 -9.7427 -4.2294 22 6 2.4675 -10.8300 -4.5342 23 6 3.7283 -10.9549 -3.7107 24 6 2.5371 -10.7913 1.0603 25 6 2.3918 -12.3103 0.9484 26 6 1.1452 -11.4244 1.0110 27 1 -0.4851 0.8400 0.0004 28 1 3.1245 -3.7312 0.8895 29 1 3.1246 -3.7312 -0.8904 30 1 3.8011 -6.1834 -0.0004 31 1 1.7223 -7.8752 -0.8910 32 1 1.7218 -7.8750 0.8890 33 1 4.0573 -8.6028 0.9326 34 1 4.1626 -8.4772 -0.8398 35 1 4.4708 -9.4713 -2.2833 36 1 3.0562 -8.1118 -3.5865 37 1 1.8205 -8.6222 -2.3956 38 1 0.8842 -9.4394 -4.6899 39 1 2.1493 -11.5468 -5.2768 40 1 3.8365 -11.9720 -3.3340 41 1 4.5988 -10.6760 -4.3044 42 1 2.8725 -10.3868 2.0153 43 1 2.6357 -12.7699 -0.0095 44 1 2.6313 -12.9051 1.8298 45 1 0.5649 -11.4368 1.9337 46 1 0.5682 -11.3009 0.0945 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284725310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:28 Heat of formation + Delta-G solvation = -33.515945 kcal Electronic energy + Delta-G solvation = -26761.004254 eV Core-core repulsion = 22970.819890 eV Total energy + Delta-G solvation = -3790.184364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.92904 -40.54304 -39.12294 -37.43789 -36.51166 -34.81272 -34.55967 -31.52634 -30.43911 -29.18723 -28.93002 -27.61492 -24.95430 -24.08974 -23.31201 -22.32223 -21.83510 -19.94686 -19.76175 -19.49965 -18.38625 -17.76265 -17.51617 -17.23848 -16.86925 -16.85753 -16.66058 -16.18589 -15.89433 -15.53028 -15.16326 -14.92844 -14.70924 -14.41866 -14.02096 -13.85661 -13.57314 -13.55609 -13.27993 -13.14087 -13.06798 -12.88171 -12.73407 -12.59308 -12.43657 -12.36295 -12.14011 -12.06039 -11.95509 -11.70992 -11.31578 -11.12312 -10.98252 -10.51644 -10.23458 -10.12765 -9.81236 -9.50130 -8.64101 -8.32587 -6.10273 1.26107 1.33477 1.41692 1.44188 1.50827 1.58111 1.64773 1.75672 2.29214 2.41334 2.94906 3.01883 3.33513 3.38553 3.54041 3.62480 3.81780 3.84640 3.95759 4.04548 4.09358 4.12211 4.20390 4.32895 4.36296 4.43391 4.54910 4.56718 4.60810 4.67795 4.77254 4.78238 4.81506 4.85215 4.96532 5.04360 5.05335 5.18768 5.31783 5.39476 5.44450 5.61832 5.67680 5.93012 6.22098 6.27295 6.54029 7.09080 7.10818 7.28937 8.76526 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017321 B = 0.002258 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.127359 B =12398.145925 C =13268.756420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.256 1.256 7 C -0.543 4.543 8 H 0.085 0.915 9 S -0.158 6.158 10 C -0.128 4.128 11 C 0.535 3.465 12 O -0.568 6.568 13 N -0.704 5.704 14 C 0.102 3.898 15 C 0.105 3.895 16 N -0.580 5.580 17 C 0.520 3.480 18 O -0.555 6.555 19 C -0.115 4.115 20 C -0.089 4.089 21 C -0.193 4.193 22 C -0.160 4.160 23 C -0.082 4.082 24 C 0.072 3.928 25 C -0.188 4.188 26 C -0.199 4.199 27 H 0.270 0.730 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.422 0.578 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.138 0.862 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.159 0.841 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.829 -23.010 -2.151 28.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.180 1.180 7 C -0.690 4.690 8 H 0.103 0.897 9 S 0.069 5.931 10 C -0.279 4.279 11 C 0.320 3.680 12 O -0.446 6.446 13 N -0.360 5.360 14 C -0.023 4.023 15 C -0.018 4.018 16 N -0.310 5.310 17 C 0.310 3.690 18 O -0.433 6.433 19 C -0.136 4.136 20 C -0.126 4.126 21 C -0.211 4.211 22 C -0.178 4.178 23 C -0.119 4.119 24 C -0.032 4.032 25 C -0.226 4.226 26 C -0.238 4.238 27 H 0.079 0.921 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.260 0.740 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.156 0.844 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.176 0.824 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.459 -23.844 -2.202 27.469 hybrid contribution 1.048 1.284 -0.078 1.659 sum 14.507 -22.560 -2.280 26.919 Atomic orbital electron populations 1.70183 1.08037 1.28541 1.48197 1.26131 0.95927 1.03378 0.93859 0.84960 0.78259 0.76060 0.78749 1.19379 1.20591 1.17978 1.23204 0.95389 0.91883 1.58563 0.89659 1.85665 1.10928 0.99476 1.97064 1.23364 1.03378 0.93993 1.07163 1.20076 0.86152 0.86741 0.75005 1.90716 1.17785 1.86102 1.50036 1.45444 1.10515 1.04268 1.75758 1.21827 0.97829 0.80739 1.01887 1.21938 0.94470 0.78161 1.07219 1.47265 1.63278 1.14534 1.05957 1.20985 0.78384 0.85290 0.84327 1.90558 1.45133 1.22757 1.84879 1.22344 1.01025 0.97654 0.92603 1.21442 0.96821 0.97777 0.96554 1.23368 1.00151 0.97633 0.99918 1.23416 0.96852 0.97555 0.99971 1.21297 0.97330 0.99305 0.93952 1.22027 0.98525 0.92924 0.89677 1.23706 1.00969 0.92836 1.05062 1.23199 0.91854 1.06143 1.02603 0.92094 0.86847 0.86771 0.73994 0.92798 0.92669 0.86164 0.86278 0.84395 0.87829 0.92079 0.86120 0.85244 0.91022 0.87578 0.82378 0.87083 0.87296 0.87341 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.56 13.22 21.65 0.29 -55.27 16 2 C 0.01 0.65 5.49 84.86 0.47 1.11 16 3 Si 1.00 42.63 29.55 68.60 2.03 44.65 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.54 -30.07 9.50 67.95 0.65 -29.42 16 8 H 0.09 4.33 7.80 -2.92 -0.02 4.31 16 9 S -0.16 -8.54 20.57 -56.49 -1.16 -9.70 16 10 C -0.13 -4.62 6.16 71.24 0.44 -4.18 16 11 C 0.53 17.84 7.85 87.66 0.69 18.53 16 12 O -0.57 -25.34 15.86 -3.01 -0.05 -25.39 16 13 N -0.70 -13.82 5.56 -463.06 -2.57 -16.39 16 14 C 0.10 1.89 5.98 86.38 0.52 2.41 16 15 C 0.10 1.00 5.42 86.38 0.47 1.46 16 16 N -0.58 -8.73 2.84 -797.82 -2.27 -11.00 16 17 C 0.52 9.86 6.62 87.66 0.58 10.44 16 18 O -0.55 -14.37 11.53 -3.04 -0.04 -14.41 16 19 C -0.12 -1.58 2.53 -10.43 -0.03 -1.61 16 20 C -0.09 -1.49 6.20 30.53 0.19 -1.30 16 21 C -0.19 -3.74 10.77 26.26 0.28 -3.45 16 22 C -0.16 -2.83 10.78 26.26 0.28 -2.55 16 23 C -0.08 -1.18 6.04 30.53 0.18 -1.00 16 24 C 0.07 1.12 6.63 44.99 0.30 1.42 16 25 C -0.19 -3.37 9.63 30.62 0.29 -3.08 16 26 C -0.20 -3.96 9.87 30.62 0.30 -3.66 16 27 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 28 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 29 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 30 H 0.42 4.50 8.47 -92.71 -0.79 3.72 16 31 H 0.05 1.26 5.45 -2.39 -0.01 1.24 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.12 0.51 8.12 -2.38 -0.02 0.49 16 34 H 0.12 0.54 5.76 -2.39 -0.01 0.53 16 35 H 0.14 0.91 6.61 -2.38 -0.02 0.90 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.26 5.19 -2.39 -0.01 1.25 16 38 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.07 1.23 7.30 -2.39 -0.02 1.21 16 41 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.16 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.11 2.59 5.25 -4.16 -0.02 2.57 16 44 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.07 1.73 7.57 -2.38 -0.02 1.72 16 Total: -1.00 -82.91 386.99 2.05 -80.86 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.21 Total: 21.51 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 5.61 Total: -14.86 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -4.55 Total: -82.66 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.08 Total: -39.80 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -82.91 2.05 -80.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284725310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.347 kcal (2) G-P(sol) polarization free energy of solvation -82.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds