Wall clock time and date at job start Tue Mar 31 2020 20:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86798 * 119.99870 * 2 1 4 4 H 1.48503 * 109.47042 * 269.99778 * 3 2 1 5 5 H 1.48500 * 109.47055 * 29.99537 * 3 2 1 6 6 H 1.48500 * 109.47155 * 149.99979 * 3 2 1 7 7 C 1.38799 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00177 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99701 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00165 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47486 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99823 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99963 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99949 * 179.97438 * 13 11 10 15 15 H 1.09003 * 112.84545 * 336.20286 * 14 13 11 16 16 C 1.53780 * 113.61241 * 107.50572 * 14 13 11 17 17 C 1.53777 * 87.07941 * 139.98452 * 16 14 13 18 18 H 1.09001 * 113.69270 * 89.12854 * 17 16 14 19 19 N 1.46501 * 113.61648 * 220.01941 * 17 16 14 20 20 C 1.34773 * 120.00348 * 252.50133 * 19 17 16 21 21 O 1.21290 * 119.99852 * 359.97438 * 20 19 17 22 22 C 1.50696 * 120.00368 * 180.02562 * 20 19 17 23 23 H 1.08999 * 115.55283 * 34.27073 * 22 20 19 24 24 C 1.53006 * 117.49484 * 248.60662 * 22 20 19 25 25 C 1.52997 * 117.52180 * 179.97438 * 22 20 19 26 26 H 1.09002 * 117.49910 * 359.97438 * 25 22 20 27 27 C 1.53001 * 117.49889 * 214.96954 * 25 22 20 28 28 C 1.53003 * 117.49800 * 128.60549 * 27 25 22 29 29 C 1.53002 * 117.50188 * 59.98279 * 27 25 22 30 30 C 1.53777 * 113.61544 * 205.00505 * 14 13 11 31 31 H 0.96993 * 119.99890 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.47032 * 59.99881 * 10 9 7 33 33 H 1.09007 * 109.46980 * 300.00102 * 10 9 7 34 34 H 0.97001 * 120.00818 * 0.02562 * 13 11 10 35 35 H 1.09000 * 113.61319 * 25.43752 * 16 14 13 36 36 H 1.09000 * 113.61545 * 254.53159 * 16 14 13 37 37 H 0.97001 * 120.00113 * 72.49445 * 19 17 16 38 38 H 1.08990 * 117.50086 * 359.97011 * 24 22 20 39 39 H 1.09004 * 117.49623 * 144.99895 * 24 22 20 40 40 H 1.09002 * 115.54417 * 274.30830 * 27 25 22 41 41 H 1.08994 * 117.50135 * 359.97438 * 28 27 25 42 42 H 1.09004 * 117.49813 * 145.01837 * 28 27 25 43 43 H 1.08991 * 117.49612 * 214.98068 * 29 27 25 44 44 H 1.09002 * 117.49475 * 359.97438 * 29 27 25 45 45 H 1.09004 * 113.61423 * 105.47185 * 30 14 13 46 46 H 1.08998 * 113.61752 * 334.56796 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 -0.0001 10 6 4.0867 -2.9845 0.0001 11 6 5.5731 -3.2325 0.0002 12 8 6.3441 -2.2963 0.0006 13 7 6.0457 -4.4947 0.0010 14 6 7.4908 -4.7358 0.0005 15 1 8.0593 -3.8991 -0.4057 16 6 8.0292 -5.2542 1.3445 17 6 8.9328 -6.1948 0.5300 18 1 9.8971 -5.7587 0.2690 19 7 9.0525 -7.5371 1.1047 20 6 10.2012 -7.9156 1.6994 21 8 11.1361 -7.1451 1.7583 22 6 10.3245 -9.2964 2.2902 23 1 9.7897 -10.0842 1.7597 24 6 10.4168 -9.4074 3.8134 25 6 11.6538 -9.6665 2.9509 26 1 12.4398 -8.9113 2.9581 27 6 12.1307 -11.1141 2.8164 28 6 13.5570 -11.3441 2.3127 29 6 12.3656 -11.6522 1.4036 30 6 7.8880 -6.0971 -0.5942 31 1 -0.4849 0.8400 -0.0004 32 1 3.6434 -3.4318 -0.8896 33 1 3.6441 -3.4314 0.8904 34 1 5.4292 -5.2435 0.0011 35 1 7.2818 -5.7760 1.9422 36 1 8.5792 -4.5043 1.9130 37 1 8.3049 -8.1534 1.0574 38 1 10.3889 -8.4817 4.3881 39 1 9.9428 -10.2683 4.2849 40 1 11.7416 -11.8083 3.5613 41 1 14.1555 -10.4642 2.0767 42 1 14.1066 -12.1898 2.7261 43 1 12.1313 -12.7005 1.2190 44 1 12.1799 -10.9750 0.5698 45 1 8.3241 -6.0277 -1.5908 46 1 7.1021 -6.8493 -0.5265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353711708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:16 Heat of formation + Delta-G solvation = -9.974837 kcal Electronic energy + Delta-G solvation = -25162.499517 eV Core-core repulsion = 21373.335972 eV Total energy + Delta-G solvation = -3789.163545 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.79961 -39.84048 -38.60464 -37.78319 -35.34458 -34.34257 -32.67810 -32.44755 -29.32457 -26.17372 -26.07333 -25.62168 -24.16150 -23.30907 -22.81467 -21.00163 -20.54034 -20.47335 -19.91799 -17.89146 -17.67031 -17.15801 -16.47918 -16.20752 -15.64781 -15.46078 -15.26216 -15.06589 -14.96221 -14.72774 -14.38188 -13.78441 -13.56285 -13.29908 -13.02687 -12.87080 -12.82416 -12.80649 -12.16714 -12.10105 -11.89815 -11.66921 -11.61153 -11.39510 -11.36814 -11.26924 -11.15435 -11.01596 -10.61224 -10.55730 -10.28480 -10.03181 -9.86600 -9.55338 -9.41242 -9.02811 -8.96185 -8.51764 -6.93440 -6.30342 -4.02256 2.09109 2.59547 2.79985 2.90557 3.14536 3.31189 3.34834 3.49096 3.49997 3.65314 4.01756 4.09180 4.21097 4.26290 4.32167 4.32885 4.48321 4.56419 4.59637 4.61709 4.70462 4.72217 4.77382 4.95775 5.08881 5.18067 5.18503 5.21758 5.28901 5.33831 5.39232 5.43704 5.47120 5.55085 5.62773 5.66055 5.72988 5.77093 5.79365 5.88560 5.98382 6.17834 6.51860 7.11133 7.56596 7.85831 7.92689 8.39869 8.45041 9.15927 10.78878 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.038859 B = 0.001518 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.389359 B =18441.758089 C =18544.037600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.725 5.725 14 C 0.130 3.870 15 H 0.119 0.881 16 C -0.164 4.164 17 C 0.124 3.876 18 H 0.119 0.881 19 N -0.714 5.714 20 C 0.543 3.457 21 O -0.539 6.539 22 C -0.188 4.188 23 H 0.124 0.876 24 C -0.143 4.143 25 C -0.089 4.089 26 H 0.120 0.880 27 C -0.129 4.129 28 C -0.174 4.174 29 C -0.177 4.177 30 C -0.153 4.153 31 H 0.271 0.729 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.400 0.600 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.402 0.598 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.841 -26.776 3.790 34.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.276 4.276 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.378 5.378 14 C 0.024 3.976 15 H 0.137 0.863 16 C -0.205 4.205 17 C 0.019 3.981 18 H 0.137 0.863 19 N -0.364 5.364 20 C 0.330 3.670 21 O -0.416 6.416 22 C -0.209 4.209 23 H 0.142 0.858 24 C -0.180 4.180 25 C -0.107 4.107 26 H 0.138 0.862 27 C -0.147 4.147 28 C -0.211 4.211 29 C -0.214 4.214 30 C -0.192 4.192 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.234 0.766 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.236 0.764 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.102 0.898 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 23.623 -24.525 3.818 34.265 hybrid contribution -1.681 -1.059 -0.099 1.989 sum 21.941 -25.584 3.718 33.909 Atomic orbital electron populations 1.69938 1.05921 1.27784 1.48044 1.24709 0.94443 0.98961 0.93135 0.86737 0.81903 0.83274 0.79954 1.19191 1.19916 1.15925 1.22316 0.88276 0.97536 1.58852 0.89403 1.84811 1.09275 1.00002 1.97426 1.23289 0.93996 1.04473 1.05800 1.20334 0.90602 0.82421 0.74869 1.90703 1.58759 1.42192 1.47518 1.45889 1.06676 1.08050 1.77189 1.22154 0.82271 0.97076 0.96110 0.86277 1.23991 0.99224 0.99205 0.98037 1.22326 0.99242 0.82542 0.93990 0.86305 1.45865 1.15757 1.15913 1.58882 1.19731 0.82213 0.87754 0.77308 1.90715 1.38640 1.54318 1.57879 1.22314 1.04857 0.96127 0.97651 0.85768 1.23070 1.00778 1.03999 0.90199 1.21824 0.91005 0.96012 1.01886 0.86244 1.21785 0.99947 0.94955 0.98042 1.22998 0.90738 1.03546 1.03775 1.22982 1.03029 1.01760 0.93619 1.23759 0.98584 0.97607 0.99211 0.91932 0.88469 0.88462 0.76593 0.89280 0.90329 0.76362 0.88006 0.87596 0.87325 0.88517 0.88646 0.88722 0.88636 0.89811 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.44 13.97 55.49 0.78 -25.67 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.73 27.74 -169.99 -4.71 17.02 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 7 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 10 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 11 C 0.53 9.08 7.85 -10.99 -0.09 9.00 16 12 O -0.52 -10.94 15.46 5.55 0.09 -10.85 16 13 N -0.73 -8.43 5.35 -53.02 -0.28 -8.72 16 14 C 0.13 1.33 4.24 -67.12 -0.28 1.04 16 15 H 0.12 1.45 7.47 -51.93 -0.39 1.07 16 16 C -0.16 -1.54 7.68 -25.92 -0.20 -1.74 16 17 C 0.12 1.00 4.24 -67.12 -0.28 0.72 16 18 H 0.12 1.16 7.46 -51.93 -0.39 0.77 16 19 N -0.71 -4.89 5.35 -53.02 -0.28 -5.17 16 20 C 0.54 4.89 7.61 -10.99 -0.08 4.81 16 21 O -0.54 -7.09 15.86 5.55 0.09 -7.00 16 22 C -0.19 -1.17 5.83 -91.77 -0.54 -1.71 16 23 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16 24 C -0.14 -0.80 9.96 -26.72 -0.27 -1.07 16 25 C -0.09 -0.58 5.38 -90.62 -0.49 -1.07 16 26 H 0.12 1.02 7.67 -51.93 -0.40 0.62 16 27 C -0.13 -0.68 5.87 -90.62 -0.53 -1.21 16 28 C -0.17 -0.90 10.25 -26.73 -0.27 -1.18 16 29 C -0.18 -0.89 10.18 -26.73 -0.27 -1.17 16 30 C -0.15 -1.04 7.58 -25.92 -0.20 -1.23 16 31 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 33 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 34 H 0.40 3.42 8.73 -40.82 -0.36 3.06 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.40 1.65 8.73 -40.82 -0.36 1.29 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 LS Contribution 401.93 15.07 6.06 6.06 Total: -1.00 -35.93 401.93 -10.71 -46.65 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.38 Total: 2.11 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -3.06 Total: -8.87 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.21 Total: -39.55 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.17 Total: -17.86 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.02 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.93 -10.71 -46.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353711708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.673 kcal (2) G-P(sol) polarization free energy of solvation -35.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds