Wall clock time and date at job start Tue Mar 31 2020 20:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86798 * 119.99870 * 2 1 4 4 H 1.48503 * 109.47042 * 269.99778 * 3 2 1 5 5 H 1.48500 * 109.47055 * 29.99537 * 3 2 1 6 6 H 1.48500 * 109.47155 * 149.99979 * 3 2 1 7 7 C 1.38799 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00177 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99701 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00165 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47486 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99823 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99963 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99949 * 179.97438 * 13 11 10 15 15 H 1.09003 * 112.84545 * 336.20286 * 14 13 11 16 16 C 1.53780 * 113.61241 * 107.50572 * 14 13 11 17 17 C 1.53777 * 87.07941 * 139.98452 * 16 14 13 18 18 H 1.09001 * 113.69270 * 89.12854 * 17 16 14 19 19 N 1.46501 * 113.61648 * 220.01941 * 17 16 14 20 20 C 1.34773 * 120.00348 * 252.50133 * 19 17 16 21 21 O 1.21290 * 119.99852 * 359.97438 * 20 19 17 22 22 C 1.50696 * 120.00368 * 180.02562 * 20 19 17 23 23 H 1.08999 * 115.55283 * 34.27073 * 22 20 19 24 24 C 1.53006 * 117.49484 * 248.60662 * 22 20 19 25 25 C 1.52997 * 117.52180 * 179.97438 * 22 20 19 26 26 H 1.09002 * 117.49910 * 359.97438 * 25 22 20 27 27 C 1.53001 * 117.49889 * 214.96954 * 25 22 20 28 28 C 1.53003 * 117.49800 * 128.60549 * 27 25 22 29 29 C 1.53002 * 117.50188 * 59.98279 * 27 25 22 30 30 C 1.53777 * 113.61544 * 205.00505 * 14 13 11 31 31 H 0.96993 * 119.99890 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.47032 * 59.99881 * 10 9 7 33 33 H 1.09007 * 109.46980 * 300.00102 * 10 9 7 34 34 H 0.97001 * 120.00818 * 0.02562 * 13 11 10 35 35 H 1.09000 * 113.61319 * 25.43752 * 16 14 13 36 36 H 1.09000 * 113.61545 * 254.53159 * 16 14 13 37 37 H 0.97001 * 120.00113 * 72.49445 * 19 17 16 38 38 H 1.08990 * 117.50086 * 359.97011 * 24 22 20 39 39 H 1.09004 * 117.49623 * 144.99895 * 24 22 20 40 40 H 1.09002 * 115.54417 * 274.30830 * 27 25 22 41 41 H 1.08994 * 117.50135 * 359.97438 * 28 27 25 42 42 H 1.09004 * 117.49813 * 145.01837 * 28 27 25 43 43 H 1.08991 * 117.49612 * 214.98068 * 29 27 25 44 44 H 1.09002 * 117.49475 * 359.97438 * 29 27 25 45 45 H 1.09004 * 113.61423 * 105.47185 * 30 14 13 46 46 H 1.08998 * 113.61752 * 334.56796 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 -0.0001 10 6 4.0867 -2.9845 0.0001 11 6 5.5731 -3.2325 0.0002 12 8 6.3441 -2.2963 0.0006 13 7 6.0457 -4.4947 0.0010 14 6 7.4908 -4.7358 0.0005 15 1 8.0593 -3.8991 -0.4057 16 6 8.0292 -5.2542 1.3445 17 6 8.9328 -6.1948 0.5300 18 1 9.8971 -5.7587 0.2690 19 7 9.0525 -7.5371 1.1047 20 6 10.2012 -7.9156 1.6994 21 8 11.1361 -7.1451 1.7583 22 6 10.3245 -9.2964 2.2902 23 1 9.7897 -10.0842 1.7597 24 6 10.4168 -9.4074 3.8134 25 6 11.6538 -9.6665 2.9509 26 1 12.4398 -8.9113 2.9581 27 6 12.1307 -11.1141 2.8164 28 6 13.5570 -11.3441 2.3127 29 6 12.3656 -11.6522 1.4036 30 6 7.8880 -6.0971 -0.5942 31 1 -0.4849 0.8400 -0.0004 32 1 3.6434 -3.4318 -0.8896 33 1 3.6441 -3.4314 0.8904 34 1 5.4292 -5.2435 0.0011 35 1 7.2818 -5.7760 1.9422 36 1 8.5792 -4.5043 1.9130 37 1 8.3049 -8.1534 1.0574 38 1 10.3889 -8.4817 4.3881 39 1 9.9428 -10.2683 4.2849 40 1 11.7416 -11.8083 3.5613 41 1 14.1555 -10.4642 2.0767 42 1 14.1066 -12.1898 2.7261 43 1 12.1313 -12.7005 1.2190 44 1 12.1799 -10.9750 0.5698 45 1 8.3241 -6.0277 -1.5908 46 1 7.1021 -6.8493 -0.5265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353711708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:15 Heat of formation + Delta-G solvation = -34.635584 kcal Electronic energy + Delta-G solvation = -25163.568887 eV Core-core repulsion = 21373.335972 eV Total energy + Delta-G solvation = -3790.232915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56602 -40.77763 -39.48208 -38.52373 -35.82667 -35.29753 -34.66990 -33.67114 -30.74070 -27.86800 -26.83266 -26.76121 -24.73078 -23.96413 -23.22029 -21.90448 -21.46123 -21.19975 -20.52863 -19.81718 -18.33767 -18.10847 -17.74186 -17.11113 -16.70933 -16.53967 -16.45697 -16.09527 -15.95733 -15.78437 -15.32551 -15.09105 -14.86191 -14.54201 -14.09113 -13.97232 -13.49955 -13.46140 -13.35188 -13.34496 -13.01676 -12.77731 -12.54332 -12.38209 -12.32825 -12.29838 -11.99064 -11.87470 -11.84749 -11.81224 -11.17098 -11.05459 -10.97336 -10.86751 -10.54573 -10.52605 -10.18680 -9.97117 -8.99413 -8.51668 -6.22207 0.99491 1.31062 1.42283 1.46869 1.55509 1.55640 2.00096 2.24489 2.35287 2.68379 2.73636 2.86869 3.05548 3.36310 3.52560 3.58890 3.73375 3.82906 3.85152 3.88273 3.92336 4.05760 4.15702 4.24655 4.25700 4.35687 4.47887 4.52725 4.58971 4.65950 4.68612 4.81448 4.81571 4.86977 4.97320 5.00101 5.04266 5.07199 5.20441 5.28156 5.35033 5.44179 5.57824 5.70813 6.11499 6.48580 6.55191 6.93993 7.21529 7.23602 8.60633 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.038859 B = 0.001518 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.389359 B =18441.758089 C =18544.037600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.239 1.239 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.181 6.181 10 C -0.111 4.111 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.697 5.697 14 C 0.118 3.882 15 H 0.095 0.905 16 C -0.161 4.161 17 C 0.127 3.873 18 H 0.098 0.902 19 N -0.698 5.698 20 C 0.537 3.463 21 O -0.589 6.589 22 C -0.183 4.183 23 H 0.153 0.847 24 C -0.132 4.132 25 C -0.100 4.100 26 H 0.090 0.910 27 C -0.125 4.125 28 C -0.184 4.184 29 C -0.174 4.174 30 C -0.126 4.126 31 H 0.277 0.723 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.420 0.580 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.420 0.580 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.816 -29.599 3.746 36.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.162 1.162 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.046 5.954 10 C -0.262 4.262 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.350 5.350 14 C 0.012 3.988 15 H 0.113 0.887 16 C -0.201 4.201 17 C 0.021 3.979 18 H 0.116 0.884 19 N -0.349 5.349 20 C 0.325 3.675 21 O -0.470 6.470 22 C -0.203 4.203 23 H 0.170 0.830 24 C -0.169 4.169 25 C -0.119 4.119 26 H 0.108 0.892 27 C -0.143 4.143 28 C -0.221 4.221 29 C -0.210 4.210 30 C -0.164 4.164 31 H 0.086 0.914 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.258 0.742 35 H 0.122 0.878 36 H 0.073 0.927 37 H 0.258 0.742 38 H 0.106 0.894 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.102 0.898 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 23.558 -27.429 3.767 36.353 hybrid contribution -1.614 -0.318 -0.070 1.647 sum 21.944 -27.748 3.698 35.569 Atomic orbital electron populations 1.70012 1.07252 1.28987 1.49192 1.25528 0.95229 1.02136 0.92908 0.85891 0.80654 0.79784 0.80192 1.18715 1.18365 1.16249 1.22461 0.90202 0.96718 1.58187 0.91791 1.84780 1.06497 1.06551 1.97596 1.23282 0.95867 0.99407 1.07624 1.20031 0.89379 0.83628 0.74888 1.90698 1.59382 1.44017 1.50229 1.45621 1.07837 1.06706 1.74810 1.22270 0.80714 0.98323 0.97450 0.88681 1.23976 0.99524 0.99032 0.97581 1.22098 0.98502 0.82894 0.94398 0.88418 1.45717 1.15824 1.15564 1.57753 1.20283 0.81915 0.88481 0.76826 1.90701 1.40469 1.55958 1.59863 1.22354 1.04833 0.94954 0.98207 0.82983 1.23140 0.99811 1.04346 0.89646 1.21751 0.90745 0.96289 1.03141 0.89158 1.21802 0.99711 0.94173 0.98585 1.23053 0.91009 1.03572 1.04434 1.23015 1.02524 1.02358 0.93151 1.23657 0.98372 0.95574 0.98823 0.91387 0.86563 0.86689 0.74217 0.87778 0.92737 0.74220 0.89363 0.84950 0.85679 0.89839 0.87447 0.87218 0.89556 0.88882 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.44 13.97 21.65 0.30 -55.14 16 2 C 0.05 2.77 5.50 84.86 0.47 3.24 16 3 Si 0.91 44.97 27.74 68.60 1.90 46.87 16 4 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.24 -11.79 6.74 99.48 0.67 -11.12 16 7 C -0.53 -30.44 10.04 67.95 0.68 -29.75 16 8 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 9 S -0.18 -9.05 18.55 -56.49 -1.05 -10.10 16 10 C -0.11 -3.99 6.16 71.24 0.44 -3.55 16 11 C 0.54 17.52 7.85 87.66 0.69 18.21 16 12 O -0.57 -23.85 15.46 -3.04 -0.05 -23.89 16 13 N -0.70 -14.39 5.35 -440.03 -2.36 -16.75 16 14 C 0.12 2.21 4.24 45.51 0.19 2.41 16 15 H 0.10 2.33 7.47 -2.39 -0.02 2.31 16 16 C -0.16 -2.82 7.68 31.12 0.24 -2.58 16 17 C 0.13 1.86 4.24 45.52 0.19 2.06 16 18 H 0.10 1.93 7.46 -2.39 -0.02 1.91 16 19 N -0.70 -7.96 5.35 -440.04 -2.36 -10.32 16 20 C 0.54 9.18 7.61 87.66 0.67 9.85 16 21 O -0.59 -16.07 15.86 -3.06 -0.05 -16.11 16 22 C -0.18 -1.92 5.83 -11.54 -0.07 -1.99 16 23 H 0.15 0.75 8.14 -2.39 -0.02 0.73 16 24 C -0.13 -1.24 9.96 30.60 0.30 -0.94 16 25 C -0.10 -1.26 5.38 -10.79 -0.06 -1.31 16 26 H 0.09 1.67 7.67 -2.39 -0.02 1.65 16 27 C -0.12 -1.10 5.87 -10.79 -0.06 -1.16 16 28 C -0.18 -1.77 10.25 30.60 0.31 -1.46 16 29 C -0.17 -1.46 10.18 30.60 0.31 -1.14 16 30 C -0.13 -1.30 7.58 31.12 0.24 -1.06 16 31 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 32 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 33 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 34 H 0.42 5.44 8.73 -92.71 -0.81 4.63 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.42 1.80 8.73 -92.71 -0.81 1.00 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.13 0.56 8.14 -2.38 -0.02 0.54 16 40 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.12 0.56 8.09 -2.39 -0.02 0.54 16 Total: -1.00 -81.34 401.93 0.24 -81.10 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -0.65 Total: 13.54 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 4.54 Total: -9.20 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -4.41 Total: -82.21 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -0.10 Total: -40.01 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.87 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -81.34 0.24 -81.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353711708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.469 kcal (2) G-P(sol) polarization free energy of solvation -81.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds