Wall clock time and date at job start Tue Mar 31 2020 20:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48496 * 109.47097 * 270.00066 * 3 2 1 5 5 H 1.48503 * 109.46990 * 29.99806 * 3 2 1 6 6 H 1.48496 * 109.47160 * 149.99898 * 3 2 1 7 7 C 1.38804 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99903 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99794 * 0.02562 * 7 2 1 10 10 C 1.81008 * 99.99747 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46947 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00223 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99839 * 180.02562 * 11 10 9 14 14 C 1.46845 * 120.38626 * 180.02562 * 13 11 10 15 15 C 1.53352 * 108.81520 * 123.11133 * 14 13 11 16 16 C 1.53184 * 108.76256 * 51.32155 * 15 14 13 17 17 C 1.52846 * 117.65842 * 90.02250 * 16 15 14 18 18 C 1.52819 * 117.71377 * 158.88174 * 16 15 14 19 19 H 1.08997 * 117.50314 * 144.89895 * 18 16 15 20 20 N 1.46505 * 117.50029 * 359.85905 * 18 16 15 21 21 C 1.34777 * 119.99975 * 155.00449 * 20 18 16 22 22 O 1.21278 * 119.99783 * 359.97438 * 21 20 18 23 23 C 1.50698 * 119.99919 * 179.97438 * 21 20 18 24 24 C 1.53002 * 117.49684 * 248.74273 * 23 21 20 25 25 C 1.52999 * 117.49633 * 180.08758 * 23 21 20 26 26 C 1.53179 * 115.07772 * 304.54759 * 16 15 14 27 27 C 1.46849 * 120.38275 * 0.02562 * 13 11 10 28 28 H 0.97000 * 120.00342 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46999 * 60.00174 * 10 9 7 30 30 H 1.08997 * 109.46913 * 299.99900 * 10 9 7 31 31 H 1.09008 * 109.57827 * 3.31439 * 14 13 11 32 32 H 1.08993 * 109.69432 * 242.98213 * 14 13 11 33 33 H 1.08993 * 109.58916 * 291.53686 * 15 14 13 34 34 H 1.09000 * 109.58683 * 171.09990 * 15 14 13 35 35 H 1.08999 * 117.50224 * 215.18952 * 17 16 15 36 36 H 1.09001 * 117.50106 * 0.20072 * 17 16 15 37 37 H 0.96999 * 119.99961 * 334.99938 * 20 18 16 38 38 H 1.08999 * 115.55124 * 34.41478 * 23 21 20 39 39 H 1.08994 * 117.49787 * 0.02562 * 24 23 21 40 40 H 1.09000 * 117.49693 * 145.01981 * 24 23 21 41 41 H 1.09002 * 117.49772 * 214.98102 * 25 23 21 42 42 H 1.09000 * 117.49866 * 359.97157 * 25 23 21 43 43 H 1.08997 * 109.59332 * 175.23041 * 26 16 15 44 44 H 1.09005 * 109.59025 * 295.65953 * 26 16 15 45 45 H 1.08998 * 109.57925 * 356.67636 * 27 13 11 46 46 H 1.08998 * 109.58108 * 116.94707 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9873 -5.3028 -0.0001 12 8 0.7911 -5.5024 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 2.3384 -7.7218 -0.0009 15 6 2.9138 -8.4586 -1.2165 16 6 4.4341 -8.2715 -1.2318 17 6 5.2836 -9.3047 -0.4920 18 6 5.2664 -9.2806 -2.0220 19 1 6.1572 -8.9106 -2.5296 20 7 4.5500 -10.3590 -2.7076 21 6 5.0995 -10.9549 -3.7845 22 8 6.1867 -10.5979 -4.1861 23 6 4.3628 -12.0646 -4.4893 24 6 4.9453 -13.4757 -4.3867 25 6 5.0403 -12.7020 -5.7041 26 6 4.9094 -6.8154 -1.2130 27 6 4.2941 -6.1111 0.0019 28 1 -0.4851 0.8400 0.0004 29 1 3.1244 -3.7314 0.8905 30 1 3.1244 -3.7314 -0.8894 31 1 1.2501 -7.7116 -0.0614 32 1 2.6486 -8.2276 0.9134 33 1 2.4857 -8.0462 -2.1300 34 1 2.6770 -9.5202 -1.1461 35 1 6.1856 -8.9504 0.0070 36 1 4.7618 -10.1225 0.0050 37 1 3.6803 -10.6443 -2.3865 38 1 3.2773 -11.9686 -4.5112 39 1 5.8610 -13.6014 -3.8091 40 1 4.2430 -14.3080 -4.3415 41 1 4.4004 -13.0256 -6.5250 42 1 6.0186 -12.3183 -5.9937 43 1 5.9965 -6.7867 -1.1403 44 1 4.5888 -6.3146 -2.1266 45 1 4.4929 -5.0411 -0.0569 46 1 4.7274 -6.5134 0.9177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524252000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:55 Heat of formation + Delta-G solvation = -22.768084 kcal Electronic energy + Delta-G solvation = -26292.082804 eV Core-core repulsion = 22502.364502 eV Total energy + Delta-G solvation = -3789.718302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.76095 -39.89381 -38.51867 -36.53383 -35.60154 -33.36634 -32.43417 -31.86836 -30.02227 -28.56471 -25.50653 -25.37808 -23.87822 -23.57632 -22.90972 -21.85446 -20.53708 -20.15922 -18.47151 -17.99712 -17.57397 -16.93129 -16.39504 -15.69741 -15.64101 -15.38612 -15.01624 -14.87968 -14.80819 -14.43936 -14.17590 -13.91358 -13.66692 -13.44680 -13.05252 -12.87891 -12.73045 -12.54234 -12.32168 -12.16398 -12.02524 -11.81289 -11.45259 -11.18767 -11.11035 -11.06715 -11.02631 -10.97032 -10.88934 -10.74959 -10.34378 -10.11395 -9.80679 -9.36847 -9.12481 -9.06984 -8.47541 -8.23187 -6.50806 -6.22163 -3.92802 2.04751 2.60148 2.92829 3.02462 3.22004 3.25729 3.29941 3.31919 3.52673 3.58774 4.17327 4.19580 4.25900 4.30074 4.34627 4.40306 4.45078 4.54976 4.65274 4.85165 4.94974 5.08797 5.11552 5.12998 5.17286 5.26196 5.28640 5.36929 5.42639 5.45502 5.47608 5.54460 5.55520 5.65066 5.66111 5.71510 5.82413 5.87082 5.93628 6.03452 6.10749 6.11733 6.63680 7.07117 7.54397 7.59185 7.82652 8.34585 8.54861 9.23147 10.85231 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022069 B = 0.001969 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.464729 B =14216.717989 C =14430.122071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.151 4.151 11 C 0.535 3.465 12 O -0.518 6.518 13 N -0.618 5.618 14 C 0.118 3.882 15 C -0.096 4.096 16 C -0.123 4.123 17 C -0.180 4.180 18 C 0.087 3.913 19 H 0.137 0.863 20 N -0.696 5.696 21 C 0.547 3.453 22 O -0.539 6.539 23 C -0.198 4.198 24 C -0.152 4.152 25 C -0.147 4.147 26 C -0.098 4.098 27 C 0.112 3.888 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.402 0.598 38 H 0.125 0.875 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.612 -26.347 -4.496 29.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.301 4.301 11 C 0.323 3.677 12 O -0.392 6.392 13 N -0.354 5.354 14 C -0.005 4.005 15 C -0.134 4.134 16 C -0.125 4.125 17 C -0.218 4.218 18 C -0.019 4.019 19 H 0.155 0.845 20 N -0.346 5.346 21 C 0.334 3.666 22 O -0.416 6.416 23 C -0.219 4.219 24 C -0.190 4.190 25 C -0.184 4.184 26 C -0.136 4.136 27 C -0.011 4.011 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.238 0.762 38 H 0.143 0.857 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.127 0.873 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.440 -26.276 -4.789 28.676 hybrid contribution 1.532 1.144 0.241 1.927 sum 11.972 -25.132 -4.548 28.207 Atomic orbital electron populations 1.70016 1.05949 1.27450 1.46847 1.24993 0.95029 0.99025 0.94539 0.86171 0.79416 0.81579 0.78356 1.20270 1.20750 1.19688 1.22857 0.94883 0.91626 1.58958 0.90940 1.85401 1.05029 0.96366 1.96697 1.23557 1.06463 0.95437 1.04682 1.20353 0.86224 0.86265 0.74877 1.90685 1.15224 1.85241 1.48080 1.48011 1.06314 1.05672 1.75410 1.21421 1.00715 0.81510 0.96900 1.21483 0.92102 0.99927 0.99922 1.21965 0.94012 0.92528 1.03970 1.23625 1.02475 1.01242 0.94481 1.21775 0.98403 0.90892 0.90835 0.84520 1.45322 1.22567 1.36524 1.30171 1.19671 0.85417 0.82023 0.79486 1.90700 1.21233 1.64260 1.65365 1.22201 1.00360 0.94278 1.05033 1.22963 1.02930 0.91995 1.01093 1.22979 1.03014 1.01371 0.91032 1.21552 1.00257 0.92297 0.99523 1.21658 0.80091 1.01643 0.97743 0.92187 0.89264 0.89271 0.88691 0.91755 0.90603 0.91287 0.87786 0.88424 0.76199 0.85699 0.88217 0.87655 0.87758 0.87325 0.90302 0.90539 0.88942 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.53 -15.17 9.50 30.94 0.29 -14.88 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.03 4.49 36.01 0.16 -2.87 16 11 C 0.53 10.00 7.71 -10.99 -0.08 9.92 16 12 O -0.52 -11.67 15.24 5.56 0.08 -11.59 16 13 N -0.62 -8.41 2.92 -172.72 -0.50 -8.91 16 14 C 0.12 1.32 6.44 -3.67 -0.02 1.29 16 15 C -0.10 -0.83 5.37 -26.45 -0.14 -0.97 16 16 C -0.12 -1.00 1.94 -154.49 -0.30 -1.30 16 17 C -0.18 -1.22 9.86 -26.79 -0.26 -1.48 16 18 C 0.09 0.72 6.14 -68.00 -0.42 0.30 16 19 H 0.14 1.35 7.40 -51.93 -0.38 0.96 16 20 N -0.70 -5.28 5.35 -53.88 -0.29 -5.57 16 21 C 0.55 5.16 7.61 -10.99 -0.08 5.07 16 22 O -0.54 -7.19 15.82 5.56 0.09 -7.10 16 23 C -0.20 -1.28 6.19 -91.77 -0.57 -1.85 16 24 C -0.15 -0.80 10.24 -26.69 -0.27 -1.07 16 25 C -0.15 -0.91 10.05 -26.70 -0.27 -1.18 16 26 C -0.10 -0.87 5.83 -26.47 -0.15 -1.02 16 27 C 0.11 1.17 6.35 -3.69 -0.02 1.14 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.09 1.66 7.87 -51.92 -0.41 1.25 16 30 H 0.09 1.66 7.74 -51.92 -0.40 1.26 16 31 H 0.09 1.25 6.96 -51.92 -0.36 0.89 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.43 6.75 -51.93 -0.35 0.08 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.40 2.16 7.12 -40.82 -0.29 1.87 16 38 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.11 0.85 7.67 -51.93 -0.40 0.45 16 43 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.00 5.86 -51.93 -0.30 0.70 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 390.21 15.07 5.88 5.88 Total: -1.00 -36.17 390.21 -10.58 -46.74 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -7.09 Total: 0.37 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -2.24 Total: -6.90 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: -0.06 Total: -39.85 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.17 Total: -18.68 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.17 -10.58 -46.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524252000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.975 kcal (2) G-P(sol) polarization free energy of solvation -36.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds