Wall clock time and date at job start Tue Mar 31 2020 20:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48496 * 109.47097 * 270.00066 * 3 2 1 5 5 H 1.48503 * 109.46990 * 29.99806 * 3 2 1 6 6 H 1.48496 * 109.47160 * 149.99898 * 3 2 1 7 7 C 1.38804 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99903 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99794 * 0.02562 * 7 2 1 10 10 C 1.81008 * 99.99747 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46947 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00223 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99839 * 180.02562 * 11 10 9 14 14 C 1.46845 * 120.38626 * 180.02562 * 13 11 10 15 15 C 1.53352 * 108.81520 * 123.11133 * 14 13 11 16 16 C 1.53184 * 108.76256 * 51.32155 * 15 14 13 17 17 C 1.52846 * 117.65842 * 90.02250 * 16 15 14 18 18 C 1.52819 * 117.71377 * 158.88174 * 16 15 14 19 19 H 1.08997 * 117.50314 * 144.89895 * 18 16 15 20 20 N 1.46505 * 117.50029 * 359.85905 * 18 16 15 21 21 C 1.34777 * 119.99975 * 155.00449 * 20 18 16 22 22 O 1.21278 * 119.99783 * 359.97438 * 21 20 18 23 23 C 1.50698 * 119.99919 * 179.97438 * 21 20 18 24 24 C 1.53002 * 117.49684 * 248.74273 * 23 21 20 25 25 C 1.52999 * 117.49633 * 180.08758 * 23 21 20 26 26 C 1.53179 * 115.07772 * 304.54759 * 16 15 14 27 27 C 1.46849 * 120.38275 * 0.02562 * 13 11 10 28 28 H 0.97000 * 120.00342 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46999 * 60.00174 * 10 9 7 30 30 H 1.08997 * 109.46913 * 299.99900 * 10 9 7 31 31 H 1.09008 * 109.57827 * 3.31439 * 14 13 11 32 32 H 1.08993 * 109.69432 * 242.98213 * 14 13 11 33 33 H 1.08993 * 109.58916 * 291.53686 * 15 14 13 34 34 H 1.09000 * 109.58683 * 171.09990 * 15 14 13 35 35 H 1.08999 * 117.50224 * 215.18952 * 17 16 15 36 36 H 1.09001 * 117.50106 * 0.20072 * 17 16 15 37 37 H 0.96999 * 119.99961 * 334.99938 * 20 18 16 38 38 H 1.08999 * 115.55124 * 34.41478 * 23 21 20 39 39 H 1.08994 * 117.49787 * 0.02562 * 24 23 21 40 40 H 1.09000 * 117.49693 * 145.01981 * 24 23 21 41 41 H 1.09002 * 117.49772 * 214.98102 * 25 23 21 42 42 H 1.09000 * 117.49866 * 359.97157 * 25 23 21 43 43 H 1.08997 * 109.59332 * 175.23041 * 26 16 15 44 44 H 1.09005 * 109.59025 * 295.65953 * 26 16 15 45 45 H 1.08998 * 109.57925 * 356.67636 * 27 13 11 46 46 H 1.08998 * 109.58108 * 116.94707 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9873 -5.3028 -0.0001 12 8 0.7911 -5.5024 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 2.3384 -7.7218 -0.0009 15 6 2.9138 -8.4586 -1.2165 16 6 4.4341 -8.2715 -1.2318 17 6 5.2836 -9.3047 -0.4920 18 6 5.2664 -9.2806 -2.0220 19 1 6.1572 -8.9106 -2.5296 20 7 4.5500 -10.3590 -2.7076 21 6 5.0995 -10.9549 -3.7845 22 8 6.1867 -10.5979 -4.1861 23 6 4.3628 -12.0646 -4.4893 24 6 4.9453 -13.4757 -4.3867 25 6 5.0403 -12.7020 -5.7041 26 6 4.9094 -6.8154 -1.2130 27 6 4.2941 -6.1111 0.0019 28 1 -0.4851 0.8400 0.0004 29 1 3.1244 -3.7314 0.8905 30 1 3.1244 -3.7314 -0.8894 31 1 1.2501 -7.7116 -0.0614 32 1 2.6486 -8.2276 0.9134 33 1 2.4857 -8.0462 -2.1300 34 1 2.6770 -9.5202 -1.1461 35 1 6.1856 -8.9504 0.0070 36 1 4.7618 -10.1225 0.0050 37 1 3.6803 -10.6443 -2.3865 38 1 3.2773 -11.9686 -4.5112 39 1 5.8610 -13.6014 -3.8091 40 1 4.2430 -14.3080 -4.3415 41 1 4.4004 -13.0256 -6.5250 42 1 6.0186 -12.3183 -5.9937 43 1 5.9965 -6.7867 -1.1403 44 1 4.5888 -6.3146 -2.1266 45 1 4.4929 -5.0411 -0.0569 46 1 4.7274 -6.5134 0.9177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524252000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:55 Heat of formation + Delta-G solvation = -46.481946 kcal Electronic energy + Delta-G solvation = -26293.111114 eV Core-core repulsion = 22502.364502 eV Total energy + Delta-G solvation = -3790.746612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57232 -40.86811 -39.51096 -37.18662 -36.60055 -34.59044 -34.16180 -32.83236 -31.10132 -29.80443 -27.67133 -25.96690 -24.78161 -24.46747 -23.33409 -22.49125 -21.25873 -21.19349 -19.89965 -19.09489 -18.57108 -18.11068 -17.25398 -16.94764 -16.87278 -16.63754 -16.25676 -15.87128 -15.68337 -15.54968 -15.08245 -15.02262 -14.80123 -14.46493 -14.45249 -13.98947 -13.57700 -13.48895 -13.39784 -13.16971 -13.05754 -12.90232 -12.78528 -12.60548 -12.45754 -12.21304 -11.95902 -11.74882 -11.62776 -11.56499 -11.48385 -11.14858 -11.07352 -10.85885 -10.80039 -10.26865 -9.91038 -9.47442 -8.67675 -8.35064 -6.13333 1.25660 1.38073 1.42018 1.45836 1.56183 1.57551 2.00565 2.12886 2.27083 2.75922 2.95301 2.99023 3.24692 3.54262 3.61156 3.65812 3.73905 3.84166 3.86059 3.91079 3.97346 4.09645 4.20405 4.24443 4.28833 4.41785 4.47842 4.51443 4.59916 4.71184 4.73558 4.82023 4.82728 4.91658 4.94581 4.97351 5.01193 5.02750 5.21240 5.22357 5.26823 5.41290 5.48898 5.59854 6.19264 6.29490 6.47119 7.06128 7.15050 7.18094 8.74132 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022069 B = 0.001969 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.464729 B =14216.717989 C =14430.122071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.124 4.124 11 C 0.532 3.468 12 O -0.567 6.567 13 N -0.604 5.604 14 C 0.113 3.887 15 C -0.087 4.087 16 C -0.127 4.127 17 C -0.156 4.156 18 C 0.076 3.924 19 H 0.118 0.882 20 N -0.686 5.686 21 C 0.539 3.461 22 O -0.587 6.587 23 C -0.203 4.203 24 C -0.137 4.137 25 C -0.157 4.157 26 C -0.095 4.095 27 C 0.106 3.894 28 H 0.271 0.729 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.415 0.585 38 H 0.150 0.850 39 H 0.090 0.910 40 H 0.132 0.868 41 H 0.124 0.876 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.057 0.943 45 H 0.088 0.912 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.559 -27.903 -3.784 31.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.338 5.338 14 C -0.009 4.009 15 C -0.126 4.126 16 C -0.128 4.128 17 C -0.194 4.194 18 C -0.031 4.031 19 H 0.136 0.864 20 N -0.335 5.335 21 C 0.328 3.672 22 O -0.468 6.468 23 C -0.224 4.224 24 C -0.175 4.175 25 C -0.195 4.195 26 C -0.133 4.133 27 C -0.016 4.016 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.253 0.747 38 H 0.167 0.833 39 H 0.108 0.892 40 H 0.150 0.850 41 H 0.142 0.858 42 H 0.103 0.897 43 H 0.119 0.881 44 H 0.076 0.924 45 H 0.106 0.894 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.413 -27.879 -4.059 30.786 hybrid contribution 1.003 1.490 0.016 1.796 sum 13.416 -26.389 -4.043 29.879 Atomic orbital electron populations 1.70182 1.07961 1.28599 1.47982 1.26131 0.95977 1.03310 0.93746 0.84957 0.78249 0.76028 0.78775 1.19383 1.20263 1.18113 1.23191 0.95320 0.91948 1.58879 0.89930 1.85570 1.10655 0.99268 1.97017 1.23378 1.03347 0.94607 1.06203 1.20121 0.86044 0.86719 0.75183 1.90667 1.17247 1.85786 1.50920 1.48036 1.07240 1.05550 1.72980 1.21637 0.99611 0.80261 0.99345 1.21406 0.92296 1.01216 0.97641 1.21865 0.93560 0.92309 1.05108 1.23709 1.02295 1.00373 0.92996 1.21699 0.97974 0.91294 0.92096 0.86401 1.45260 1.22888 1.35837 1.29555 1.20237 0.84996 0.82397 0.79561 1.90677 1.23435 1.65907 1.66753 1.22295 1.01248 0.93921 1.04893 1.23048 1.02889 0.91901 0.99640 1.23024 1.02345 1.02025 0.92079 1.21519 1.01456 0.92506 0.97809 1.21950 0.77909 1.01989 0.99779 0.91997 0.87413 0.87771 0.91054 0.89074 0.92642 0.88196 0.86564 0.86838 0.74713 0.83282 0.89193 0.85012 0.85794 0.89717 0.88104 0.92438 0.89395 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.12 13.22 21.65 0.29 -55.84 16 2 C 0.01 0.75 5.49 84.86 0.47 1.22 16 3 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 7 C -0.55 -31.25 9.50 67.96 0.65 -30.60 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 10 C -0.12 -5.00 4.49 71.24 0.32 -4.68 16 11 C 0.53 20.00 7.71 87.66 0.68 20.68 16 12 O -0.57 -26.50 15.24 -3.03 -0.05 -26.55 16 13 N -0.60 -15.62 2.92 -818.76 -2.39 -18.02 16 14 C 0.11 2.34 6.44 86.43 0.56 2.90 16 15 C -0.09 -1.32 5.37 30.77 0.17 -1.16 16 16 C -0.13 -1.72 1.94 -52.17 -0.10 -1.83 16 17 C -0.16 -1.52 9.86 30.55 0.30 -1.22 16 18 C 0.08 1.10 6.14 44.94 0.28 1.38 16 19 H 0.12 2.24 7.40 -2.39 -0.02 2.22 16 20 N -0.69 -9.12 5.35 -442.76 -2.37 -11.49 16 21 C 0.54 9.74 7.61 87.66 0.67 10.41 16 22 O -0.59 -15.96 15.82 -3.02 -0.05 -16.01 16 23 C -0.20 -2.28 6.19 -11.54 -0.07 -2.35 16 24 C -0.14 -1.17 10.24 30.62 0.31 -0.85 16 25 C -0.16 -1.81 10.05 30.62 0.31 -1.50 16 26 C -0.09 -1.47 5.83 30.76 0.18 -1.29 16 27 C 0.11 1.93 6.35 86.42 0.55 2.48 16 28 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 29 H 0.11 3.90 7.87 -2.39 -0.02 3.88 16 30 H 0.10 3.84 7.74 -2.40 -0.02 3.82 16 31 H 0.07 1.86 6.96 -2.38 -0.02 1.84 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.10 0.90 6.75 -2.39 -0.02 0.88 16 35 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.41 3.27 7.12 -92.71 -0.66 2.61 16 38 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.13 0.43 8.14 -2.39 -0.02 0.42 16 41 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 1.39 7.67 -2.39 -0.02 1.37 16 43 H 0.10 1.16 8.10 -2.39 -0.02 1.14 16 44 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.09 1.71 5.86 -2.39 -0.01 1.69 16 46 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -83.48 390.21 1.88 -81.60 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.33 Total: 16.74 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 5.25 Total: -6.43 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -4.47 Total: -85.35 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.09 Total: -42.56 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -83.48 1.88 -81.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524252000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.113 kcal (2) G-P(sol) polarization free energy of solvation -83.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds