Wall clock time and date at job start Tue Mar 31 2020 20:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99876 * 2 1 4 4 H 1.48503 * 109.47276 * 269.99831 * 3 2 1 5 5 H 1.48500 * 109.47531 * 29.99835 * 3 2 1 6 6 H 1.48500 * 109.47236 * 150.00024 * 3 2 1 7 7 C 1.38796 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00042 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99912 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99769 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47095 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00045 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00024 * 180.02562 * 11 10 9 14 14 C 1.46845 * 120.38647 * 179.97438 * 13 11 10 15 15 C 1.53352 * 108.81520 * 123.06488 * 14 13 11 16 16 C 1.53184 * 108.76256 * 51.32155 * 15 14 13 17 17 C 1.52846 * 117.65842 * 90.02250 * 16 15 14 18 18 C 1.52819 * 117.71377 * 158.88174 * 16 15 14 19 19 H 1.08997 * 117.50078 * 359.85835 * 18 16 15 20 20 N 1.46500 * 117.50122 * 144.89896 * 18 16 15 21 21 C 1.34781 * 119.99500 * 204.99791 * 20 18 16 22 22 O 1.21276 * 120.00385 * 359.97438 * 21 20 18 23 23 C 1.50702 * 119.99855 * 180.02562 * 21 20 18 24 24 C 1.53002 * 117.49379 * 248.62444 * 23 21 20 25 25 C 1.52994 * 117.50186 * 180.02562 * 23 21 20 26 26 C 1.53179 * 115.07772 * 304.54759 * 16 15 14 27 27 C 1.46849 * 120.38253 * 359.97115 * 13 11 10 28 28 H 0.97012 * 120.00264 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47311 * 59.99947 * 10 9 7 30 30 H 1.09003 * 109.47350 * 300.00081 * 10 9 7 31 31 H 1.09008 * 109.57827 * 3.26794 * 14 13 11 32 32 H 1.08993 * 109.69432 * 242.93568 * 14 13 11 33 33 H 1.08993 * 109.58916 * 291.53686 * 15 14 13 34 34 H 1.09000 * 109.58683 * 171.09990 * 15 14 13 35 35 H 1.08999 * 117.50224 * 215.18952 * 17 16 15 36 36 H 1.08996 * 117.50286 * 0.23073 * 17 16 15 37 37 H 0.96991 * 120.00100 * 25.00385 * 20 18 16 38 38 H 1.09002 * 115.55225 * 34.32593 * 23 21 20 39 39 H 1.08995 * 117.50111 * 359.97438 * 24 23 21 40 40 H 1.09002 * 117.50161 * 145.02201 * 24 23 21 41 41 H 1.09003 * 117.50197 * 214.97865 * 25 23 21 42 42 H 1.09005 * 117.49766 * 359.97438 * 25 23 21 43 43 H 1.08997 * 109.59332 * 175.23041 * 26 16 15 44 44 H 1.09005 * 109.59025 * 295.65953 * 26 16 15 45 45 H 1.08998 * 109.57925 * 356.72281 * 27 13 11 46 46 H 1.08990 * 109.58197 * 117.12806 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6528 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2019 -0.0001 10 6 4.0866 -2.9844 0.0001 11 6 5.5731 -3.2324 0.0002 12 8 6.3441 -2.2961 -0.0003 13 7 6.0457 -4.4945 -0.0001 14 6 7.4925 -4.7459 -0.0005 15 6 7.8446 -5.6110 1.2157 16 6 6.9225 -6.8341 1.2339 17 6 7.3915 -8.0873 0.4952 18 6 7.3813 -8.0583 2.0252 19 1 8.3434 -7.9973 2.5339 20 7 6.3529 -8.8456 2.7099 21 6 6.6781 -9.5871 3.7875 22 8 7.8220 -9.6028 4.1899 23 6 5.6204 -10.3974 4.4915 24 6 5.2106 -9.9546 5.8975 25 6 6.0524 -11.2176 5.7087 26 6 5.4238 -6.5177 1.2168 27 6 5.1198 -5.6343 0.0001 28 1 -0.4851 0.8401 -0.0004 29 1 3.6433 -3.4317 -0.8896 30 1 3.6440 -3.4313 0.8904 31 1 8.0279 -3.7982 0.0580 32 1 7.7742 -5.2687 -0.9145 33 1 7.7028 -5.0329 2.1288 34 1 8.8823 -5.9368 1.1444 35 1 6.6330 -8.6920 -0.0019 36 1 8.3602 -8.0451 -0.0027 37 1 5.4382 -8.8334 2.3878 38 1 4.8458 -10.8180 3.8502 39 1 5.7062 -9.0774 6.3134 40 1 4.1662 -10.0836 6.1815 41 1 5.5620 -12.1779 5.8683 42 1 7.1017 -11.1714 6.0000 43 1 4.8553 -7.4449 1.1461 44 1 5.1516 -5.9884 2.1301 45 1 4.0937 -5.2714 0.0592 46 1 5.2526 -6.2130 -0.9139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524252001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:59 Heat of formation + Delta-G solvation = -22.673654 kcal Electronic energy + Delta-G solvation = -26439.541005 eV Core-core repulsion = 22649.826798 eV Total energy + Delta-G solvation = -3789.714207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.79149 -39.94569 -38.58950 -36.53783 -35.65220 -33.47648 -32.45952 -31.78115 -30.24373 -28.62641 -25.64561 -25.37414 -23.97482 -23.64324 -22.86877 -21.85156 -20.54546 -20.25098 -18.54833 -17.97695 -17.62717 -16.94382 -16.49191 -15.74526 -15.71005 -15.46880 -15.05644 -14.97603 -14.77655 -14.53604 -14.20236 -13.89028 -13.61356 -13.53286 -13.18786 -12.97806 -12.81499 -12.61239 -12.42541 -12.21207 -12.00032 -11.94129 -11.50067 -11.28691 -11.16715 -11.07396 -11.02516 -10.99675 -10.95596 -10.59893 -10.35484 -10.13382 -9.87476 -9.48653 -9.15107 -9.02222 -8.55320 -8.50805 -6.94065 -6.31014 -4.02783 2.04839 2.58617 2.69635 2.89980 3.18027 3.31892 3.32777 3.49339 3.51290 3.57051 4.17616 4.22115 4.29004 4.31507 4.34797 4.39497 4.43359 4.50321 4.64099 4.66161 4.84270 5.03299 5.05053 5.08171 5.11061 5.17151 5.26450 5.31840 5.35185 5.39240 5.45431 5.49332 5.52244 5.53559 5.65905 5.68247 5.71334 5.80634 5.88311 5.95070 6.00175 6.10005 6.55069 7.06239 7.44107 7.81978 7.91920 8.38822 8.41925 9.15333 10.78110 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015493 B = 0.002288 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.862403 B =12233.144710 C =13424.227002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.121 4.121 11 C 0.533 3.467 12 O -0.519 6.519 13 N -0.616 5.616 14 C 0.117 3.883 15 C -0.096 4.096 16 C -0.124 4.124 17 C -0.180 4.180 18 C 0.088 3.912 19 H 0.137 0.863 20 N -0.697 5.697 21 C 0.547 3.453 22 O -0.539 6.539 23 C -0.198 4.198 24 C -0.151 4.151 25 C -0.147 4.147 26 C -0.098 4.098 27 C 0.112 3.888 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.403 0.597 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.916 -23.900 5.204 27.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.272 4.272 11 C 0.321 3.679 12 O -0.394 6.394 13 N -0.352 5.352 14 C -0.006 4.006 15 C -0.134 4.134 16 C -0.125 4.125 17 C -0.218 4.218 18 C -0.018 4.018 19 H 0.154 0.846 20 N -0.346 5.346 21 C 0.334 3.666 22 O -0.416 6.416 23 C -0.219 4.219 24 C -0.188 4.188 25 C -0.185 4.185 26 C -0.137 4.137 27 C -0.012 4.012 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.238 0.762 38 H 0.143 0.857 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.111 0.889 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.706 -22.418 5.503 26.846 hybrid contribution -1.435 -0.476 -0.362 1.555 sum 12.271 -22.895 5.140 26.480 Atomic orbital electron populations 1.69936 1.05906 1.27779 1.48061 1.24710 0.94455 0.98977 0.93173 0.86737 0.81905 0.83276 0.79949 1.19201 1.19942 1.15922 1.22298 0.88232 0.97496 1.58799 0.89417 1.84820 1.09299 1.00137 1.97399 1.23310 0.94179 1.04223 1.05482 1.20317 0.90631 0.81920 0.75064 1.90687 1.58731 1.41718 1.48225 1.47980 1.06485 1.05568 1.75159 1.21465 0.81232 1.00684 0.97196 1.21539 0.97902 0.94388 0.99566 1.21963 0.96343 0.90163 1.04069 1.23629 1.03619 1.00053 0.94533 1.21764 0.93971 0.95259 0.90846 0.84564 1.45322 1.12083 1.46929 1.30289 1.19684 0.88691 0.78668 0.79512 1.90697 1.21057 1.64472 1.65377 1.22189 1.01810 1.05494 0.92422 1.22965 1.01434 0.99612 0.94838 1.22958 1.01943 0.95578 0.97990 1.21508 0.92680 0.99775 0.99711 1.21686 0.94306 0.87459 0.97744 0.91934 0.88584 0.88579 0.88647 0.91601 0.90715 0.90448 0.88352 0.87814 0.76161 0.85749 0.88104 0.87536 0.87808 0.87375 0.90999 0.90395 0.88892 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.30 13.97 55.49 0.78 -25.53 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.67 27.74 -169.99 -4.71 16.95 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 7 C -0.52 -14.80 10.04 30.94 0.31 -14.49 16 8 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 9 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.31 4.49 36.01 0.16 -2.15 16 11 C 0.53 9.43 7.71 -10.98 -0.08 9.34 16 12 O -0.52 -11.12 15.24 5.56 0.08 -11.04 16 13 N -0.62 -7.93 2.92 -172.68 -0.50 -8.43 16 14 C 0.12 1.28 6.44 -3.67 -0.02 1.25 16 15 C -0.10 -0.85 5.83 -26.45 -0.15 -1.01 16 16 C -0.12 -0.96 1.94 -154.49 -0.30 -1.26 16 17 C -0.18 -1.17 9.86 -26.79 -0.26 -1.44 16 18 C 0.09 0.70 6.14 -68.01 -0.42 0.29 16 19 H 0.14 1.31 7.40 -51.93 -0.38 0.93 16 20 N -0.70 -5.15 5.35 -53.88 -0.29 -5.44 16 21 C 0.55 5.11 7.61 -10.98 -0.08 5.03 16 22 O -0.54 -7.12 15.82 5.56 0.09 -7.04 16 23 C -0.20 -1.29 6.19 -91.77 -0.57 -1.85 16 24 C -0.15 -0.90 10.23 -26.75 -0.27 -1.17 16 25 C -0.15 -0.92 10.04 -26.76 -0.27 -1.19 16 26 C -0.10 -0.76 5.37 -26.43 -0.14 -0.90 16 27 C 0.11 1.06 6.36 -3.65 -0.02 1.04 16 28 H 0.27 7.52 8.31 -40.81 -0.34 7.18 16 29 H 0.10 1.69 7.87 -51.92 -0.41 1.29 16 30 H 0.10 1.69 7.74 -51.91 -0.40 1.29 16 31 H 0.10 1.23 6.96 -51.92 -0.36 0.87 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.40 2.07 7.12 -40.82 -0.29 1.78 16 38 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.11 0.85 7.67 -51.93 -0.40 0.45 16 43 H 0.07 0.39 6.75 -51.93 -0.35 0.04 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.92 5.86 -51.93 -0.30 0.61 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 387.52 15.07 5.84 5.84 Total: -1.00 -35.64 387.52 -10.07 -45.70 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.13 Total: 0.41 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.23 Total: -5.84 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: -0.02 Total: -39.40 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.17 Total: -18.07 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.64 -10.07 -45.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524252001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.031 kcal (2) G-P(sol) polarization free energy of solvation -35.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds