Wall clock time and date at job start Tue Mar 31 2020 20:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99888 * 2 1 4 4 H 1.48493 * 109.47189 * 270.00041 * 3 2 1 5 5 H 1.48494 * 109.46989 * 30.00503 * 3 2 1 6 6 H 1.48499 * 109.46905 * 150.00089 * 3 2 1 7 7 C 1.38802 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99950 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00007 * 179.97438 * 7 2 1 10 10 C 1.80992 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47214 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99961 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00084 * 179.97438 * 11 10 9 14 14 C 1.46961 * 120.59682 * 180.02562 * 13 11 10 15 15 C 1.53369 * 108.63484 * 235.25246 * 14 13 11 16 16 N 1.46965 * 108.63458 * 310.57149 * 15 14 13 17 17 C 1.34769 * 120.59377 * 235.20608 * 16 15 14 18 18 O 1.21285 * 120.00225 * 7.20490 * 17 16 15 19 19 C 1.50703 * 120.00018 * 187.19987 * 17 16 15 20 20 C 1.52998 * 115.54919 * 171.51511 * 19 17 16 21 21 C 1.52991 * 117.50242 * 34.20691 * 20 19 17 22 22 C 1.53002 * 60.00416 * 252.50951 * 21 20 19 23 23 C 1.53001 * 117.49649 * 25.81052 * 19 17 16 24 24 C 1.52990 * 59.99802 * 252.50795 * 23 19 17 25 25 C 1.46961 * 118.80889 * 55.47727 * 16 15 14 26 26 C 1.46966 * 120.59128 * 0.02562 * 13 11 10 27 27 H 0.97000 * 120.00563 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47626 * 59.99410 * 10 9 7 29 29 H 1.09007 * 109.46906 * 299.99830 * 10 9 7 30 30 H 1.08997 * 109.61251 * 115.50300 * 14 13 11 31 31 H 1.09003 * 109.60147 * 354.99240 * 14 13 11 32 32 H 1.08994 * 109.60813 * 190.82593 * 15 14 13 33 33 H 1.09005 * 109.60974 * 70.31827 * 15 14 13 34 34 H 1.09004 * 115.54924 * 179.97438 * 20 19 17 35 35 H 1.09006 * 117.49977 * 0.02562 * 21 20 19 36 36 H 1.09004 * 117.50025 * 145.02063 * 21 20 19 37 37 H 1.08998 * 117.49677 * 252.50929 * 22 21 20 38 38 H 1.08997 * 117.49887 * 107.48327 * 22 21 20 39 39 H 1.08997 * 117.50130 * 0.02562 * 23 19 17 40 40 H 1.09000 * 117.49868 * 145.01766 * 23 19 17 41 41 H 1.09005 * 117.50311 * 252.50736 * 24 23 19 42 42 H 1.09004 * 117.50075 * 107.48970 * 24 23 19 43 43 H 1.09009 * 109.61007 * 64.26949 * 25 16 15 44 44 H 1.09008 * 109.61208 * 184.77643 * 25 16 15 45 45 H 1.08996 * 109.61420 * 244.49423 * 26 13 11 46 46 H 1.09000 * 109.61313 * 5.01084 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1373 -0.0014 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9845 -0.0025 11 6 5.5730 -3.2325 -0.0026 12 8 6.3440 -2.2963 -0.0024 13 7 6.0457 -4.4947 -0.0030 14 6 7.4927 -4.7516 -0.0026 15 6 7.8309 -5.6523 -1.1970 16 7 6.9084 -6.7964 -1.1984 17 6 7.3811 -8.0585 -1.1997 18 8 8.5696 -8.2612 -1.0681 19 6 6.4328 -9.2181 -1.3648 20 6 7.0903 -10.5865 -1.5543 21 6 8.4051 -10.8468 -0.8166 22 6 8.4071 -10.6359 -2.3320 23 6 5.1191 -8.9565 -2.1042 24 6 5.1150 -9.1689 -0.5891 25 6 5.4615 -6.5395 -1.2044 26 6 5.1232 -5.6388 -0.0039 27 1 -0.4851 0.8400 -0.0004 28 1 3.6432 -3.4310 -0.8925 29 1 3.6440 -3.4321 0.8874 30 1 7.7752 -5.2512 0.9240 31 1 8.0316 -3.8083 -0.0916 32 1 8.8567 -6.0095 -1.1068 33 1 7.7170 -5.0894 -2.1235 34 1 6.4044 -11.4252 -1.6732 35 1 8.8015 -10.0432 -0.1957 36 1 8.5844 -11.8571 -0.4488 37 1 8.5876 -11.5075 -2.9611 38 1 8.8049 -9.6935 -2.7085 39 1 4.9409 -7.9460 -2.4716 40 1 4.7230 -9.7594 -2.7260 41 1 4.7162 -10.1115 -0.2139 42 1 4.9339 -8.2979 0.0408 43 1 5.1827 -6.0383 -2.1315 44 1 4.9220 -7.4829 -1.1193 45 1 5.2373 -6.2015 0.9225 46 1 4.0973 -5.2815 -0.0939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001719979310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:49 Heat of formation + Delta-G solvation = 44.551538 kcal Electronic energy + Delta-G solvation = -27487.023619 eV Core-core repulsion = 23700.224515 eV Total energy + Delta-G solvation = -3786.799104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.68502 -39.73403 -37.75891 -37.56524 -35.81148 -33.82300 -32.48700 -31.84018 -29.65484 -27.92448 -25.67710 -25.23835 -24.34344 -23.36136 -22.90169 -22.28867 -21.62169 -20.10456 -18.79459 -17.70673 -17.15098 -16.74225 -16.50788 -16.00125 -15.75244 -15.62746 -15.46767 -15.09242 -14.97074 -14.39327 -14.07984 -13.95047 -13.69622 -13.54183 -13.31336 -12.84768 -12.70423 -12.52326 -12.15252 -12.00060 -11.86105 -11.79405 -11.62602 -11.56480 -11.40281 -11.29803 -11.06678 -11.04966 -10.64888 -10.34283 -9.90558 -9.86095 -9.79053 -9.59168 -9.41656 -9.04931 -8.55197 -8.50064 -6.98007 -6.33675 -4.06048 2.04515 2.39167 2.71670 2.81854 3.12442 3.20169 3.29636 3.46913 3.52416 3.76690 3.88059 3.96284 4.23552 4.28673 4.38303 4.43280 4.47097 4.66535 4.75771 4.81272 4.85791 4.91148 4.97157 4.97809 5.04536 5.05561 5.08703 5.16069 5.31515 5.34752 5.42188 5.46314 5.50221 5.53081 5.54843 5.62975 5.67385 5.70617 5.88001 5.97777 6.10248 6.17672 6.36679 7.00262 7.31771 7.82141 7.89149 8.31122 8.36001 9.12509 10.75398 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026041 B = 0.002450 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.986401 B =11423.694455 C =12224.189505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.122 4.122 11 C 0.534 3.466 12 O -0.515 6.515 13 N -0.619 5.619 14 C 0.101 3.899 15 C 0.099 3.901 16 N -0.607 5.607 17 C 0.553 3.447 18 O -0.530 6.530 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.168 4.168 22 C -0.168 4.168 23 C -0.177 4.177 24 C -0.167 4.167 25 C 0.029 3.971 26 C 0.091 3.909 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.124 0.876 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.079 0.921 44 H 0.149 0.851 45 H 0.074 0.926 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.733 -23.026 -3.099 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.273 4.273 11 C 0.322 3.678 12 O -0.389 6.389 13 N -0.356 5.356 14 C -0.023 4.023 15 C -0.024 4.024 16 N -0.340 5.340 17 C 0.342 3.658 18 O -0.407 6.407 19 C -0.124 4.124 20 C -0.135 4.135 21 C -0.205 4.205 22 C -0.205 4.205 23 C -0.213 4.213 24 C -0.204 4.204 25 C -0.093 4.093 26 C -0.033 4.033 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.142 0.858 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.097 0.903 44 H 0.165 0.835 45 H 0.092 0.908 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.353 -21.607 -3.022 25.580 hybrid contribution -0.967 -0.318 -0.071 1.020 sum 12.386 -21.926 -3.093 25.372 Atomic orbital electron populations 1.69929 1.05898 1.27826 1.47916 1.24708 0.94452 0.98971 0.93142 0.86742 0.81900 0.83307 0.79955 1.19195 1.19905 1.15941 1.22288 0.88146 0.97522 1.58963 0.89361 1.84848 1.09410 0.99839 1.97404 1.23310 0.93893 1.04519 1.05562 1.20360 0.90749 0.81717 0.74992 1.90696 1.58725 1.41555 1.47958 1.48020 1.06367 1.05598 1.75591 1.21909 0.81681 1.00846 0.97828 1.22047 0.95070 0.86373 0.98904 1.47926 1.07107 1.05419 1.73568 1.19516 0.88238 0.82535 0.75519 1.90633 1.16605 1.83944 1.49498 1.20934 0.89030 0.94313 1.08170 1.21369 0.90764 0.93691 1.07722 1.23159 0.99108 1.02613 0.95620 1.22952 0.99438 1.03283 0.94809 1.23836 0.97536 1.05151 0.94803 1.23489 0.97339 1.04875 0.94648 1.23985 0.81876 1.04001 0.99462 1.22275 0.95119 0.87683 0.98217 0.91894 0.88504 0.88444 0.91238 0.87633 0.87829 0.90774 0.87169 0.86747 0.89620 0.89386 0.88105 0.85849 0.87288 0.87011 0.86557 0.90289 0.83453 0.90825 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.96 13.97 55.49 0.78 -25.19 16 2 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 3 Si 0.86 21.40 27.74 -169.99 -4.72 16.68 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 7 C -0.52 -14.56 10.04 30.94 0.31 -14.25 16 8 H 0.09 2.55 8.03 -52.49 -0.42 2.13 16 9 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 10 C -0.12 -2.24 4.50 36.01 0.16 -2.08 16 11 C 0.53 9.14 7.72 -10.98 -0.08 9.06 16 12 O -0.52 -10.77 15.27 5.56 0.08 -10.68 16 13 N -0.62 -7.82 2.95 -172.20 -0.51 -8.33 16 14 C 0.10 1.15 6.59 -3.60 -0.02 1.13 16 15 C 0.10 1.01 6.60 -3.60 -0.02 0.98 16 16 N -0.61 -5.70 2.94 -172.19 -0.51 -6.21 16 17 C 0.55 5.70 7.15 -10.99 -0.08 5.62 16 18 O -0.53 -6.83 11.35 5.55 0.06 -6.77 16 19 C -0.12 -0.94 2.47 -155.66 -0.38 -1.33 16 20 C -0.12 -0.93 5.85 -90.62 -0.53 -1.46 16 21 C -0.17 -1.52 9.66 -26.73 -0.26 -1.78 16 22 C -0.17 -1.50 9.67 -26.73 -0.26 -1.76 16 23 C -0.18 -0.97 9.02 -26.74 -0.24 -1.22 16 24 C -0.17 -0.91 9.04 -26.74 -0.24 -1.15 16 25 C 0.03 0.22 4.07 -3.35 -0.01 0.21 16 26 C 0.09 0.83 6.30 -3.35 -0.02 0.81 16 27 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.10 1.61 7.72 -51.92 -0.40 1.21 16 29 H 0.10 1.65 7.91 -51.91 -0.41 1.24 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.11 1.34 6.99 -51.93 -0.36 0.98 16 32 H 0.10 1.07 7.00 -51.93 -0.36 0.71 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.11 1.29 5.98 -51.93 -0.31 0.97 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 1.10 6.57 -51.93 -0.34 0.76 16 39 H 0.12 0.66 4.95 -51.93 -0.26 0.40 16 40 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.12 0.58 5.59 -51.93 -0.29 0.29 16 43 H 0.08 0.61 7.90 -51.92 -0.41 0.20 16 44 H 0.15 0.82 1.67 -56.22 -0.09 0.73 16 45 H 0.07 0.59 7.92 -51.93 -0.41 0.18 16 46 H 0.10 0.90 5.91 -51.93 -0.31 0.59 16 LS Contribution 367.35 15.07 5.54 5.54 Total: -1.00 -34.36 367.35 -9.54 -43.90 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.50 Total: 1.10 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.78 Total: -4.56 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: -0.24 Total: -39.72 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.15 Total: -17.46 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.72 Total: 16.68 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.36 -9.54 -43.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719979310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.449 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds