Wall clock time and date at job start Tue Mar 31 2020 20:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99888 * 2 1 4 4 H 1.48493 * 109.47189 * 270.00041 * 3 2 1 5 5 H 1.48494 * 109.46989 * 30.00503 * 3 2 1 6 6 H 1.48499 * 109.46905 * 150.00089 * 3 2 1 7 7 C 1.38802 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99950 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00007 * 179.97438 * 7 2 1 10 10 C 1.80992 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47214 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99961 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00084 * 179.97438 * 11 10 9 14 14 C 1.46961 * 120.59682 * 180.02562 * 13 11 10 15 15 C 1.53369 * 108.63484 * 235.25246 * 14 13 11 16 16 N 1.46965 * 108.63458 * 310.57149 * 15 14 13 17 17 C 1.34769 * 120.59377 * 235.20608 * 16 15 14 18 18 O 1.21285 * 120.00225 * 7.20490 * 17 16 15 19 19 C 1.50703 * 120.00018 * 187.19987 * 17 16 15 20 20 C 1.52998 * 115.54919 * 171.51511 * 19 17 16 21 21 C 1.52991 * 117.50242 * 34.20691 * 20 19 17 22 22 C 1.53002 * 60.00416 * 252.50951 * 21 20 19 23 23 C 1.53001 * 117.49649 * 25.81052 * 19 17 16 24 24 C 1.52990 * 59.99802 * 252.50795 * 23 19 17 25 25 C 1.46961 * 118.80889 * 55.47727 * 16 15 14 26 26 C 1.46966 * 120.59128 * 0.02562 * 13 11 10 27 27 H 0.97000 * 120.00563 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47626 * 59.99410 * 10 9 7 29 29 H 1.09007 * 109.46906 * 299.99830 * 10 9 7 30 30 H 1.08997 * 109.61251 * 115.50300 * 14 13 11 31 31 H 1.09003 * 109.60147 * 354.99240 * 14 13 11 32 32 H 1.08994 * 109.60813 * 190.82593 * 15 14 13 33 33 H 1.09005 * 109.60974 * 70.31827 * 15 14 13 34 34 H 1.09004 * 115.54924 * 179.97438 * 20 19 17 35 35 H 1.09006 * 117.49977 * 0.02562 * 21 20 19 36 36 H 1.09004 * 117.50025 * 145.02063 * 21 20 19 37 37 H 1.08998 * 117.49677 * 252.50929 * 22 21 20 38 38 H 1.08997 * 117.49887 * 107.48327 * 22 21 20 39 39 H 1.08997 * 117.50130 * 0.02562 * 23 19 17 40 40 H 1.09000 * 117.49868 * 145.01766 * 23 19 17 41 41 H 1.09005 * 117.50311 * 252.50736 * 24 23 19 42 42 H 1.09004 * 117.50075 * 107.48970 * 24 23 19 43 43 H 1.09009 * 109.61007 * 64.26949 * 25 16 15 44 44 H 1.09008 * 109.61208 * 184.77643 * 25 16 15 45 45 H 1.08996 * 109.61420 * 244.49423 * 26 13 11 46 46 H 1.09000 * 109.61313 * 5.01084 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1373 -0.0014 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9845 -0.0025 11 6 5.5730 -3.2325 -0.0026 12 8 6.3440 -2.2963 -0.0024 13 7 6.0457 -4.4947 -0.0030 14 6 7.4927 -4.7516 -0.0026 15 6 7.8309 -5.6523 -1.1970 16 7 6.9084 -6.7964 -1.1984 17 6 7.3811 -8.0585 -1.1997 18 8 8.5696 -8.2612 -1.0681 19 6 6.4328 -9.2181 -1.3648 20 6 7.0903 -10.5865 -1.5543 21 6 8.4051 -10.8468 -0.8166 22 6 8.4071 -10.6359 -2.3320 23 6 5.1191 -8.9565 -2.1042 24 6 5.1150 -9.1689 -0.5891 25 6 5.4615 -6.5395 -1.2044 26 6 5.1232 -5.6388 -0.0039 27 1 -0.4851 0.8400 -0.0004 28 1 3.6432 -3.4310 -0.8925 29 1 3.6440 -3.4321 0.8874 30 1 7.7752 -5.2512 0.9240 31 1 8.0316 -3.8083 -0.0916 32 1 8.8567 -6.0095 -1.1068 33 1 7.7170 -5.0894 -2.1235 34 1 6.4044 -11.4252 -1.6732 35 1 8.8015 -10.0432 -0.1957 36 1 8.5844 -11.8571 -0.4488 37 1 8.5876 -11.5075 -2.9611 38 1 8.8049 -9.6935 -2.7085 39 1 4.9409 -7.9460 -2.4716 40 1 4.7230 -9.7594 -2.7260 41 1 4.7162 -10.1115 -0.2139 42 1 4.9339 -8.2979 0.0408 43 1 5.1827 -6.0383 -2.1315 44 1 4.9220 -7.4829 -1.1193 45 1 5.2373 -6.2015 0.9225 46 1 4.0973 -5.2815 -0.0939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001719979310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:48 Heat of formation + Delta-G solvation = 23.292036 kcal Electronic energy + Delta-G solvation = -27487.945500 eV Core-core repulsion = 23700.224515 eV Total energy + Delta-G solvation = -3787.720985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.39592 -40.88600 -38.58112 -38.37051 -36.63437 -34.76826 -34.64799 -32.72645 -30.90557 -28.89792 -27.82669 -25.93445 -25.18460 -23.95556 -23.55376 -22.89700 -22.49543 -20.98513 -20.10615 -19.27494 -18.26586 -17.56352 -17.27088 -17.22264 -16.98146 -16.71924 -16.45270 -16.28144 -15.96468 -15.60875 -15.11768 -14.99404 -14.85957 -14.73725 -14.48639 -14.23790 -13.56782 -13.39872 -13.33692 -13.26885 -13.01947 -12.77365 -12.69525 -12.51017 -12.40633 -12.26730 -12.20200 -12.07248 -11.86378 -11.67134 -11.16158 -11.03980 -10.89436 -10.58316 -10.50077 -10.41240 -10.33278 -9.44734 -8.98980 -8.50237 -6.20702 0.96470 1.31571 1.33593 1.43726 1.49887 1.51363 1.74531 2.09066 2.25416 2.62293 2.69073 2.88327 3.21319 3.28464 3.41259 3.43909 3.67493 3.70997 3.89273 3.97329 4.03835 4.08966 4.14720 4.22286 4.26127 4.33709 4.34845 4.39626 4.42191 4.52716 4.59237 4.62968 4.73619 4.81423 4.86594 4.88033 5.02588 5.06236 5.12510 5.30768 5.33395 5.36479 5.44902 5.72549 6.12004 6.13807 6.30838 6.95568 7.01332 7.06922 8.61694 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026041 B = 0.002450 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.986401 B =11423.694455 C =12224.189505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.047 3.953 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.261 1.261 6 H -0.239 1.239 7 C -0.523 4.523 8 H 0.068 0.932 9 S -0.182 6.182 10 C -0.105 4.105 11 C 0.535 3.465 12 O -0.562 6.562 13 N -0.606 5.606 14 C 0.105 3.895 15 C 0.106 3.894 16 N -0.607 5.607 17 C 0.546 3.454 18 O -0.564 6.564 19 C -0.147 4.147 20 C -0.102 4.102 21 C -0.179 4.179 22 C -0.178 4.178 23 C -0.165 4.165 24 C -0.153 4.153 25 C 0.032 3.968 26 C 0.082 3.918 27 H 0.276 0.724 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.135 0.865 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.082 0.918 44 H 0.175 0.825 45 H 0.093 0.907 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.956 -25.048 -3.253 27.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.185 1.185 6 H -0.163 1.163 7 C -0.671 4.671 8 H 0.086 0.914 9 S 0.045 5.955 10 C -0.256 4.256 11 C 0.323 3.677 12 O -0.440 6.440 13 N -0.341 5.341 14 C -0.019 4.019 15 C -0.017 4.017 16 N -0.340 5.340 17 C 0.337 3.663 18 O -0.443 6.443 19 C -0.150 4.150 20 C -0.120 4.120 21 C -0.215 4.215 22 C -0.215 4.215 23 C -0.201 4.201 24 C -0.190 4.190 25 C -0.089 4.089 26 C -0.041 4.041 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.153 0.847 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.101 0.899 44 H 0.191 0.809 45 H 0.111 0.889 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.557 -23.678 -3.177 26.989 hybrid contribution -0.662 0.121 -0.024 0.673 sum 11.895 -23.557 -3.202 26.583 Atomic orbital electron populations 1.70000 1.07154 1.28931 1.49212 1.25499 0.95221 1.02051 0.93083 0.85924 0.80689 0.80016 0.80106 1.18835 1.18538 1.16265 1.22425 0.89925 0.96760 1.57981 0.91398 1.84844 1.06811 1.06312 1.97574 1.23279 0.95324 0.99497 1.07509 1.20126 0.89797 0.82694 0.75054 1.90685 1.59362 1.43337 1.50588 1.48002 1.07490 1.05100 1.73483 1.21930 0.80692 1.00428 0.98830 1.21872 0.95271 0.86489 0.98110 1.47991 1.07727 1.04970 1.73289 1.20062 0.88323 0.83230 0.74698 1.90628 1.18280 1.84455 1.50947 1.20937 0.89601 0.93107 1.11381 1.21526 0.90421 0.94551 1.05532 1.23082 1.00764 1.02425 0.95270 1.22899 1.01031 1.02614 0.94909 1.23948 0.94899 1.05991 0.95261 1.23636 0.94500 1.06123 0.94709 1.24182 0.80895 1.04919 0.98896 1.22641 0.94779 0.86681 0.99950 0.91422 0.86347 0.86601 0.90305 0.89187 0.88315 0.90990 0.84710 0.89391 0.88206 0.87925 0.90702 0.85544 0.85586 0.85178 0.85934 0.89938 0.80914 0.88889 0.86757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.21 13.97 21.65 0.30 -53.91 16 2 C 0.05 2.69 5.50 84.86 0.47 3.15 16 3 Si 0.91 44.15 27.74 68.60 1.90 46.05 16 4 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.24 -11.61 6.74 99.48 0.67 -10.94 16 7 C -0.52 -29.22 10.04 67.95 0.68 -28.53 16 8 H 0.07 3.94 8.03 -2.91 -0.02 3.92 16 9 S -0.18 -8.88 18.55 -56.49 -1.05 -9.92 16 10 C -0.11 -3.68 4.50 71.24 0.32 -3.36 16 11 C 0.54 17.69 7.72 87.66 0.68 18.37 16 12 O -0.56 -23.46 15.27 -3.01 -0.05 -23.50 16 13 N -0.61 -14.22 2.95 -817.10 -2.41 -16.63 16 14 C 0.10 2.30 6.59 86.42 0.57 2.87 16 15 C 0.11 2.10 6.60 86.41 0.57 2.67 16 16 N -0.61 -10.39 2.94 -817.07 -2.40 -12.79 16 17 C 0.55 10.63 7.15 87.66 0.63 11.26 16 18 O -0.56 -14.78 11.35 -3.04 -0.03 -14.81 16 19 C -0.15 -1.91 2.47 -52.93 -0.13 -2.04 16 20 C -0.10 -1.38 5.85 -10.80 -0.06 -1.45 16 21 C -0.18 -3.11 9.66 30.59 0.30 -2.81 16 22 C -0.18 -3.06 9.67 30.60 0.30 -2.76 16 23 C -0.16 -1.16 9.02 30.59 0.28 -0.89 16 24 C -0.15 -1.02 9.04 30.59 0.28 -0.75 16 25 C 0.03 0.39 4.07 86.58 0.35 0.74 16 26 C 0.08 1.22 6.30 86.58 0.55 1.77 16 27 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 28 H 0.12 3.64 7.72 -2.40 -0.02 3.62 16 29 H 0.12 3.64 7.91 -2.39 -0.02 3.62 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.09 2.31 6.99 -2.39 -0.02 2.29 16 32 H 0.10 2.08 7.00 -2.39 -0.02 2.07 16 33 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.14 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.09 2.03 5.98 -2.38 -0.01 2.02 16 36 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.69 6.57 -2.39 -0.02 1.67 16 39 H 0.13 0.84 4.95 -2.39 -0.01 0.83 16 40 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.13 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.12 0.68 5.59 -2.38 -0.01 0.67 16 43 H 0.08 1.01 7.90 -2.38 -0.02 0.99 16 44 H 0.17 1.23 1.67 -6.42 -0.01 1.22 16 45 H 0.09 1.12 7.92 -2.39 -0.02 1.10 16 46 H 0.11 1.53 5.91 -2.39 -0.01 1.52 16 Total: -1.00 -76.39 367.35 2.99 -73.39 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.97 Total: 13.89 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 5.76 Total: -1.76 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -4.51 Total: -83.33 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -0.08 Total: -38.32 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.90 Total: 46.05 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.92 kcal Total: -76.39 2.99 -73.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719979310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.686 kcal (2) G-P(sol) polarization free energy of solvation -76.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds