Wall clock time and date at job start Tue Mar 31 2020 20:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 119.99730 * 2 1 4 4 H 1.48506 * 109.47304 * 269.99730 * 3 2 1 5 5 H 1.48499 * 109.47395 * 30.00131 * 3 2 1 6 6 H 1.48501 * 109.47275 * 150.00087 * 3 2 1 7 7 C 1.38803 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99963 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99938 * 180.02562 * 7 2 1 10 10 C 1.80997 * 99.99951 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46980 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00194 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99706 * 180.02562 * 11 10 9 14 14 C 1.47540 * 125.66031 * 359.97438 * 13 11 10 15 15 C 1.55157 * 105.00870 * 203.91823 * 14 13 11 16 16 C 1.53916 * 101.43416 * 324.38046 * 15 14 13 17 17 C 1.52565 * 115.96873 * 163.60161 * 16 15 14 18 18 N 1.47842 * 85.66105 * 94.98237 * 17 16 15 19 19 C 1.34777 * 134.36506 * 203.62422 * 18 17 16 20 20 O 1.21277 * 120.00529 * 179.97438 * 19 18 17 21 21 C 1.50711 * 119.99663 * 0.02562 * 19 18 17 22 22 C 1.53781 * 113.60884 * 277.49429 * 21 19 18 23 23 C 1.53788 * 87.07556 * 220.01819 * 22 21 19 24 24 C 1.53780 * 87.08163 * 25.43740 * 23 22 21 25 25 C 1.47849 * 91.27665 * 23.63067 * 18 17 16 26 26 C 1.47365 * 125.65651 * 180.02562 * 13 11 10 27 27 H 0.96996 * 120.00494 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47242 * 59.99987 * 10 9 7 29 29 H 1.09004 * 109.47234 * 299.99420 * 10 9 7 30 30 H 1.09003 * 110.33340 * 322.80149 * 14 13 11 31 31 H 1.09002 * 110.33204 * 84.93589 * 14 13 11 32 32 H 1.09000 * 111.03688 * 82.39851 * 15 14 13 33 33 H 1.09005 * 111.03487 * 206.28580 * 15 14 13 34 34 H 1.09002 * 113.84053 * 209.16925 * 17 16 15 35 35 H 1.09003 * 113.83754 * 340.79610 * 17 16 15 36 36 H 1.08997 * 112.84735 * 48.80321 * 21 19 18 37 37 H 1.09000 * 113.61714 * 334.56602 * 22 21 19 38 38 H 1.08994 * 113.61179 * 105.47816 * 22 21 19 39 39 H 1.08996 * 113.61516 * 270.88278 * 23 22 21 40 40 H 1.09006 * 113.68817 * 139.99603 * 23 22 21 41 41 H 1.09006 * 113.60920 * 220.01805 * 24 23 22 42 42 H 1.08998 * 113.61625 * 89.11549 * 24 23 22 43 43 H 1.08999 * 113.84012 * 222.18886 * 25 18 17 44 44 H 1.08998 * 113.95973 * 90.56574 * 25 18 17 45 45 H 1.09002 * 109.98231 * 297.31004 * 26 13 11 46 46 H 1.09004 * 109.98723 * 58.57194 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1373 0.0014 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9844 0.0025 11 6 5.5732 -3.2323 0.0026 12 8 6.3441 -2.2961 0.0014 13 7 6.0458 -4.4946 0.0030 14 6 5.2248 -5.7204 0.0039 15 6 6.1398 -6.8163 0.6117 16 6 7.5157 -6.4077 0.0560 17 6 8.7263 -7.0268 0.7481 18 7 8.6728 -8.0486 -0.3190 19 6 9.1039 -9.3209 -0.4279 20 8 8.9158 -9.9393 -1.4541 21 6 9.8189 -9.9756 0.7260 22 6 11.3161 -9.6319 0.7977 23 6 11.5544 -11.1016 1.1828 24 6 10.2457 -11.4257 0.4433 25 6 7.9580 -7.1188 -1.2193 26 6 7.4684 -4.8791 0.0037 27 1 -0.4851 0.8400 0.0004 28 1 3.6441 -3.4321 -0.8873 29 1 3.6435 -3.4309 0.8927 30 1 4.3378 -5.5818 0.6222 31 1 4.9387 -5.9854 -1.0139 32 1 6.1300 -6.7745 1.7008 33 1 5.8523 -7.8065 0.2578 34 1 9.6192 -6.4024 0.7159 35 1 8.5130 -7.4172 1.7432 36 1 9.2951 -9.8514 1.6738 37 1 11.7477 -9.3573 -0.1648 38 1 11.5647 -8.9270 1.5909 39 1 11.5065 -11.2850 2.2562 40 1 12.4384 -11.5384 0.7179 41 1 9.6301 -12.1687 0.9505 42 1 10.3846 -11.6414 -0.6160 43 1 7.1404 -7.5817 -1.7718 44 1 8.6153 -6.5216 -1.8513 45 1 7.9510 -4.5228 -0.9063 46 1 7.9671 -4.4606 0.8780 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756825310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:59 Heat of formation + Delta-G solvation = -33.770745 kcal Electronic energy + Delta-G solvation = -26383.598072 eV Core-core repulsion = 22593.402659 eV Total energy + Delta-G solvation = -3790.195413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.19430 -40.87347 -39.89431 -38.13100 -37.03213 -34.67394 -32.70800 -30.93143 -30.49944 -28.40739 -27.85451 -27.18391 -26.58456 -25.96766 -24.22806 -21.42536 -20.82139 -20.17105 -19.82522 -19.33724 -18.30085 -18.06130 -17.52860 -17.14617 -17.04883 -16.77284 -16.34015 -16.15765 -15.77067 -15.54324 -14.95196 -14.88679 -14.64710 -14.38841 -14.09088 -13.76176 -13.75056 -13.67088 -13.44613 -13.34667 -13.31512 -13.01296 -12.96706 -12.68573 -12.67251 -12.29771 -12.12000 -12.08716 -11.86557 -11.56291 -11.43845 -11.30015 -11.17122 -11.03799 -10.65763 -10.54009 -9.77348 -9.73744 -9.00557 -8.51475 -6.22723 0.96463 1.31792 1.45366 1.51808 1.53380 1.56244 1.75629 2.04864 2.25121 2.67655 2.86779 3.14231 3.27175 3.36554 3.56298 3.61790 3.68569 3.77829 3.87021 3.91490 4.08976 4.15805 4.27418 4.35204 4.41321 4.46506 4.54081 4.58629 4.64687 4.66998 4.70041 4.77685 4.80134 4.85349 4.85586 4.89459 5.02548 5.07881 5.09055 5.11347 5.18028 5.28880 5.51470 5.70628 6.11294 6.32463 6.65481 6.93562 7.05590 7.10744 8.60801 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.039444 B = 0.001883 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.701093 B =14862.685424 C =15162.069993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.236 1.236 7 C -0.529 4.529 8 H 0.062 0.938 9 S -0.174 6.174 10 C -0.104 4.104 11 C 0.549 3.451 12 O -0.562 6.562 13 N -0.615 5.615 14 C 0.089 3.911 15 C -0.095 4.095 16 C -0.096 4.096 17 C 0.129 3.871 18 N -0.642 5.642 19 C 0.538 3.462 20 O -0.594 6.594 21 C -0.130 4.130 22 C -0.118 4.118 23 C -0.132 4.132 24 C -0.129 4.129 25 C 0.113 3.887 26 C 0.124 3.876 27 H 0.277 0.723 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.137 0.863 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.060 -22.937 5.980 33.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.160 1.160 7 C -0.677 4.677 8 H 0.080 0.920 9 S 0.052 5.948 10 C -0.255 4.255 11 C 0.337 3.663 12 O -0.441 6.441 13 N -0.350 5.350 14 C -0.033 4.033 15 C -0.133 4.133 16 C -0.097 4.097 17 C 0.007 3.993 18 N -0.376 5.376 19 C 0.329 3.671 20 O -0.475 6.475 21 C -0.151 4.151 22 C -0.156 4.156 23 C -0.170 4.170 24 C -0.167 4.167 25 C -0.009 4.009 26 C 0.001 3.999 27 H 0.086 0.914 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.155 0.845 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.111 0.889 45 H 0.087 0.913 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 23.961 -21.934 5.427 32.934 hybrid contribution -1.463 -0.190 -0.636 1.607 sum 22.498 -22.124 4.791 31.915 Atomic orbital electron populations 1.70011 1.07289 1.29030 1.49059 1.25559 0.95272 1.02244 0.92868 0.85872 0.80730 0.79607 0.80193 1.18792 1.18293 1.15963 1.22446 0.90187 0.96694 1.58354 0.91967 1.84693 1.06498 1.06008 1.97569 1.23218 0.95688 0.99537 1.07009 1.19580 0.89332 0.81771 0.75596 1.90693 1.59342 1.42990 1.51029 1.48462 1.08743 1.04687 1.73096 1.22693 0.95256 0.82931 1.02378 1.22466 0.90689 0.98059 1.02059 1.22388 0.97349 0.92786 0.97212 1.23266 0.96769 0.86015 0.93219 1.50200 1.57470 1.10548 1.19357 1.20871 0.76928 0.80115 0.89151 1.90681 1.58952 1.64306 1.33564 1.22888 0.97168 0.97616 0.97410 1.22795 0.91715 0.98630 1.02442 1.22833 0.97158 0.95356 1.01609 1.22835 0.98203 0.94660 1.01006 1.23154 0.95472 0.88436 0.93878 1.21744 0.81624 0.93465 1.03034 0.91363 0.87449 0.86982 0.89462 0.90360 0.87951 0.88582 0.87156 0.86652 0.84524 0.91330 0.88428 0.87847 0.90860 0.90308 0.91439 0.90444 0.88890 0.91272 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.42 13.97 21.65 0.30 -55.12 16 2 C 0.05 2.69 5.50 84.86 0.47 3.15 16 3 Si 0.91 44.65 27.74 68.60 1.90 46.55 16 4 H -0.26 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.24 -11.46 6.74 99.48 0.67 -10.79 16 7 C -0.53 -30.60 10.04 67.96 0.68 -29.91 16 8 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 9 S -0.17 -8.74 18.55 -56.49 -1.05 -9.79 16 10 C -0.10 -3.88 5.17 71.24 0.37 -3.51 16 11 C 0.55 18.67 7.87 87.66 0.69 19.36 16 12 O -0.56 -23.63 16.19 -3.04 -0.05 -23.68 16 13 N -0.62 -14.17 3.34 -812.64 -2.71 -16.89 16 14 C 0.09 1.42 6.71 86.92 0.58 2.00 16 15 C -0.10 -0.95 6.42 31.64 0.20 -0.74 16 16 C -0.10 -1.01 0.98 -52.08 -0.05 -1.06 16 17 C 0.13 0.83 7.93 85.98 0.68 1.51 16 18 N -0.64 -8.53 3.62 -859.75 -3.11 -11.64 16 19 C 0.54 9.76 7.58 87.66 0.66 10.42 16 20 O -0.59 -16.76 16.63 -3.02 -0.05 -16.81 16 21 C -0.13 -1.39 3.89 -11.01 -0.04 -1.43 16 22 C -0.12 -0.95 7.63 31.12 0.24 -0.71 16 23 C -0.13 -0.95 8.08 31.12 0.25 -0.70 16 24 C -0.13 -1.57 7.41 31.12 0.23 -1.34 16 25 C 0.11 1.54 8.08 85.98 0.69 2.23 16 26 C 0.12 2.07 6.38 86.22 0.55 2.62 16 27 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 28 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 29 H 0.11 3.84 7.85 -2.39 -0.02 3.82 16 30 H 0.09 1.37 7.49 -2.39 -0.02 1.36 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.89 8.06 -2.38 -0.02 0.87 16 34 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.12 0.23 8.12 -2.39 -0.02 0.21 16 36 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 38 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.07 1.19 7.43 -2.39 -0.02 1.17 16 43 H 0.08 1.22 8.12 -2.39 -0.02 1.20 16 44 H 0.09 1.22 8.00 -2.39 -0.02 1.20 16 45 H 0.07 1.25 7.86 -2.39 -0.02 1.23 16 46 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 Total: -1.00 -81.16 389.37 2.37 -78.79 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 0.93 Total: 6.70 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 6.21 Total: 1.88 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -5.52 Total: -83.64 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -0.10 Total: -40.49 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.90 Total: 46.55 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.05 Total: -9.79 kcal Total: -81.16 2.37 -78.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756825310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.016 kcal (2) G-P(sol) polarization free energy of solvation -81.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds