Wall clock time and date at job start Tue Mar 31 2020 20:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 120.00057 * 2 1 4 4 H 1.48492 * 109.46901 * 239.99850 * 3 2 1 5 5 H 1.48500 * 109.46873 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47069 * 119.99895 * 3 2 1 7 7 C 1.38797 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00602 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99578 * 359.97438 * 7 2 1 10 10 C 1.81007 * 99.99994 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47039 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00204 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99946 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99905 * 180.27757 * 13 11 10 15 15 H 1.08995 * 110.64094 * 36.40809 * 14 13 11 16 16 C 1.55159 * 110.71933 * 273.26986 * 14 13 11 17 17 C 1.54907 * 101.58395 * 206.13878 * 16 14 13 18 18 N 1.47424 * 104.83259 * 37.00381 * 17 16 14 19 19 C 1.34777 * 125.64926 * 155.82654 * 18 17 16 20 20 O 1.21284 * 120.00000 * 353.12565 * 19 18 17 21 21 C 1.50694 * 120.00143 * 173.12891 * 19 18 17 22 22 C 1.52997 * 115.55095 * 180.47440 * 21 19 18 23 23 C 1.53001 * 117.50158 * 34.19511 * 22 21 19 24 24 C 1.52999 * 60.00245 * 252.51419 * 23 22 21 25 25 C 1.52995 * 117.50238 * 34.79457 * 21 19 18 26 26 C 1.53001 * 117.49974 * 326.13456 * 21 19 18 27 27 C 1.47026 * 108.70258 * 335.87721 * 18 17 16 28 28 H 0.97000 * 120.00301 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46743 * 60.00667 * 10 9 7 30 30 H 1.08996 * 109.47137 * 300.00432 * 10 9 7 31 31 H 0.96998 * 119.99469 * 359.97438 * 13 11 10 32 32 H 1.09007 * 110.99891 * 324.21173 * 16 14 13 33 33 H 1.09001 * 111.00519 * 88.02268 * 16 14 13 34 34 H 1.08999 * 110.36722 * 155.84809 * 17 16 14 35 35 H 1.09003 * 110.36185 * 278.06118 * 17 16 14 36 36 H 1.09000 * 115.55489 * 179.91599 * 22 21 19 37 37 H 1.08996 * 117.49886 * 0.02562 * 23 22 21 38 38 H 1.09000 * 117.49814 * 145.02591 * 23 22 21 39 39 H 1.08999 * 117.49949 * 252.50914 * 24 23 22 40 40 H 1.09008 * 117.51466 * 107.47964 * 24 23 22 41 41 H 1.08996 * 117.49747 * 0.02562 * 25 21 19 42 42 H 1.09000 * 117.49597 * 145.02171 * 25 21 19 43 43 H 1.08997 * 117.50302 * 214.98536 * 26 21 19 44 44 H 1.09004 * 117.49660 * 359.97438 * 26 21 19 45 45 H 1.09000 * 109.87793 * 241.63469 * 27 18 17 46 46 H 1.09001 * 109.87947 * 120.47740 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0019 10 6 2.5159 -3.8914 0.0013 11 6 1.9874 -5.3027 0.0018 12 8 0.7911 -5.5023 0.0019 13 7 2.8442 -6.3431 0.0020 14 6 2.3305 -7.7151 -0.0038 15 1 1.4292 -7.7853 -0.6127 16 6 2.0551 -8.2042 1.4427 17 6 2.2055 -9.7380 1.2864 18 7 3.3070 -9.9129 0.3223 19 6 4.0914 -11.0036 0.2152 20 8 4.0012 -11.8978 1.0297 21 6 5.0806 -11.1122 -0.9164 22 6 5.9103 -12.3973 -0.9466 23 6 5.2358 -13.6852 -0.4699 24 6 6.3044 -13.0155 0.3964 25 6 5.7561 -9.8239 -1.3904 26 6 4.6884 -10.4930 -2.2595 27 6 3.4090 -8.6998 -0.5022 28 1 -0.4850 0.8400 -0.0004 29 1 3.1251 -3.7310 0.8909 30 1 3.1239 -3.7317 -0.8891 31 1 3.8010 -6.1834 0.0015 32 1 2.7962 -7.8077 2.1369 33 1 1.0460 -7.9402 1.7590 34 1 2.4624 -10.1934 2.2427 35 1 1.2848 -10.1715 0.8956 36 1 6.6248 -12.4765 -1.7659 37 1 4.2007 -13.6170 -0.1351 38 1 5.5062 -14.6120 -0.9758 39 1 7.2778 -13.5017 0.4604 40 1 5.9727 -12.5064 1.3014 41 1 5.4854 -8.8978 -0.8835 42 1 6.7916 -9.8919 -1.7240 43 1 5.0218 -11.0009 -3.1644 44 1 3.7146 -10.0075 -2.3246 45 1 3.2303 -8.9469 -1.5487 46 1 4.3978 -8.2558 -0.3877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293581069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:50 Heat of formation + Delta-G solvation = 11.984162 kcal Electronic energy + Delta-G solvation = -26667.404716 eV Core-core repulsion = 22879.193385 eV Total energy + Delta-G solvation = -3788.211331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.34881 -39.57615 -38.09282 -37.34216 -35.71578 -34.03032 -32.47088 -31.11594 -29.73660 -28.21993 -25.72233 -25.46812 -23.53932 -23.31862 -22.35399 -22.01955 -21.38567 -20.51872 -19.46686 -17.98732 -17.07646 -16.93686 -16.42410 -15.99310 -15.70924 -15.28925 -15.03936 -14.91619 -14.84033 -14.33673 -14.23231 -14.03837 -13.86237 -13.33199 -13.12500 -13.04105 -12.67165 -12.55456 -12.33176 -11.97293 -11.81940 -11.73583 -11.49422 -11.42528 -11.23536 -11.09455 -11.07393 -11.03568 -10.80863 -10.44040 -9.90408 -9.86086 -9.79816 -9.53985 -9.13956 -9.08272 -8.93337 -8.30166 -6.55403 -6.25711 -3.96987 2.04578 2.42619 2.94264 2.95468 3.20578 3.23719 3.24347 3.27031 3.58439 3.81981 3.87000 4.01133 4.09463 4.16442 4.22228 4.47982 4.49491 4.59308 4.77634 4.83173 4.86322 4.93359 4.99221 5.01864 5.08885 5.09708 5.23023 5.37385 5.44055 5.46120 5.52902 5.53188 5.57076 5.63498 5.65014 5.72481 5.80560 5.86609 5.96906 6.00198 6.06336 6.13118 6.44251 7.08596 7.52564 7.55527 7.79427 8.30699 8.46620 9.19590 10.81576 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027947 B = 0.001981 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.666968 B =14131.712529 C =14665.123149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.536 3.464 12 O -0.512 6.512 13 N -0.731 5.731 14 C 0.137 3.863 15 H 0.106 0.894 16 C -0.146 4.146 17 C 0.107 3.893 18 N -0.616 5.616 19 C 0.568 3.432 20 O -0.527 6.527 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.168 4.168 24 C -0.168 4.168 25 C -0.171 4.171 26 C -0.164 4.164 27 C 0.073 3.927 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.399 0.601 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.093 0.907 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.850 -23.354 -2.906 26.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.305 4.305 11 C 0.322 3.678 12 O -0.386 6.386 13 N -0.386 5.386 14 C 0.031 3.969 15 H 0.124 0.876 16 C -0.185 4.185 17 C -0.015 4.015 18 N -0.351 5.351 19 C 0.357 3.643 20 O -0.403 6.403 21 C -0.126 4.126 22 C -0.135 4.135 23 C -0.205 4.205 24 C -0.205 4.205 25 C -0.208 4.208 26 C -0.200 4.200 27 C -0.050 4.050 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.233 0.767 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.110 0.890 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.659 -24.127 -2.470 26.492 hybrid contribution 2.500 1.403 -0.053 2.867 sum 13.159 -22.723 -2.523 26.379 Atomic orbital electron populations 1.69998 1.05952 1.27634 1.46645 1.24991 0.95035 0.99046 0.94480 0.86223 0.79246 0.81222 0.78810 1.19926 1.20797 1.19929 1.22817 0.94865 0.91618 1.59231 0.90949 1.85409 1.04731 0.96339 1.96743 1.23536 1.06733 0.95158 1.05032 1.20344 0.86499 0.86200 0.74763 1.90714 1.15296 1.85494 1.47074 1.45970 1.09973 1.04558 1.78123 1.21858 0.96967 0.81194 0.96902 0.87582 1.23269 1.04302 0.93601 0.97348 1.22278 0.89334 0.96299 0.93602 1.48318 1.34219 1.15765 1.36799 1.19169 0.79715 0.80370 0.85032 1.90661 1.68547 1.38575 1.42567 1.20886 1.00658 0.95774 0.95282 1.21380 1.01738 0.91025 0.99386 1.23038 0.99799 0.94462 1.03160 1.23045 0.98803 1.03607 0.95010 1.23623 0.99071 0.95413 1.02652 1.23458 1.00686 1.02720 0.93148 1.23017 0.99920 0.85786 0.96285 0.92082 0.89137 0.89097 0.76656 0.90085 0.88695 0.89891 0.90884 0.87196 0.87519 0.89499 0.89502 0.87489 0.86640 0.87492 0.87470 0.86953 0.88977 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.63 13.22 55.49 0.73 -24.89 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.93 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.85 9.50 30.94 0.29 -14.56 16 8 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 9 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 10 C -0.15 -2.86 6.16 36.01 0.22 -2.64 16 11 C 0.54 8.90 7.85 -10.99 -0.09 8.81 16 12 O -0.51 -10.59 15.59 5.55 0.09 -10.50 16 13 N -0.73 -8.05 5.20 -52.04 -0.27 -8.32 16 14 C 0.14 1.32 3.24 -66.10 -0.21 1.11 16 15 H 0.11 1.18 7.69 -51.93 -0.40 0.78 16 16 C -0.15 -1.39 6.77 -24.58 -0.17 -1.56 16 17 C 0.11 0.98 6.94 -2.53 -0.02 0.96 16 18 N -0.62 -5.55 3.32 -170.52 -0.57 -6.12 16 19 C 0.57 5.94 7.32 -10.99 -0.08 5.86 16 20 O -0.53 -6.97 12.06 5.55 0.07 -6.91 16 21 C -0.12 -1.00 2.46 -155.67 -0.38 -1.38 16 22 C -0.12 -0.96 5.85 -90.62 -0.53 -1.49 16 23 C -0.17 -1.53 9.66 -26.73 -0.26 -1.79 16 24 C -0.17 -1.54 9.66 -26.73 -0.26 -1.80 16 25 C -0.17 -1.01 9.34 -26.70 -0.25 -1.26 16 26 C -0.16 -0.98 9.31 -26.70 -0.25 -1.23 16 27 C 0.07 0.52 4.85 -3.07 -0.01 0.51 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 30 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 31 H 0.40 3.21 8.31 -40.82 -0.34 2.87 16 32 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.81 7.97 -51.93 -0.41 0.39 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.11 1.19 6.29 -51.93 -0.33 0.87 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.11 1.21 6.27 -51.92 -0.33 0.88 16 41 H 0.12 0.62 4.40 -51.93 -0.23 0.39 16 42 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.11 0.65 4.97 -51.93 -0.26 0.39 16 45 H 0.09 0.57 4.86 -51.93 -0.25 0.32 16 46 H 0.09 0.51 4.77 -51.93 -0.25 0.26 16 LS Contribution 378.30 15.07 5.70 5.70 Total: -1.00 -34.43 378.30 -10.14 -44.56 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.56 Total: 2.80 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -2.09 Total: -8.49 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: -0.10 Total: -39.33 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: 0.15 Total: -17.41 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.43 -10.14 -44.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293581069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.545 kcal (2) G-P(sol) polarization free energy of solvation -34.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds