Wall clock time and date at job start Tue Mar 31 2020 20:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86806 * 119.99919 * 2 1 4 4 H 1.48500 * 109.47272 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46788 * 299.99853 * 3 2 1 6 6 H 1.48500 * 109.47105 * 59.99726 * 3 2 1 7 7 C 1.38800 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99986 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99635 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99575 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47021 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99849 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99841 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99861 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47341 * 184.98123 * 14 13 11 16 16 H 1.09006 * 112.74191 * 315.43069 * 15 14 13 17 17 C 1.53502 * 113.46720 * 86.24981 * 15 14 13 18 18 C 1.53240 * 83.43042 * 140.67949 * 17 15 14 19 19 N 1.47065 * 88.08470 * 334.10446 * 18 17 15 20 20 C 1.34776 * 136.05989 * 207.19996 * 19 18 17 21 21 O 1.21282 * 119.99796 * 174.86662 * 20 19 18 22 22 C 1.50695 * 119.99765 * 354.87516 * 20 19 18 23 23 C 1.53006 * 119.75042 * 249.83350 * 22 20 19 24 24 C 1.53000 * 60.38081 * 248.87903 * 23 22 20 25 25 H 1.09001 * 119.75419 * 111.12079 * 24 23 22 26 26 C 1.54263 * 118.20038 * 266.38815 * 24 23 22 27 27 C 1.54889 * 104.19931 * 87.78498 * 26 24 23 28 28 C 1.54263 * 117.41742 * 45.28622 * 22 20 19 29 29 H 0.96996 * 120.00031 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47019 * 59.99796 * 10 9 7 31 31 H 1.08998 * 109.47058 * 299.99704 * 10 9 7 32 32 H 0.96996 * 120.00650 * 359.97438 * 13 11 10 33 33 H 1.09004 * 109.46921 * 64.98135 * 14 13 11 34 34 H 1.08998 * 109.47234 * 304.98430 * 14 13 11 35 35 H 1.09001 * 114.20680 * 254.43514 * 17 15 14 36 36 H 1.08996 * 114.20728 * 27.06790 * 17 15 14 37 37 H 1.08994 * 113.38538 * 219.29211 * 18 17 15 38 38 H 1.09003 * 113.46980 * 88.93048 * 18 17 15 39 39 H 1.08996 * 117.46371 * 356.48146 * 23 22 20 40 40 H 1.08999 * 117.45881 * 141.28100 * 23 22 20 41 41 H 1.09004 * 110.48642 * 329.10495 * 26 24 23 42 42 H 1.09000 * 110.60217 * 206.52369 * 26 24 23 43 43 H 1.08995 * 110.75767 * 203.74082 * 27 26 24 44 44 H 1.09004 * 110.90949 * 80.44590 * 27 26 24 45 45 H 1.08998 * 110.48557 * 235.04810 * 28 22 20 46 46 H 1.08995 * 110.48610 * 357.56120 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0021 11 6 1.9875 -5.3027 0.0017 12 8 0.7912 -5.5022 0.0009 13 7 2.8443 -6.3430 0.0033 14 6 2.3306 -7.7150 0.0034 15 6 3.4974 -8.6964 0.1305 16 1 4.3364 -8.4397 -0.5163 17 6 3.9068 -8.9744 1.5836 18 6 4.0800 -10.4096 1.0750 19 7 3.0906 -10.1062 0.0301 20 6 2.1991 -10.8096 -0.6959 21 8 1.4365 -10.2339 -1.4429 22 6 2.1499 -12.3112 -0.5792 23 6 2.6149 -13.1793 -1.7502 24 6 1.1312 -13.1428 -1.3784 25 1 0.4164 -12.6693 -2.0514 26 6 0.5937 -14.2232 -0.4174 27 6 0.8294 -13.6283 0.9931 28 6 2.1958 -12.9154 0.8394 29 1 -0.4850 0.8400 -0.0004 30 1 3.1239 -3.7308 0.8925 31 1 3.1252 -3.7317 -0.8875 32 1 3.8011 -6.1834 0.0043 33 1 1.7973 -7.9033 -0.9284 34 1 1.6505 -7.8482 0.8447 35 1 4.8352 -8.4904 1.8868 36 1 3.1005 -8.8510 2.3065 37 1 3.7432 -11.1641 1.7858 38 1 5.0764 -10.6140 0.6831 39 1 2.9166 -12.6696 -2.6651 40 1 3.1702 -14.0870 -1.5135 41 1 1.1511 -15.1522 -0.5376 42 1 -0.4696 -14.3928 -0.5872 43 1 0.8881 -14.4190 1.7410 44 1 0.0473 -12.9135 1.2495 45 1 3.0120 -13.6331 0.9221 46 1 2.3038 -12.1285 1.5858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505617708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:18 Heat of formation + Delta-G solvation = -8.220602 kcal Electronic energy + Delta-G solvation = -26259.397824 eV Core-core repulsion = 22470.310348 eV Total energy + Delta-G solvation = -3789.087476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.27683 -39.88935 -38.84193 -37.55656 -34.40294 -32.40784 -32.09979 -30.82786 -29.88046 -28.68163 -27.57229 -25.46053 -24.12910 -23.41051 -22.70969 -21.26975 -20.62837 -20.24197 -18.78938 -17.82306 -17.38008 -16.68175 -16.54135 -15.97986 -15.56633 -15.28373 -15.00358 -14.79021 -14.68572 -14.12404 -13.88358 -13.81389 -13.69071 -13.48275 -13.27018 -13.08447 -12.92337 -12.53224 -12.34276 -12.25531 -11.91141 -11.71968 -11.55842 -11.46327 -11.41589 -11.05749 -10.99827 -10.95621 -10.75734 -10.70624 -10.14455 -9.87723 -9.78524 -9.36961 -9.06949 -9.05809 -8.82791 -8.19811 -6.47348 -6.19576 -3.89917 2.22922 2.29364 3.09712 3.15204 3.20623 3.22889 3.30296 3.36077 3.78542 3.84431 3.94731 4.09427 4.14880 4.22144 4.31519 4.52352 4.59865 4.74859 4.76612 4.86524 4.89336 4.93456 4.98020 5.10811 5.15436 5.15565 5.20769 5.22842 5.27884 5.34182 5.41588 5.52048 5.59586 5.63004 5.65772 5.69083 5.76241 5.80651 5.92985 5.93874 6.07965 6.16054 6.61584 7.39042 7.61728 7.72625 7.91137 8.37420 8.66207 9.25613 10.87900 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028936 B = 0.001864 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.405930 B =15017.127677 C =15426.429314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.531 3.469 12 O -0.514 6.514 13 N -0.737 5.737 14 C 0.117 3.883 15 C 0.124 3.876 16 H 0.100 0.900 17 C -0.152 4.152 18 C 0.098 3.902 19 N -0.637 5.637 20 C 0.584 3.416 21 O -0.526 6.526 22 C -0.175 4.175 23 C -0.120 4.120 24 C -0.127 4.127 25 H 0.121 0.879 26 C -0.097 4.097 27 C -0.124 4.124 28 C -0.087 4.087 29 H 0.268 0.732 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.397 0.603 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.370 -31.144 3.288 33.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.317 3.683 12 O -0.388 6.388 13 N -0.392 5.392 14 C -0.008 4.008 15 C 0.021 3.979 16 H 0.117 0.883 17 C -0.190 4.190 18 C -0.025 4.025 19 N -0.374 5.374 20 C 0.373 3.627 21 O -0.402 6.402 22 C -0.178 4.178 23 C -0.157 4.157 24 C -0.146 4.146 25 H 0.139 0.861 26 C -0.134 4.134 27 C -0.162 4.162 28 C -0.124 4.124 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.230 0.770 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.587 -31.202 2.750 32.758 hybrid contribution 2.542 1.419 -0.090 2.913 sum 12.129 -29.783 2.659 32.268 Atomic orbital electron populations 1.70032 1.05950 1.27324 1.46952 1.25006 0.95033 0.99049 0.94596 0.86111 0.79558 0.81893 0.77881 1.19628 1.20587 1.20579 1.22911 0.94940 0.91654 1.58781 0.90865 1.85453 1.04953 0.96313 1.96698 1.23519 1.06539 0.95268 1.04914 1.20306 0.86522 0.86190 0.75251 1.90723 1.15385 1.85518 1.47152 1.45846 1.09843 1.05207 1.78304 1.21437 0.95170 0.80262 1.03966 1.22895 0.96515 0.82230 0.96300 0.88275 1.23554 1.03582 0.95900 0.95958 1.23025 0.92568 0.98250 0.88612 1.49533 1.37431 1.09412 1.41027 1.18928 0.78879 0.86813 0.78031 1.90766 1.40183 1.70978 1.38249 1.22280 1.10668 0.90246 0.94621 1.23105 0.96479 0.99754 0.96406 1.23417 0.92144 0.98365 1.00670 0.86093 1.22003 1.01413 0.96788 0.93231 1.22697 0.96905 0.99683 0.96888 1.22028 0.98204 0.99392 0.92818 0.92246 0.89175 0.89218 0.76959 0.90169 0.90963 0.88667 0.88199 0.89793 0.89510 0.87954 0.87945 0.91034 0.90697 0.90878 0.90975 0.90702 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.51 13.22 55.49 0.73 -25.78 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -15.41 9.50 30.94 0.29 -15.11 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.12 6.16 36.01 0.22 -2.89 16 11 C 0.53 10.39 7.85 -10.99 -0.09 10.30 16 12 O -0.51 -12.48 15.86 5.55 0.09 -12.39 16 13 N -0.74 -10.25 5.55 -60.30 -0.33 -10.59 16 14 C 0.12 1.59 5.41 -4.04 -0.02 1.57 16 15 C 0.12 1.12 4.09 -72.39 -0.30 0.82 16 16 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 17 C -0.15 -0.90 8.00 -26.35 -0.21 -1.11 16 18 C 0.10 0.52 7.78 -8.63 -0.07 0.45 16 19 N -0.64 -6.04 3.52 -177.59 -0.63 -6.66 16 20 C 0.58 7.03 7.60 -10.99 -0.08 6.95 16 21 O -0.53 -8.76 16.16 5.56 0.09 -8.67 16 22 C -0.18 -1.51 2.61 -154.54 -0.40 -1.91 16 23 C -0.12 -0.85 9.87 -26.73 -0.26 -1.11 16 24 C -0.13 -1.05 6.55 -89.50 -0.59 -1.64 16 25 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 26 C -0.10 -0.59 6.62 -25.07 -0.17 -0.76 16 27 C -0.12 -0.75 6.91 -24.74 -0.17 -0.92 16 28 C -0.09 -0.54 5.65 -25.07 -0.14 -0.68 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 31 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 32 H 0.40 4.01 8.48 -40.82 -0.35 3.66 16 33 H 0.08 1.38 7.02 -51.93 -0.36 1.02 16 34 H 0.07 1.09 7.88 -51.93 -0.41 0.68 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.68 7.94 -51.93 -0.41 0.27 16 37 H 0.08 0.34 5.80 -51.93 -0.30 0.04 16 38 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.46 5.66 -51.93 -0.29 0.17 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -38.42 390.58 -10.64 -49.06 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.17 Total: 0.53 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -2.08 Total: -4.05 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: -0.23 Total: -43.03 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.18 Total: -21.07 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.42 -10.64 -49.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505617708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.842 kcal (2) G-P(sol) polarization free energy of solvation -38.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds