Wall clock time and date at job start Tue Mar 31 2020 20:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86806 * 119.99919 * 2 1 4 4 H 1.48500 * 109.47272 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46788 * 299.99853 * 3 2 1 6 6 H 1.48500 * 109.47105 * 59.99726 * 3 2 1 7 7 C 1.38800 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99986 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99635 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99575 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47021 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99849 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99841 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99861 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47341 * 184.98123 * 14 13 11 16 16 H 1.09006 * 112.74191 * 315.43069 * 15 14 13 17 17 C 1.53502 * 113.46720 * 86.24981 * 15 14 13 18 18 C 1.53240 * 83.43042 * 140.67949 * 17 15 14 19 19 N 1.47065 * 88.08470 * 334.10446 * 18 17 15 20 20 C 1.34776 * 136.05989 * 207.19996 * 19 18 17 21 21 O 1.21282 * 119.99796 * 174.86662 * 20 19 18 22 22 C 1.50695 * 119.99765 * 354.87516 * 20 19 18 23 23 C 1.53006 * 119.75042 * 249.83350 * 22 20 19 24 24 C 1.53000 * 60.38081 * 248.87903 * 23 22 20 25 25 H 1.09001 * 119.75419 * 111.12079 * 24 23 22 26 26 C 1.54263 * 118.20038 * 266.38815 * 24 23 22 27 27 C 1.54889 * 104.19931 * 87.78498 * 26 24 23 28 28 C 1.54263 * 117.41742 * 45.28622 * 22 20 19 29 29 H 0.96996 * 120.00031 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47019 * 59.99796 * 10 9 7 31 31 H 1.08998 * 109.47058 * 299.99704 * 10 9 7 32 32 H 0.96996 * 120.00650 * 359.97438 * 13 11 10 33 33 H 1.09004 * 109.46921 * 64.98135 * 14 13 11 34 34 H 1.08998 * 109.47234 * 304.98430 * 14 13 11 35 35 H 1.09001 * 114.20680 * 254.43514 * 17 15 14 36 36 H 1.08996 * 114.20728 * 27.06790 * 17 15 14 37 37 H 1.08994 * 113.38538 * 219.29211 * 18 17 15 38 38 H 1.09003 * 113.46980 * 88.93048 * 18 17 15 39 39 H 1.08996 * 117.46371 * 356.48146 * 23 22 20 40 40 H 1.08999 * 117.45881 * 141.28100 * 23 22 20 41 41 H 1.09004 * 110.48642 * 329.10495 * 26 24 23 42 42 H 1.09000 * 110.60217 * 206.52369 * 26 24 23 43 43 H 1.08995 * 110.75767 * 203.74082 * 27 26 24 44 44 H 1.09004 * 110.90949 * 80.44590 * 27 26 24 45 45 H 1.08998 * 110.48557 * 235.04810 * 28 22 20 46 46 H 1.08995 * 110.48610 * 357.56120 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0021 11 6 1.9875 -5.3027 0.0017 12 8 0.7912 -5.5022 0.0009 13 7 2.8443 -6.3430 0.0033 14 6 2.3306 -7.7150 0.0034 15 6 3.4974 -8.6964 0.1305 16 1 4.3364 -8.4397 -0.5163 17 6 3.9068 -8.9744 1.5836 18 6 4.0800 -10.4096 1.0750 19 7 3.0906 -10.1062 0.0301 20 6 2.1991 -10.8096 -0.6959 21 8 1.4365 -10.2339 -1.4429 22 6 2.1499 -12.3112 -0.5792 23 6 2.6149 -13.1793 -1.7502 24 6 1.1312 -13.1428 -1.3784 25 1 0.4164 -12.6693 -2.0514 26 6 0.5937 -14.2232 -0.4174 27 6 0.8294 -13.6283 0.9931 28 6 2.1958 -12.9154 0.8394 29 1 -0.4850 0.8400 -0.0004 30 1 3.1239 -3.7308 0.8925 31 1 3.1252 -3.7317 -0.8875 32 1 3.8011 -6.1834 0.0043 33 1 1.7973 -7.9033 -0.9284 34 1 1.6505 -7.8482 0.8447 35 1 4.8352 -8.4904 1.8868 36 1 3.1005 -8.8510 2.3065 37 1 3.7432 -11.1641 1.7858 38 1 5.0764 -10.6140 0.6831 39 1 2.9166 -12.6696 -2.6651 40 1 3.1702 -14.0870 -1.5135 41 1 1.1511 -15.1522 -0.5376 42 1 -0.4696 -14.3928 -0.5872 43 1 0.8881 -14.4190 1.7410 44 1 0.0473 -12.9135 1.2495 45 1 3.0120 -13.6331 0.9221 46 1 2.3038 -12.1285 1.5858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505617708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:17 Heat of formation + Delta-G solvation = -35.880874 kcal Electronic energy + Delta-G solvation = -26260.597263 eV Core-core repulsion = 22470.310348 eV Total energy + Delta-G solvation = -3790.286915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.00946 -40.79942 -40.11791 -38.46267 -35.80735 -34.59231 -32.62708 -31.92237 -31.04674 -29.27075 -28.68345 -27.63747 -24.81261 -24.20357 -23.32090 -22.04557 -21.74042 -21.03138 -19.98768 -19.38677 -18.07972 -17.91047 -17.68977 -17.16458 -16.89071 -16.70766 -16.35157 -15.91998 -15.78604 -15.33086 -15.10686 -14.72303 -14.69331 -14.45709 -14.22397 -14.02806 -13.88270 -13.70834 -13.53033 -13.17088 -12.96479 -12.90562 -12.87414 -12.60390 -12.45556 -12.10960 -12.00817 -11.94315 -11.73441 -11.58332 -11.38104 -11.16726 -11.06977 -10.72058 -10.67677 -10.28049 -10.20843 -9.82199 -8.69240 -8.35325 -6.14381 1.22540 1.40176 1.41605 1.42758 1.54537 1.55248 1.66499 2.26104 2.31475 2.58008 2.98901 3.22776 3.30857 3.41135 3.53715 3.55663 3.66589 3.84701 3.93396 3.97794 4.00252 4.19873 4.28832 4.35955 4.37714 4.45596 4.48323 4.51070 4.57033 4.63986 4.65207 4.70342 4.75572 4.86092 4.95507 4.99869 5.02793 5.14984 5.17646 5.22768 5.23846 5.34171 5.41532 5.42463 6.19554 6.44198 6.65061 7.05074 7.05666 7.19612 8.74336 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028936 B = 0.001864 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.405930 B =15017.127677 C =15426.429314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.010 3.990 3 Si 1.003 2.997 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.086 0.914 9 S -0.160 6.160 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.571 6.571 13 N -0.704 5.704 14 C 0.124 3.876 15 C 0.118 3.882 16 H 0.125 0.875 17 C -0.138 4.138 18 C 0.103 3.897 19 N -0.642 5.642 20 C 0.569 3.431 21 O -0.593 6.593 22 C -0.183 4.183 23 C -0.100 4.100 24 C -0.148 4.148 25 H 0.088 0.912 26 C -0.090 4.090 27 C -0.126 4.126 28 C -0.079 4.079 29 H 0.271 0.729 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.421 0.579 33 H 0.037 0.963 34 H 0.051 0.949 35 H 0.130 0.870 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.136 0.864 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.048 0.952 45 H 0.104 0.896 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.093 -32.683 4.830 37.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.824 3.176 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.691 4.691 8 H 0.105 0.895 9 S 0.067 5.933 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.449 6.449 13 N -0.359 5.359 14 C -0.002 4.002 15 C 0.015 3.985 16 H 0.143 0.857 17 C -0.176 4.176 18 C -0.017 4.017 19 N -0.377 5.377 20 C 0.361 3.639 21 O -0.474 6.474 22 C -0.186 4.186 23 C -0.137 4.137 24 C -0.167 4.167 25 H 0.106 0.894 26 C -0.128 4.128 27 C -0.163 4.163 28 C -0.116 4.116 29 H 0.080 0.920 30 H 0.137 0.863 31 H 0.130 0.870 32 H 0.260 0.740 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.148 0.852 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.136 0.864 39 H 0.108 0.892 40 H 0.154 0.846 41 H 0.113 0.887 42 H 0.088 0.912 43 H 0.115 0.885 44 H 0.067 0.933 45 H 0.123 0.877 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.417 -32.782 4.332 36.073 hybrid contribution 1.081 1.825 -0.595 2.203 sum 15.498 -30.957 3.737 34.821 Atomic orbital electron populations 1.70207 1.08102 1.28555 1.48121 1.26200 0.95998 1.03526 0.93752 0.84853 0.78676 0.76060 0.78010 1.17721 1.20108 1.19881 1.23240 0.95427 0.91685 1.58710 0.89550 1.85722 1.10915 0.99623 1.97076 1.23338 1.03445 0.93488 1.07259 1.20238 0.86151 0.86950 0.74942 1.90714 1.17926 1.86189 1.50116 1.45469 1.10488 1.04235 1.75715 1.21357 0.97037 0.80886 1.00876 1.23166 0.94840 0.80907 0.99633 0.85735 1.23546 1.04540 0.96458 0.93028 1.23331 0.92741 0.98279 0.87352 1.49767 1.37350 1.09650 1.40945 1.19664 0.78503 0.88421 0.77358 1.90731 1.42920 1.72487 1.41253 1.22392 1.11293 0.88205 0.96697 1.23179 0.95329 1.00079 0.95135 1.23473 0.92586 0.99414 1.01187 0.89372 1.22007 1.01455 0.96821 0.92484 1.22718 0.96359 0.99871 0.97358 1.22067 0.99039 0.99783 0.90710 0.92030 0.86329 0.86969 0.74050 0.94450 0.93028 0.85182 0.89423 0.88097 0.86399 0.89214 0.84622 0.88666 0.91162 0.88492 0.93302 0.87717 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.20 13.22 21.65 0.29 -56.92 16 2 C 0.01 0.56 5.49 84.86 0.47 1.02 16 3 Si 1.00 43.98 29.55 68.60 2.03 46.01 16 4 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.54 -31.34 9.50 67.95 0.65 -30.69 16 8 H 0.09 4.58 7.80 -2.91 -0.02 4.56 16 9 S -0.16 -9.19 20.57 -56.49 -1.16 -10.35 16 10 C -0.12 -5.01 6.16 71.24 0.44 -4.57 16 11 C 0.53 21.01 7.85 87.66 0.69 21.70 16 12 O -0.57 -29.28 15.86 -3.05 -0.05 -29.32 16 13 N -0.70 -19.03 5.55 -463.06 -2.57 -21.60 16 14 C 0.12 3.48 5.41 86.38 0.47 3.95 16 15 C 0.12 1.93 4.09 41.79 0.17 2.10 16 16 H 0.13 1.45 8.14 -2.38 -0.02 1.44 16 17 C -0.14 -1.15 8.00 30.84 0.25 -0.90 16 18 C 0.10 0.69 7.78 83.10 0.65 1.34 16 19 N -0.64 -11.48 3.52 -834.15 -2.94 -14.42 16 20 C 0.57 14.25 7.60 87.66 0.67 14.91 16 21 O -0.59 -21.81 16.16 -3.04 -0.05 -21.86 16 22 C -0.18 -3.04 2.61 -52.20 -0.14 -3.18 16 23 C -0.10 -1.29 9.87 30.60 0.30 -0.98 16 24 C -0.15 -2.53 6.55 -10.07 -0.07 -2.60 16 25 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 26 C -0.09 -1.01 6.62 31.67 0.21 -0.80 16 27 C -0.13 -1.33 6.91 31.89 0.22 -1.11 16 28 C -0.08 -0.77 5.65 31.67 0.18 -0.59 16 29 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 30 H 0.12 4.13 8.14 -2.40 -0.02 4.11 16 31 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 32 H 0.42 7.27 8.48 -92.71 -0.79 6.48 16 33 H 0.04 1.40 7.02 -2.39 -0.02 1.39 16 34 H 0.05 1.66 7.88 -2.39 -0.02 1.64 16 35 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.09 1.01 7.94 -2.39 -0.02 0.99 16 37 H 0.10 0.40 5.80 -2.39 -0.01 0.38 16 38 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 40 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.10 0.58 8.14 -2.39 -0.02 0.57 16 44 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.07 0.74 5.66 -2.39 -0.01 0.72 16 Total: -1.00 -92.95 390.58 0.90 -92.05 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.21 Total: 16.81 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 5.14 Total: -0.42 kcal Atomic # 7 Polarization: -87.71 SS G_CDS: -5.22 Total: -92.93 kcal Atomic # 8 Polarization: -51.09 SS G_CDS: -0.10 Total: -51.18 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -9.19 SS G_CDS: -1.16 Total: -10.35 kcal Total: -92.95 0.90 -92.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505617708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.170 kcal (2) G-P(sol) polarization free energy of solvation -92.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds