Wall clock time and date at job start Tue Mar 31 2020 20:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99876 * 2 1 4 4 H 1.48502 * 109.47020 * 240.00039 * 3 2 1 5 5 H 1.48494 * 109.47198 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47062 * 120.00133 * 3 2 1 7 7 C 1.38813 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99806 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00041 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99784 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46687 * 179.97438 * 10 9 7 12 12 O 1.42898 * 109.46123 * 65.02890 * 11 10 9 13 13 C 1.53032 * 109.46007 * 305.06783 * 11 10 9 14 14 C 1.53197 * 109.31075 * 178.61637 * 13 11 10 15 15 N 1.46930 * 108.77668 * 54.63447 * 14 13 11 16 16 C 1.34771 * 120.62974 * 126.41076 * 15 14 13 17 17 O 1.21279 * 119.99891 * 179.97438 * 16 15 14 18 18 C 1.50703 * 120.00331 * 359.97438 * 16 15 14 19 19 C 1.52998 * 109.47291 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.47068 * 179.97438 * 19 18 16 21 21 C 1.33398 * 125.19973 * 90.00263 * 20 19 18 22 22 C 1.38421 * 114.91946 * 179.97438 * 21 20 19 23 23 C 1.33387 * 114.92231 * 0.02562 * 22 21 20 24 24 S 1.75884 * 125.20452 * 269.69451 * 20 19 18 25 25 C 1.46927 * 118.73677 * 306.39359 * 15 14 13 26 26 C 1.53042 * 109.45627 * 184.99631 * 11 10 9 27 27 H 0.96998 * 120.00449 * 359.97438 * 1 2 3 28 28 H 0.97004 * 119.99664 * 359.97438 * 9 7 2 29 29 H 1.08992 * 109.47311 * 59.99945 * 10 9 7 30 30 H 1.08997 * 109.46828 * 299.99589 * 10 9 7 31 31 H 0.96702 * 113.99989 * 299.99758 * 12 11 10 32 32 H 1.09002 * 109.49818 * 298.56292 * 13 11 10 33 33 H 1.08994 * 109.50136 * 58.66386 * 13 11 10 34 34 H 1.08996 * 109.58455 * 294.84405 * 14 13 11 35 35 H 1.09010 * 109.58494 * 174.42078 * 14 13 11 36 36 H 1.09002 * 109.46996 * 299.99892 * 18 16 15 37 37 H 1.09002 * 109.47029 * 59.99624 * 18 16 15 38 38 H 1.09002 * 109.47234 * 300.00017 * 19 18 16 39 39 H 1.09002 * 109.47169 * 59.99981 * 19 18 16 40 40 H 1.08002 * 122.53884 * 359.95587 * 21 20 19 41 41 H 1.08000 * 122.53867 * 180.02562 * 22 21 20 42 42 H 1.07999 * 125.20530 * 180.02562 * 23 22 21 43 43 H 1.08997 * 109.58457 * 293.82057 * 25 15 14 44 44 H 1.09000 * 109.70357 * 173.46438 * 25 15 14 45 45 H 1.08996 * 109.49952 * 301.33712 * 26 11 10 46 46 H 1.09008 * 109.49643 * 61.43586 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0638 -4.8197 -0.0031 12 8 0.3216 -4.8111 -1.2242 13 6 0.1028 -4.6693 1.1783 14 6 -0.9125 -5.8162 1.1547 15 7 -0.1842 -7.0921 1.1279 16 6 -0.4414 -8.0489 2.0415 17 8 0.1662 -9.0980 2.0084 18 6 -1.4841 -7.8153 3.1043 19 6 -1.5790 -9.0481 4.0053 20 6 -2.6212 -8.8142 5.0685 21 6 -3.9159 -9.1152 4.9555 22 6 -4.6848 -8.8091 6.0651 23 6 -4.0147 -8.2590 7.0788 24 16 -2.3152 -8.1097 6.6507 25 6 0.8294 -7.3050 0.0858 26 6 1.8252 -6.1415 0.1214 27 1 -0.4851 0.8400 0.0004 28 1 0.3555 -2.3881 -0.0016 29 1 2.6847 -3.7153 0.8871 30 1 2.6847 -3.7137 -0.8928 31 1 -0.1863 -4.0013 -1.3701 32 1 0.6656 -4.7008 2.1113 33 1 -0.4220 -3.7171 1.1015 34 1 -1.5370 -5.7331 0.2653 35 1 -1.5364 -5.7703 2.0474 36 1 -1.2049 -6.9480 3.7027 37 1 -2.4500 -7.6353 2.6323 38 1 -1.8584 -9.9151 3.4067 39 1 -0.6132 -9.2285 4.4773 40 1 -4.3326 -9.5635 4.0657 41 1 -5.7468 -9.0010 6.1068 42 1 -4.4484 -7.9565 8.0205 43 1 0.3470 -7.3434 -0.8908 44 1 1.3553 -8.2418 0.2706 45 1 2.5261 -6.2370 -0.7078 46 1 2.3718 -6.1590 1.0643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570424607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:53 Heat of formation + Delta-G solvation = -47.025097 kcal Electronic energy + Delta-G solvation = -26946.894453 eV Core-core repulsion = 23156.124289 eV Total energy + Delta-G solvation = -3790.770165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.40779 -38.68878 -38.06138 -35.53841 -34.07924 -33.98296 -32.01125 -31.25626 -30.33068 -29.04644 -26.79319 -25.31705 -23.80846 -23.35359 -22.76975 -21.63664 -20.19355 -19.49754 -18.89494 -17.77931 -17.49370 -16.75138 -16.08342 -15.92054 -15.69794 -15.43754 -14.97999 -14.42498 -14.32314 -14.14133 -13.95466 -13.41349 -13.37841 -13.24602 -12.98584 -12.87123 -12.67627 -12.51789 -12.33017 -12.25966 -12.03132 -11.88703 -11.53009 -11.30586 -11.09494 -11.07480 -11.01870 -10.91393 -10.84979 -10.34328 -10.19106 -9.84771 -9.69765 -9.44372 -8.97436 -8.90369 -8.73212 -8.56638 -7.04534 -5.86923 -3.15968 0.72644 1.37716 1.75604 2.46953 2.58012 2.99099 3.39025 3.43861 3.44435 4.26449 4.50272 4.52950 4.69834 4.73199 4.77982 4.83722 4.90347 5.00532 5.12520 5.18649 5.20101 5.28374 5.36043 5.41089 5.48205 5.54421 5.58137 5.63041 5.79937 5.80673 5.86647 5.89431 5.96479 6.01404 6.03273 6.10113 6.23354 6.32729 6.36411 6.55618 6.66504 6.67855 7.39781 7.61913 8.04815 8.12288 8.32023 9.42975 9.96383 10.30734 11.35797 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.002446 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.279872 B =11445.692858 C =12963.709646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.128 3.872 11 C 0.130 3.870 12 O -0.561 6.561 13 C -0.158 4.158 14 C 0.110 3.890 15 N -0.606 5.606 16 C 0.515 3.485 17 O -0.550 6.550 18 C -0.136 4.136 19 C -0.033 4.033 20 C -0.170 4.170 21 C -0.142 4.142 22 C -0.133 4.133 23 C -0.218 4.218 24 S 0.098 5.902 25 C 0.118 3.882 26 C -0.117 4.117 27 H 0.257 0.743 28 H 0.381 0.619 29 H 0.025 0.975 30 H 0.029 0.971 31 H 0.382 0.618 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.162 0.838 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.126 -18.558 9.740 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.000 4.000 11 C 0.089 3.911 12 O -0.368 6.368 13 C -0.196 4.196 14 C -0.012 4.012 15 N -0.339 5.339 16 C 0.303 3.697 17 O -0.429 6.429 18 C -0.176 4.176 19 C -0.072 4.072 20 C -0.288 4.288 21 C -0.172 4.172 22 C -0.164 4.164 23 C -0.353 4.353 24 S 0.362 5.638 25 C -0.004 4.004 26 C -0.155 4.155 27 H 0.066 0.934 28 H 0.216 0.784 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.231 0.769 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.180 0.820 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.100 0.900 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.139 -19.017 10.417 22.535 hybrid contribution -1.420 1.337 -0.538 2.024 sum -7.559 -17.679 9.879 21.617 Atomic orbital electron populations 1.69614 1.05086 1.25979 1.57627 1.24724 0.95561 0.97723 1.02730 0.86246 0.78546 0.83363 0.77899 1.21213 1.21636 1.21252 1.19161 0.91067 0.84010 1.43018 0.91213 1.42323 1.05549 0.99992 1.89724 1.21327 0.93923 0.86009 0.98736 1.21284 0.91150 0.94830 0.83818 1.86372 1.65781 1.44447 1.40240 1.22541 0.98416 0.98877 0.99779 1.21783 0.94448 0.82285 1.02725 1.48158 1.39390 1.16200 1.30110 1.20573 0.83729 0.83372 0.81986 1.90674 1.51855 1.26181 1.74182 1.21719 0.99340 1.00103 0.96462 1.19872 0.96502 0.97831 0.93041 1.24561 0.98495 1.06752 0.98969 1.20161 0.92578 1.04155 1.00277 1.20176 1.01282 1.01708 0.93224 1.25629 0.96701 1.08889 1.04121 1.84436 1.07991 1.61553 1.09851 1.21510 0.89509 0.98717 0.90688 1.21848 0.97660 0.93028 1.02985 0.93355 0.78444 0.95677 0.95291 0.76864 0.90793 0.88899 0.90549 0.89988 0.88560 0.88494 0.89146 0.89928 0.84270 0.84373 0.82009 0.90691 0.89402 0.90009 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.82 13.06 55.49 0.72 -26.10 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.10 5.07 -59.91 -0.30 -17.40 16 10 C 0.13 2.45 5.43 -4.04 -0.02 2.43 16 11 C 0.13 1.99 0.71 -90.58 -0.06 1.93 16 12 O -0.56 -8.85 11.70 -35.23 -0.41 -9.27 16 13 C -0.16 -2.23 4.88 -26.61 -0.13 -2.36 16 14 C 0.11 1.28 6.10 -3.71 -0.02 1.26 16 15 N -0.61 -7.57 2.97 -172.76 -0.51 -8.08 16 16 C 0.51 6.54 7.70 -10.99 -0.08 6.45 16 17 O -0.55 -8.62 15.40 5.56 0.09 -8.54 16 18 C -0.14 -1.30 4.03 -27.88 -0.11 -1.41 16 19 C -0.03 -0.31 5.00 -27.88 -0.14 -0.45 16 20 C -0.17 -1.56 5.76 -36.00 -0.21 -1.77 16 21 C -0.14 -1.20 10.05 -41.21 -0.41 -1.61 16 22 C -0.13 -1.05 10.18 -41.21 -0.42 -1.47 16 23 C -0.22 -1.73 11.23 29.04 0.33 -1.40 16 24 S 0.10 0.87 23.33 -107.50 -2.51 -1.63 16 25 C 0.12 1.53 6.19 -3.71 -0.02 1.51 16 26 C -0.12 -1.57 5.11 -26.61 -0.14 -1.71 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 28 H 0.38 9.02 5.55 -40.82 -0.23 8.79 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.38 6.00 8.19 45.56 0.37 6.37 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.48 6.53 -51.93 -0.34 1.14 16 34 H 0.08 0.89 7.81 -51.93 -0.41 0.48 16 35 H 0.08 0.79 5.93 -51.92 -0.31 0.48 16 36 H 0.10 0.87 7.69 -51.93 -0.40 0.47 16 37 H 0.10 0.80 7.94 -51.93 -0.41 0.38 16 38 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 40 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 41 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 43 H 0.07 1.00 7.81 -51.93 -0.41 0.59 16 44 H 0.09 1.17 7.01 -51.93 -0.36 0.81 16 45 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -31.09 381.95 -10.15 -41.24 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -6.26 Total: 12.88 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.70 Total: -5.65 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.09 Total: -51.58 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.33 Total: -17.80 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.51 Total: -1.63 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.09 -10.15 -41.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570424607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.790 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds