Wall clock time and date at job start Tue Mar 31 2020 20:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99876 * 2 1 4 4 H 1.48502 * 109.47020 * 240.00039 * 3 2 1 5 5 H 1.48494 * 109.47198 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47062 * 120.00133 * 3 2 1 7 7 C 1.38813 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99806 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00041 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99784 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46687 * 179.97438 * 10 9 7 12 12 O 1.42898 * 109.46123 * 65.02890 * 11 10 9 13 13 C 1.53032 * 109.46007 * 305.06783 * 11 10 9 14 14 C 1.53197 * 109.31075 * 178.61637 * 13 11 10 15 15 N 1.46930 * 108.77668 * 54.63447 * 14 13 11 16 16 C 1.34771 * 120.62974 * 126.41076 * 15 14 13 17 17 O 1.21279 * 119.99891 * 179.97438 * 16 15 14 18 18 C 1.50703 * 120.00331 * 359.97438 * 16 15 14 19 19 C 1.52998 * 109.47291 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.47068 * 179.97438 * 19 18 16 21 21 C 1.33398 * 125.19973 * 90.00263 * 20 19 18 22 22 C 1.38421 * 114.91946 * 179.97438 * 21 20 19 23 23 C 1.33387 * 114.92231 * 0.02562 * 22 21 20 24 24 S 1.75884 * 125.20452 * 269.69451 * 20 19 18 25 25 C 1.46927 * 118.73677 * 306.39359 * 15 14 13 26 26 C 1.53042 * 109.45627 * 184.99631 * 11 10 9 27 27 H 0.96998 * 120.00449 * 359.97438 * 1 2 3 28 28 H 0.97004 * 119.99664 * 359.97438 * 9 7 2 29 29 H 1.08992 * 109.47311 * 59.99945 * 10 9 7 30 30 H 1.08997 * 109.46828 * 299.99589 * 10 9 7 31 31 H 0.96702 * 113.99989 * 299.99758 * 12 11 10 32 32 H 1.09002 * 109.49818 * 298.56292 * 13 11 10 33 33 H 1.08994 * 109.50136 * 58.66386 * 13 11 10 34 34 H 1.08996 * 109.58455 * 294.84405 * 14 13 11 35 35 H 1.09010 * 109.58494 * 174.42078 * 14 13 11 36 36 H 1.09002 * 109.46996 * 299.99892 * 18 16 15 37 37 H 1.09002 * 109.47029 * 59.99624 * 18 16 15 38 38 H 1.09002 * 109.47234 * 300.00017 * 19 18 16 39 39 H 1.09002 * 109.47169 * 59.99981 * 19 18 16 40 40 H 1.08002 * 122.53884 * 359.95587 * 21 20 19 41 41 H 1.08000 * 122.53867 * 180.02562 * 22 21 20 42 42 H 1.07999 * 125.20530 * 180.02562 * 23 22 21 43 43 H 1.08997 * 109.58457 * 293.82057 * 25 15 14 44 44 H 1.09000 * 109.70357 * 173.46438 * 25 15 14 45 45 H 1.08996 * 109.49952 * 301.33712 * 26 11 10 46 46 H 1.09008 * 109.49643 * 61.43586 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0638 -4.8197 -0.0031 12 8 0.3216 -4.8111 -1.2242 13 6 0.1028 -4.6693 1.1783 14 6 -0.9125 -5.8162 1.1547 15 7 -0.1842 -7.0921 1.1279 16 6 -0.4414 -8.0489 2.0415 17 8 0.1662 -9.0980 2.0084 18 6 -1.4841 -7.8153 3.1043 19 6 -1.5790 -9.0481 4.0053 20 6 -2.6212 -8.8142 5.0685 21 6 -3.9159 -9.1152 4.9555 22 6 -4.6848 -8.8091 6.0651 23 6 -4.0147 -8.2590 7.0788 24 16 -2.3152 -8.1097 6.6507 25 6 0.8294 -7.3050 0.0858 26 6 1.8252 -6.1415 0.1214 27 1 -0.4851 0.8400 0.0004 28 1 0.3555 -2.3881 -0.0016 29 1 2.6847 -3.7153 0.8871 30 1 2.6847 -3.7137 -0.8928 31 1 -0.1863 -4.0013 -1.3701 32 1 0.6656 -4.7008 2.1113 33 1 -0.4220 -3.7171 1.1015 34 1 -1.5370 -5.7331 0.2653 35 1 -1.5364 -5.7703 2.0474 36 1 -1.2049 -6.9480 3.7027 37 1 -2.4500 -7.6353 2.6323 38 1 -1.8584 -9.9151 3.4067 39 1 -0.6132 -9.2285 4.4773 40 1 -4.3326 -9.5635 4.0657 41 1 -5.7468 -9.0010 6.1068 42 1 -4.4484 -7.9565 8.0205 43 1 0.3470 -7.3434 -0.8908 44 1 1.3553 -8.2418 0.2706 45 1 2.5261 -6.2370 -0.7078 46 1 2.3718 -6.1590 1.0643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570424607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:52 Heat of formation + Delta-G solvation = -66.388108 kcal Electronic energy + Delta-G solvation = -26947.734097 eV Core-core repulsion = 23156.124289 eV Total energy + Delta-G solvation = -3791.609808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.47789 -39.83609 -38.75276 -36.80386 -35.78411 -34.77440 -33.48081 -32.54442 -31.77413 -29.83018 -28.21358 -26.30009 -25.27130 -24.46556 -23.72295 -22.87288 -21.38195 -20.11175 -19.94109 -19.44437 -18.57773 -17.58557 -17.29610 -16.91434 -16.71560 -16.66376 -16.25882 -15.82970 -15.68505 -15.21203 -15.01619 -14.90961 -14.47701 -14.38722 -14.06830 -14.00210 -13.62225 -13.55310 -13.26683 -13.09367 -13.05215 -12.95742 -12.85760 -12.75230 -12.61299 -12.29886 -12.20666 -12.10529 -12.00548 -11.96256 -11.57026 -11.30509 -10.96679 -10.93385 -10.69129 -9.64537 -9.54594 -9.38604 -9.02167 -7.96797 -5.24869 0.09771 0.74124 1.13763 1.48465 1.49688 1.55913 1.58965 1.84427 2.03411 2.54957 3.25868 3.39392 3.42401 3.65645 3.74293 3.89762 3.96536 4.01851 4.06177 4.14531 4.24776 4.29747 4.34463 4.43055 4.54753 4.59431 4.67436 4.72623 4.76170 4.77650 4.83577 4.89496 4.89909 4.99446 5.06464 5.08705 5.17760 5.27286 5.33250 5.42386 5.48962 5.52919 5.63398 6.25374 6.40392 6.75320 7.12570 7.33566 8.04088 8.30211 9.25546 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.002446 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.279872 B =11445.692858 C =12963.709646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.066 4.066 3 Si 0.968 3.032 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.249 4.249 8 H 0.069 0.931 9 N -0.736 5.736 10 C 0.128 3.872 11 C 0.138 3.862 12 O -0.562 6.562 13 C -0.151 4.151 14 C 0.117 3.883 15 N -0.606 5.606 16 C 0.513 3.487 17 O -0.583 6.583 18 C -0.129 4.129 19 C -0.026 4.026 20 C -0.183 4.183 21 C -0.142 4.142 22 C -0.141 4.141 23 C -0.217 4.217 24 S 0.072 5.928 25 C 0.122 3.878 26 C -0.111 4.111 27 H 0.253 0.747 28 H 0.378 0.622 29 H 0.025 0.975 30 H 0.020 0.980 31 H 0.382 0.618 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.153 0.847 41 H 0.160 0.840 42 H 0.181 0.819 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.033 -18.983 10.302 23.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.259 4.259 3 Si 0.797 3.203 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.381 5.381 10 C 0.001 3.999 11 C 0.097 3.903 12 O -0.369 6.369 13 C -0.190 4.190 14 C -0.005 4.005 15 N -0.338 5.338 16 C 0.304 3.696 17 O -0.464 6.464 18 C -0.169 4.169 19 C -0.066 4.066 20 C -0.300 4.300 21 C -0.172 4.172 22 C -0.171 4.171 23 C -0.352 4.352 24 S 0.335 5.665 25 C 0.000 4.000 26 C -0.150 4.150 27 H 0.062 0.938 28 H 0.213 0.787 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.231 0.769 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.135 0.865 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.171 0.829 41 H 0.177 0.823 42 H 0.199 0.801 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.029 -19.458 10.977 23.420 hybrid contribution -1.114 1.414 -0.712 1.936 sum -8.143 -18.044 10.265 22.299 Atomic orbital electron populations 1.69743 1.06199 1.26253 1.58999 1.25439 0.96406 1.00643 1.03393 0.85299 0.77331 0.79627 0.77997 1.20740 1.21970 1.20666 1.19499 0.91353 0.85402 1.41857 0.91276 1.42415 1.05596 1.00580 1.89472 1.21447 0.94599 0.85881 0.98002 1.21216 0.90694 0.94091 0.84292 1.86376 1.65668 1.44341 1.40500 1.22426 0.98520 0.99147 0.98878 1.21793 0.93698 0.80725 1.04289 1.48217 1.39242 1.16450 1.29910 1.21087 0.83757 0.82701 0.82101 1.90662 1.53186 1.27525 1.74993 1.21725 0.99121 1.00416 0.95594 1.19747 0.96073 0.97720 0.93039 1.24512 0.98712 1.07887 0.98860 1.20433 0.92361 1.03398 1.00993 1.20462 1.02382 1.01385 0.92856 1.25927 0.95788 1.08502 1.05003 1.84517 1.09494 1.62092 1.10373 1.21415 0.89529 0.98169 0.90914 1.21815 0.97710 0.92052 1.03415 0.93839 0.78748 0.95728 0.96235 0.76900 0.91114 0.90693 0.90067 0.87423 0.87713 0.86498 0.89420 0.91246 0.82897 0.82270 0.80121 0.90773 0.89671 0.89514 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.41 13.06 21.65 0.28 -55.12 16 2 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 3 Si 0.97 44.73 29.55 68.60 2.03 46.76 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.25 -13.39 9.99 84.03 0.84 -12.55 16 8 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 9 N -0.74 -34.54 5.07 -343.46 -1.74 -36.28 16 10 C 0.13 4.87 5.43 86.38 0.47 5.34 16 11 C 0.14 4.13 0.71 -10.77 -0.01 4.12 16 12 O -0.56 -17.28 11.70 -148.98 -1.74 -19.02 16 13 C -0.15 -4.13 4.88 30.67 0.15 -3.98 16 14 C 0.12 2.50 6.10 86.36 0.53 3.03 16 15 N -0.61 -14.18 2.97 -818.89 -2.43 -16.62 16 16 C 0.51 12.33 7.70 87.66 0.67 13.00 16 17 O -0.58 -17.90 15.40 -3.03 -0.05 -17.94 16 18 C -0.13 -2.22 4.03 29.85 0.12 -2.10 16 19 C -0.03 -0.47 5.00 29.85 0.15 -0.32 16 20 C -0.18 -3.10 5.76 24.59 0.14 -2.95 16 21 C -0.14 -2.10 10.05 21.22 0.21 -1.89 16 22 C -0.14 -1.89 10.18 21.22 0.22 -1.67 16 23 C -0.22 -3.02 11.23 66.72 0.75 -2.28 16 24 S 0.07 1.22 23.33 -56.49 -1.32 -0.10 16 25 C 0.12 3.03 6.19 86.36 0.53 3.57 16 26 C -0.11 -2.88 5.11 30.67 0.16 -2.73 16 27 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.38 18.05 5.55 -92.71 -0.51 17.53 16 29 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.38 11.87 8.19 -74.06 -0.61 11.26 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 2.36 6.53 -2.39 -0.02 2.35 16 34 H 0.08 1.71 7.81 -2.39 -0.02 1.69 16 35 H 0.11 1.77 5.93 -2.38 -0.01 1.76 16 36 H 0.10 1.67 7.69 -2.39 -0.02 1.66 16 37 H 0.12 1.58 7.94 -2.39 -0.02 1.56 16 38 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 39 H 0.07 1.42 8.10 -2.39 -0.02 1.40 16 40 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 41 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 42 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 43 H 0.07 1.87 7.81 -2.39 -0.02 1.85 16 44 H 0.08 2.20 7.01 -2.39 -0.02 2.18 16 45 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -65.41 381.95 0.31 -65.10 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: -0.12 Total: 37.79 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 5.40 Total: -4.56 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -3.89 Total: -108.02 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -1.79 Total: -36.96 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -1.32 Total: -0.10 kcal Total: -65.41 0.31 -65.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570424607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.288 kcal (2) G-P(sol) polarization free energy of solvation -65.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds