Wall clock time and date at job start Tue Mar 31 2020 20:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 119.99704 * 2 1 4 4 H 1.48506 * 109.47305 * 270.00256 * 3 2 1 5 5 H 1.48498 * 109.47002 * 30.00273 * 3 2 1 6 6 H 1.48494 * 109.47018 * 150.00419 * 3 2 1 7 7 C 1.38795 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00024 * 359.71547 * 7 2 1 9 9 S 1.76197 * 120.00032 * 179.97438 * 7 2 1 10 10 C 1.81003 * 100.00099 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47106 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99846 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99882 * 180.02562 * 11 10 9 14 14 C 1.46963 * 120.59592 * 359.72256 * 13 11 10 15 15 C 1.53806 * 108.40233 * 124.75536 * 14 13 11 16 16 N 1.46965 * 108.57718 * 49.64004 * 15 14 13 17 17 C 1.34776 * 120.59507 * 124.67008 * 16 15 14 18 18 O 1.21284 * 119.99948 * 174.75742 * 17 16 15 19 19 C 1.50697 * 120.00104 * 354.75696 * 17 16 15 20 20 H 1.09003 * 109.63761 * 325.00707 * 19 17 16 21 21 C 1.53019 * 109.64221 * 85.42690 * 19 17 16 22 22 C 1.50166 * 110.09509 * 168.90123 * 21 19 17 23 23 C 1.29446 * 124.14915 * 343.29384 * 22 21 19 24 24 C 1.50069 * 124.07215 * 0.23013 * 23 22 21 25 25 C 1.53020 * 110.14988 * 342.87149 * 24 23 22 26 26 C 1.46967 * 118.80907 * 304.64264 * 16 15 14 27 27 C 1.46962 * 120.59298 * 179.97438 * 13 11 10 28 28 H 0.96997 * 120.00199 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47240 * 300.00178 * 10 9 7 30 30 H 1.09006 * 109.46984 * 60.00095 * 10 9 7 31 31 H 1.08997 * 109.60921 * 244.54121 * 14 13 11 32 32 H 1.09005 * 109.60764 * 5.04743 * 14 13 11 33 33 H 1.09001 * 109.74805 * 289.85277 * 15 14 13 34 34 H 1.08997 * 109.67975 * 169.38431 * 15 14 13 35 35 H 1.08996 * 109.36026 * 289.33063 * 21 19 17 36 36 H 1.09000 * 109.35775 * 48.91649 * 21 19 17 37 37 H 1.08001 * 117.89241 * 163.02747 * 22 21 19 38 38 H 1.08000 * 117.96634 * 180.21385 * 23 22 21 39 39 H 1.09007 * 109.35717 * 222.66888 * 24 23 22 40 40 H 1.09000 * 109.24909 * 103.01353 * 24 23 22 41 41 H 1.09006 * 109.64728 * 289.75497 * 25 24 23 42 42 H 1.08998 * 109.81839 * 169.22054 * 25 24 23 43 43 H 1.08994 * 109.61519 * 295.48237 * 26 16 15 44 44 H 1.09007 * 109.74755 * 175.05251 * 26 16 15 45 45 H 1.08999 * 109.61341 * 354.95801 * 27 13 11 46 46 H 1.09008 * 109.60315 * 115.45998 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1373 0.0037 9 16 3.7723 -1.2019 -0.0012 10 6 4.0867 -2.9844 -0.0009 11 6 5.5732 -3.2324 -0.0021 12 8 6.3440 -2.2961 -0.0025 13 7 6.0458 -4.4945 -0.0026 14 6 5.1235 -5.6387 0.0040 15 6 5.4601 -6.5407 -1.1954 16 7 6.9072 -6.7975 -1.1965 17 6 7.3798 -8.0597 -1.1970 18 8 8.5720 -8.2608 -1.2939 19 6 6.4271 -9.2211 -1.0772 20 1 5.5988 -8.9495 -0.4229 21 6 5.8895 -9.5903 -2.4615 22 6 5.1593 -10.9009 -2.3987 23 6 5.2695 -11.7483 -1.4264 24 6 6.1395 -11.5374 -0.2219 25 6 7.1645 -10.4354 -0.4985 26 6 7.8296 -5.6534 -1.1976 27 6 7.4928 -4.7513 -0.0043 28 1 -0.4850 0.8400 0.0004 29 1 3.6441 -3.4313 0.8892 30 1 3.6434 -3.4317 -0.8907 31 1 5.2424 -6.1990 0.9313 32 1 4.0971 -5.2816 -0.0814 33 1 5.1764 -6.0421 -2.1223 34 1 4.9213 -7.4841 -1.1078 35 1 5.2102 -8.8102 -2.8051 36 1 6.7210 -9.6763 -3.1609 37 1 4.4972 -11.1500 -3.2148 38 1 4.6998 -12.6639 -1.4854 39 1 6.6612 -12.4650 0.0139 40 1 5.5171 -11.2477 0.6247 41 1 7.9020 -10.7928 -1.2172 42 1 7.6632 -10.1534 0.4287 43 1 7.7145 -5.0916 -2.1245 44 1 8.8565 -6.0081 -1.1099 45 1 8.0317 -3.8082 -0.0952 46 1 7.7769 -5.2498 0.9225 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686355346.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:14 Heat of formation + Delta-G solvation = -52.288048 kcal Electronic energy + Delta-G solvation = -27033.419956 eV Core-core repulsion = 23242.421572 eV Total energy + Delta-G solvation = -3790.998384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.00606 -39.68499 -38.11141 -36.97939 -34.19294 -32.54781 -32.48361 -31.37186 -31.08554 -29.58544 -27.61024 -25.67014 -24.61942 -24.08835 -23.35021 -22.23681 -20.26098 -18.83257 -18.38881 -17.88773 -17.29069 -16.83579 -16.42807 -16.04778 -15.80378 -15.63933 -15.37415 -15.00398 -14.62448 -14.24458 -14.01754 -13.85959 -13.79505 -13.71621 -13.47814 -13.13598 -12.84804 -12.80605 -12.65820 -12.58966 -12.12605 -11.90457 -11.83921 -11.62393 -11.35615 -11.29048 -11.15670 -11.04728 -10.81303 -10.64588 -9.93167 -9.90307 -9.60716 -9.44894 -9.39923 -9.04594 -8.55087 -8.51464 -6.97760 -6.33485 -4.05853 1.87636 2.28077 2.41812 2.73487 2.82495 3.12832 3.29831 3.47079 3.52642 3.97455 4.24948 4.28306 4.31300 4.36116 4.46943 4.57352 4.72364 4.77168 4.79414 4.86670 4.87611 4.98643 5.02904 5.05870 5.07280 5.12252 5.19226 5.21310 5.35517 5.43658 5.47104 5.50439 5.52833 5.55848 5.63610 5.71221 5.75885 5.88126 5.88604 6.11843 6.22022 6.36681 6.52207 7.00590 7.31486 7.83221 7.89399 8.31166 8.36237 9.12728 10.75637 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019599 B = 0.002392 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.311949 B =11701.944464 C =12737.708662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.122 4.122 11 C 0.534 3.466 12 O -0.515 6.515 13 N -0.620 5.620 14 C 0.093 3.907 15 C 0.088 3.912 16 N -0.611 5.611 17 C 0.522 3.478 18 O -0.539 6.539 19 C -0.109 4.109 20 H 0.097 0.903 21 C -0.080 4.080 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.093 4.093 25 C -0.099 4.099 26 C 0.098 3.902 27 C 0.101 3.899 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.238 -23.797 -2.224 26.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.273 4.273 11 C 0.322 3.678 12 O -0.389 6.389 13 N -0.357 5.357 14 C -0.032 4.032 15 C -0.036 4.036 16 N -0.345 5.345 17 C 0.311 3.689 18 O -0.416 6.416 19 C -0.130 4.130 20 H 0.115 0.885 21 C -0.118 4.118 22 C -0.172 4.172 23 C -0.172 4.172 24 C -0.130 4.130 25 C -0.137 4.137 26 C -0.025 4.025 27 C -0.023 4.023 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.850 -22.389 -2.277 25.915 hybrid contribution -1.094 -0.357 -0.071 1.153 sum 11.756 -22.746 -2.349 25.712 Atomic orbital electron populations 1.69932 1.05905 1.27826 1.47940 1.24708 0.94451 0.98977 0.93142 0.86741 0.81898 0.83300 0.79961 1.19188 1.19910 1.15933 1.22289 0.88154 0.97522 1.58939 0.89366 1.84847 1.09401 0.99862 1.97406 1.23312 0.93894 1.04503 1.05583 1.20353 0.90740 0.81705 0.74967 1.90698 1.58732 1.41544 1.47933 1.48021 1.06374 1.05622 1.75639 1.22229 0.95121 0.87625 0.98216 1.22374 0.80686 1.00930 0.99615 1.48097 1.07146 1.05735 1.73513 1.20673 0.89289 0.83550 0.75427 1.90691 1.16734 1.84658 1.49490 1.21439 0.98289 0.93904 0.99358 0.88515 1.20417 0.99945 0.96149 0.95246 1.21983 1.00414 0.95600 0.99230 1.22092 0.99801 0.99289 0.96029 1.20500 0.96716 0.99103 0.96665 1.21436 0.97410 0.93241 1.01651 1.22024 0.95093 0.86496 0.98913 1.21917 0.81681 1.00880 0.97797 0.91895 0.88431 0.88481 0.90707 0.87732 0.90091 0.88188 0.90287 0.90178 0.87438 0.87734 0.90570 0.90612 0.90690 0.91137 0.90802 0.87912 0.87591 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.01 13.97 55.49 0.78 -25.24 16 2 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 3 Si 0.86 21.40 27.74 -169.99 -4.71 16.68 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 7 C -0.52 -14.56 10.04 30.94 0.31 -14.25 16 8 H 0.09 2.55 8.03 -52.48 -0.42 2.13 16 9 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 10 C -0.12 -2.23 4.50 36.01 0.16 -2.07 16 11 C 0.53 9.07 7.72 -10.99 -0.08 8.99 16 12 O -0.52 -10.70 15.27 5.56 0.08 -10.61 16 13 N -0.62 -7.71 2.94 -172.24 -0.51 -8.22 16 14 C 0.09 0.82 6.54 -3.37 -0.02 0.80 16 15 C 0.09 0.65 6.18 -3.37 -0.02 0.63 16 16 N -0.61 -5.66 2.95 -172.24 -0.51 -6.17 16 17 C 0.52 5.26 6.79 -10.99 -0.07 5.18 16 18 O -0.54 -7.31 15.68 5.55 0.09 -7.23 16 19 C -0.11 -0.79 1.69 -91.56 -0.15 -0.95 16 20 H 0.10 0.57 6.52 -51.93 -0.34 0.24 16 21 C -0.08 -0.53 5.30 -28.13 -0.15 -0.68 16 22 C -0.15 -0.96 9.80 -35.85 -0.35 -1.31 16 23 C -0.15 -0.92 9.80 -35.90 -0.35 -1.28 16 24 C -0.09 -0.54 6.12 -28.18 -0.17 -0.71 16 25 C -0.10 -0.74 4.72 -26.52 -0.13 -0.86 16 26 C 0.10 0.99 6.57 -3.62 -0.02 0.96 16 27 C 0.10 1.12 6.59 -3.62 -0.02 1.10 16 28 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.10 1.64 7.90 -51.92 -0.41 1.23 16 30 H 0.10 1.61 7.73 -51.91 -0.40 1.20 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.89 5.91 -51.93 -0.31 0.58 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.50 4.93 -51.93 -0.26 0.25 16 35 H 0.08 0.45 7.31 -51.93 -0.38 0.07 16 36 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.11 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.10 0.52 8.06 -52.49 -0.42 0.10 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.10 1.07 7.03 -51.92 -0.37 0.71 16 45 H 0.11 1.32 6.99 -51.93 -0.36 0.96 16 46 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -34.75 375.87 -9.33 -44.08 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -7.04 Total: -1.70 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.18 Total: -1.80 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: -0.24 Total: -39.62 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.17 Total: -17.84 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.71 Total: 16.68 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.75 -9.33 -44.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686355346.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.204 kcal (2) G-P(sol) polarization free energy of solvation -34.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds