Wall clock time and date at job start Tue Mar 31 2020 22:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39693 * 125.77203 * 2 1 4 4 C 1.36214 * 107.85858 * 179.97438 * 3 2 1 5 5 N 1.39200 * 126.27218 * 179.97438 * 4 3 2 6 6 C 1.34772 * 119.99664 * 0.02562 * 5 4 3 7 7 O 1.21389 * 120.00102 * 0.02562 * 6 5 4 8 8 C 1.49305 * 119.99941 * 180.02562 * 6 5 4 9 9 O 1.21374 * 119.99722 * 6.75685 * 8 6 5 10 10 N 1.34776 * 120.00202 * 186.75374 * 8 6 5 11 11 C 1.46922 * 120.63287 * 8.45278 * 10 8 6 12 12 C 1.53622 * 108.54526 * 126.36574 * 11 10 8 13 13 C 1.53038 * 109.23930 * 54.85698 * 12 11 10 14 14 C 1.53039 * 109.54330 * 298.51257 * 13 12 11 15 15 H 1.08999 * 109.49424 * 301.41344 * 14 13 12 16 16 F 1.39893 * 109.50189 * 181.31695 * 14 13 12 17 17 C 1.46934 * 120.62759 * 188.73134 * 10 8 6 18 18 N 1.35853 * 107.45498 * 359.97438 * 4 3 2 19 19 C 1.46507 * 126.09690 * 180.02562 * 18 4 3 20 20 C 1.50700 * 109.47412 * 89.99889 * 19 18 4 21 21 H 1.08006 * 119.99537 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00342 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99568 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00112 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46808 * 90.00296 * 24 22 20 26 26 H 1.48500 * 109.47141 * 210.00121 * 24 22 20 27 27 H 1.48498 * 109.47209 * 330.00240 * 24 22 20 28 28 N 1.30851 * 125.76748 * 179.68468 * 2 1 3 29 29 H 1.09004 * 109.46839 * 90.00479 * 1 2 3 30 30 H 1.08990 * 109.47281 * 330.00824 * 1 2 3 31 31 H 1.08998 * 109.47558 * 210.00048 * 1 2 3 32 32 H 1.07996 * 126.06795 * 359.97438 * 3 2 1 33 33 H 0.96996 * 120.00123 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.58799 * 246.20652 * 11 10 8 35 35 H 1.09005 * 109.58347 * 6.62894 * 11 10 8 36 36 H 1.08999 * 109.63362 * 294.87037 * 12 11 10 37 37 H 1.09001 * 109.43237 * 174.72823 * 12 11 10 38 38 H 1.09001 * 109.46163 * 178.48886 * 13 12 11 39 39 H 1.09005 * 109.44825 * 58.52406 * 13 12 11 40 40 H 1.08993 * 109.59074 * 353.37549 * 17 10 8 41 41 H 1.09000 * 109.58046 * 113.80390 * 17 10 8 42 42 H 1.08997 * 109.47141 * 210.00156 * 19 18 4 43 43 H 1.08998 * 109.46993 * 329.99813 * 19 18 4 44 44 H 0.97006 * 119.99921 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3236 1.1334 0.0000 4 6 3.6197 0.7144 0.0006 5 7 4.7485 1.5290 0.0003 6 6 4.6119 2.8698 -0.0002 7 8 3.5045 3.3670 0.0002 8 6 5.8226 3.7435 -0.0011 9 8 6.9255 3.2521 -0.1251 10 7 5.6909 5.0778 0.1358 11 6 4.3891 5.6711 0.4705 12 6 4.5627 6.5633 1.7090 13 6 5.6694 7.5862 1.4425 14 6 6.9900 6.8566 1.1859 15 1 7.2385 6.2397 2.0495 16 9 8.0070 7.7930 0.9721 17 6 6.8451 5.9672 -0.0530 18 7 3.6089 -0.6441 0.0015 19 6 4.7857 -1.5166 0.0029 20 6 5.1883 -1.8149 1.4242 21 1 4.6242 -1.3959 2.2444 22 6 6.2767 -2.6225 1.6774 23 7 6.9638 -3.1322 0.6786 24 14 6.7762 -2.9915 3.4392 25 1 6.0741 -4.2136 3.9070 26 1 8.2438 -3.2090 3.5024 27 1 6.4077 -1.8455 4.3086 28 7 2.2718 -1.0617 0.0058 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 0.8900 0.5137 31 1 -0.3634 -0.8899 0.5138 32 1 1.9870 2.1596 -0.0004 33 1 5.6333 1.1316 0.0004 34 1 4.0341 6.2702 -0.3681 35 1 3.6715 4.8795 0.6864 36 1 4.8341 5.9491 2.5676 37 1 3.6276 7.0842 1.9147 38 1 5.7773 8.2385 2.3090 39 1 5.4088 8.1834 0.5686 40 1 7.7484 5.3712 -0.1826 41 1 6.6862 6.5901 -0.9333 42 1 4.5479 -2.4483 -0.5105 43 1 5.6079 -1.0185 -0.5107 44 1 7.7298 -3.7001 0.8567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516301708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:20 Heat of formation + Delta-G solvation = -26.877262 kcal Electronic energy + Delta-G solvation = -29609.422953 eV Core-core repulsion = 25285.606039 eV Total energy + Delta-G solvation = -4323.816914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.01549 -41.43600 -40.43632 -38.73588 -37.65724 -35.06356 -33.87721 -32.99722 -32.12141 -31.05621 -29.32904 -28.60472 -26.67691 -26.08566 -24.33737 -23.52312 -22.84111 -21.59932 -20.57372 -19.90052 -19.19627 -17.66424 -17.19322 -16.88660 -16.60204 -16.45272 -16.37558 -15.71824 -15.64646 -15.39990 -14.82942 -14.64919 -14.39100 -14.27271 -13.97325 -13.84430 -13.36339 -13.05020 -12.94495 -12.83328 -12.78383 -12.60213 -12.17840 -12.00190 -11.88252 -11.60342 -11.51439 -11.35379 -11.18200 -11.05969 -10.89216 -10.84856 -10.58571 -10.34827 -9.87973 -9.84324 -9.30626 -9.13740 -8.72171 -8.03173 -7.63510 -6.33715 -4.42687 1.08567 1.89845 2.52023 3.00582 3.10705 3.17926 3.24438 3.28238 3.46814 3.63181 4.03019 4.05793 4.19573 4.24788 4.31397 4.45954 4.62649 4.92375 4.99760 5.07131 5.13313 5.24578 5.31966 5.35047 5.45141 5.48953 5.53415 5.64996 5.85321 5.93155 5.95085 6.02238 6.08271 6.13196 6.30260 6.46999 6.74122 6.78774 6.97113 7.22760 7.39266 7.44799 7.58633 7.70354 7.77439 8.00270 8.51038 8.65453 9.25177 10.73716 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010140 B = 0.003474 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.772326 B = 8058.560441 C = 9997.613807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.050 3.950 3 C -0.285 4.285 4 C 0.291 3.709 5 N -0.603 5.603 6 C 0.516 3.484 7 O -0.490 6.490 8 C 0.519 3.481 9 O -0.505 6.505 10 N -0.583 5.583 11 C 0.064 3.936 12 C -0.133 4.133 13 C -0.148 4.148 14 C 0.079 3.921 15 H 0.090 0.910 16 F -0.207 7.207 17 C 0.086 3.914 18 N -0.339 5.339 19 C 0.255 3.745 20 C -0.544 4.544 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.888 5.888 24 Si 0.907 3.093 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.272 1.272 28 N -0.276 5.276 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.164 0.836 33 H 0.429 0.571 34 H 0.074 0.926 35 H 0.148 0.852 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 20.435 -0.729 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.317 4.317 4 C 0.069 3.931 5 N -0.250 5.250 6 C 0.298 3.702 7 O -0.365 6.365 8 C 0.301 3.699 9 O -0.379 6.379 10 N -0.317 5.317 11 C -0.057 4.057 12 C -0.172 4.172 13 C -0.185 4.185 14 C 0.042 3.958 15 H 0.108 0.892 16 F -0.187 7.187 17 C -0.037 4.037 18 N -0.125 5.125 19 C 0.137 3.863 20 C -0.582 4.582 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.525 5.525 24 Si 0.734 3.266 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.197 1.197 28 N -0.101 5.101 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.181 0.819 33 H 0.268 0.732 34 H 0.093 0.907 35 H 0.164 0.836 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.126 0.874 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.656 19.063 -0.861 19.642 hybrid contribution 1.185 0.482 0.913 1.571 sum -3.471 19.545 0.052 19.851 Atomic orbital electron populations 1.20033 0.87390 1.02569 1.02155 1.22027 0.96627 0.90874 1.01985 1.21275 0.88820 1.00561 1.21036 1.17966 0.87431 0.83537 1.04176 1.42314 1.09699 1.04743 1.68212 1.19803 0.89562 0.82385 0.78465 1.90430 1.26426 1.72158 1.47498 1.19785 0.88949 0.82905 0.78305 1.90838 1.26386 1.73473 1.47228 1.47716 1.11243 1.04561 1.68205 1.23110 0.84792 1.00655 0.97108 1.22002 0.99087 0.97384 0.98688 1.22177 0.93933 0.98817 1.03617 1.21884 0.85875 0.88748 0.99292 0.89216 1.92828 1.62045 1.67504 1.96358 1.22225 0.90915 0.93083 0.97481 1.49614 1.06621 1.01907 1.54377 1.19708 0.77696 0.89749 0.99146 1.21307 1.13611 1.32122 0.91170 0.91663 1.24932 0.95575 0.94836 0.98252 1.69913 1.19113 1.32346 1.31135 0.86337 0.77724 0.79016 0.83530 1.20185 1.20780 1.19695 1.77385 0.86077 1.21817 1.24864 0.91276 0.91047 0.91404 0.81921 0.73168 0.90720 0.83574 0.90965 0.89406 0.90316 0.90385 0.87441 0.89613 0.92311 0.93590 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.44 36.01 0.38 -0.48 16 2 C 0.05 0.93 7.20 -82.47 -0.59 0.34 16 3 C -0.29 -5.35 9.58 -39.77 -0.38 -5.73 16 4 C 0.29 5.90 7.68 -152.86 -1.17 4.72 16 5 N -0.60 -10.70 5.40 -11.80 -0.06 -10.77 16 6 C 0.52 7.88 7.70 -11.66 -0.09 7.79 16 7 O -0.49 -7.28 10.30 5.46 0.06 -7.23 16 8 C 0.52 7.22 7.73 -11.65 -0.09 7.13 16 9 O -0.51 -8.27 15.93 5.48 0.09 -8.18 16 10 N -0.58 -6.27 2.97 -173.06 -0.51 -6.78 16 11 C 0.06 0.56 6.01 -3.49 -0.02 0.54 16 12 C -0.13 -0.91 6.10 -26.39 -0.16 -1.07 16 13 C -0.15 -0.98 5.62 -26.69 -0.15 -1.13 16 14 C 0.08 0.67 4.03 -26.61 -0.11 0.56 16 15 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 16 F -0.21 -2.08 17.09 2.25 0.04 -2.04 16 17 C 0.09 0.80 6.18 -3.71 -0.02 0.78 16 18 N -0.34 -7.78 3.62 -61.47 -0.22 -8.00 16 19 C 0.25 6.36 6.02 -5.19 -0.03 6.33 16 20 C -0.54 -14.65 9.39 -34.44 -0.32 -14.97 16 21 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 22 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 23 N -0.89 -24.58 13.29 55.43 0.74 -23.84 16 24 Si 0.91 20.91 29.54 -169.99 -5.02 15.89 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 N -0.28 -6.18 12.56 33.64 0.42 -5.76 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.16 2.79 5.83 -52.49 -0.31 2.48 16 33 H 0.43 7.77 7.48 -40.82 -0.31 7.46 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.15 1.54 4.30 -54.85 -0.24 1.30 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.11 1.14 7.01 -51.93 -0.36 0.78 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 43 H 0.05 1.13 7.52 -51.93 -0.39 0.74 16 44 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -30.49 368.95 -7.58 -38.07 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.80 Total: 6.54 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -2.87 Total: 6.53 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.36 Total: -55.15 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.14 Total: -15.41 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.49 -7.58 -38.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516301708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.194 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds