Wall clock time and date at job start Tue Mar 31 2020 22:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39693 * 125.77203 * 2 1 4 4 C 1.36214 * 107.85858 * 179.97438 * 3 2 1 5 5 N 1.39200 * 126.27218 * 179.97438 * 4 3 2 6 6 C 1.34772 * 119.99664 * 0.02562 * 5 4 3 7 7 O 1.21389 * 120.00102 * 0.02562 * 6 5 4 8 8 C 1.49305 * 119.99941 * 180.02562 * 6 5 4 9 9 O 1.21374 * 119.99722 * 6.75685 * 8 6 5 10 10 N 1.34776 * 120.00202 * 186.75374 * 8 6 5 11 11 C 1.46922 * 120.63287 * 8.45278 * 10 8 6 12 12 C 1.53622 * 108.54526 * 126.36574 * 11 10 8 13 13 C 1.53038 * 109.23930 * 54.85698 * 12 11 10 14 14 C 1.53039 * 109.54330 * 298.51257 * 13 12 11 15 15 H 1.08999 * 109.49424 * 301.41344 * 14 13 12 16 16 F 1.39893 * 109.50189 * 181.31695 * 14 13 12 17 17 C 1.46934 * 120.62759 * 188.73134 * 10 8 6 18 18 N 1.35853 * 107.45498 * 359.97438 * 4 3 2 19 19 C 1.46507 * 126.09690 * 180.02562 * 18 4 3 20 20 C 1.50700 * 109.47412 * 89.99889 * 19 18 4 21 21 H 1.08006 * 119.99537 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00342 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99568 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00112 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46808 * 90.00296 * 24 22 20 26 26 H 1.48500 * 109.47141 * 210.00121 * 24 22 20 27 27 H 1.48498 * 109.47209 * 330.00240 * 24 22 20 28 28 N 1.30851 * 125.76748 * 179.68468 * 2 1 3 29 29 H 1.09004 * 109.46839 * 90.00479 * 1 2 3 30 30 H 1.08990 * 109.47281 * 330.00824 * 1 2 3 31 31 H 1.08998 * 109.47558 * 210.00048 * 1 2 3 32 32 H 1.07996 * 126.06795 * 359.97438 * 3 2 1 33 33 H 0.96996 * 120.00123 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.58799 * 246.20652 * 11 10 8 35 35 H 1.09005 * 109.58347 * 6.62894 * 11 10 8 36 36 H 1.08999 * 109.63362 * 294.87037 * 12 11 10 37 37 H 1.09001 * 109.43237 * 174.72823 * 12 11 10 38 38 H 1.09001 * 109.46163 * 178.48886 * 13 12 11 39 39 H 1.09005 * 109.44825 * 58.52406 * 13 12 11 40 40 H 1.08993 * 109.59074 * 353.37549 * 17 10 8 41 41 H 1.09000 * 109.58046 * 113.80390 * 17 10 8 42 42 H 1.08997 * 109.47141 * 210.00156 * 19 18 4 43 43 H 1.08998 * 109.46993 * 329.99813 * 19 18 4 44 44 H 0.97006 * 119.99921 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3236 1.1334 0.0000 4 6 3.6197 0.7144 0.0006 5 7 4.7485 1.5290 0.0003 6 6 4.6119 2.8698 -0.0002 7 8 3.5045 3.3670 0.0002 8 6 5.8226 3.7435 -0.0011 9 8 6.9255 3.2521 -0.1251 10 7 5.6909 5.0778 0.1358 11 6 4.3891 5.6711 0.4705 12 6 4.5627 6.5633 1.7090 13 6 5.6694 7.5862 1.4425 14 6 6.9900 6.8566 1.1859 15 1 7.2385 6.2397 2.0495 16 9 8.0070 7.7930 0.9721 17 6 6.8451 5.9672 -0.0530 18 7 3.6089 -0.6441 0.0015 19 6 4.7857 -1.5166 0.0029 20 6 5.1883 -1.8149 1.4242 21 1 4.6242 -1.3959 2.2444 22 6 6.2767 -2.6225 1.6774 23 7 6.9638 -3.1322 0.6786 24 14 6.7762 -2.9915 3.4392 25 1 6.0741 -4.2136 3.9070 26 1 8.2438 -3.2090 3.5024 27 1 6.4077 -1.8455 4.3086 28 7 2.2718 -1.0617 0.0058 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 0.8900 0.5137 31 1 -0.3634 -0.8899 0.5138 32 1 1.9870 2.1596 -0.0004 33 1 5.6333 1.1316 0.0004 34 1 4.0341 6.2702 -0.3681 35 1 3.6715 4.8795 0.6864 36 1 4.8341 5.9491 2.5676 37 1 3.6276 7.0842 1.9147 38 1 5.7773 8.2385 2.3090 39 1 5.4088 8.1834 0.5686 40 1 7.7484 5.3712 -0.1826 41 1 6.6862 6.5901 -0.9333 42 1 4.5479 -2.4483 -0.5105 43 1 5.6079 -1.0185 -0.5107 44 1 7.7298 -3.7001 0.8567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516301708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:17 Heat of formation + Delta-G solvation = -45.680735 kcal Electronic energy + Delta-G solvation = -29610.238333 eV Core-core repulsion = 25285.606039 eV Total energy + Delta-G solvation = -4324.632294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.75958 -42.75078 -41.76571 -39.92761 -38.60092 -36.43814 -35.72698 -33.93748 -33.73833 -31.79969 -30.87133 -30.10533 -27.85120 -27.62649 -25.40499 -24.70887 -24.20748 -22.64692 -21.64422 -21.32407 -20.39631 -18.97065 -18.75584 -18.33987 -17.98985 -17.56785 -17.22908 -16.90545 -16.63477 -16.48560 -16.19952 -15.99040 -15.84074 -15.31623 -15.14507 -14.76328 -14.54313 -14.44970 -14.15687 -14.07651 -13.78307 -13.55470 -13.49717 -13.41488 -13.12176 -12.99383 -12.89453 -12.72064 -12.32040 -12.22799 -12.18158 -12.04045 -11.89487 -11.72888 -11.48974 -11.39398 -10.78764 -10.43933 -10.01738 -9.68328 -9.18008 -8.38943 -6.56728 -0.13293 0.71137 1.06484 1.34996 1.35627 1.46338 1.70447 1.78581 2.05820 2.21351 2.32688 2.90421 2.91928 3.36971 3.44909 3.65651 3.80065 3.83173 3.98766 4.12129 4.25037 4.32425 4.46184 4.50460 4.62389 4.63890 4.66811 4.75301 4.82004 4.88447 4.90433 4.94949 5.01471 5.11081 5.16751 5.19957 5.28021 5.30553 5.47899 5.73125 5.73420 5.92429 5.95248 6.05338 6.38395 6.53687 6.62769 6.96283 7.15362 8.67859 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010140 B = 0.003474 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.772326 B = 8058.560441 C = 9997.613807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.060 3.940 3 C -0.286 4.286 4 C 0.286 3.714 5 N -0.613 5.613 6 C 0.520 3.480 7 O -0.481 6.481 8 C 0.520 3.480 9 O -0.538 6.538 10 N -0.569 5.569 11 C 0.060 3.940 12 C -0.127 4.127 13 C -0.141 4.141 14 C 0.080 3.920 15 H 0.085 0.915 16 F -0.215 7.215 17 C 0.084 3.916 18 N -0.367 5.367 19 C 0.272 3.728 20 C -0.557 4.557 21 H 0.051 0.949 22 C 0.025 3.975 23 N -0.915 5.915 24 Si 0.970 3.030 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.270 1.270 28 N -0.323 5.323 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.183 0.817 33 H 0.424 0.576 34 H 0.096 0.904 35 H 0.132 0.868 36 H 0.063 0.937 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.030 0.970 43 H 0.041 0.959 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.214 23.041 0.152 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.317 4.317 4 C 0.065 3.935 5 N -0.260 5.260 6 C 0.303 3.697 7 O -0.356 6.356 8 C 0.301 3.699 9 O -0.415 6.415 10 N -0.302 5.302 11 C -0.060 4.060 12 C -0.165 4.165 13 C -0.179 4.179 14 C 0.043 3.957 15 H 0.103 0.897 16 F -0.195 7.195 17 C -0.039 4.039 18 N -0.153 5.153 19 C 0.153 3.847 20 C -0.596 4.596 21 H 0.069 0.931 22 C -0.177 4.177 23 N -0.553 5.553 24 Si 0.794 3.206 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.195 1.195 28 N -0.148 5.148 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.200 0.800 33 H 0.262 0.738 34 H 0.114 0.886 35 H 0.149 0.851 36 H 0.082 0.918 37 H 0.130 0.870 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.125 0.875 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.023 21.739 0.020 22.558 hybrid contribution 1.509 -0.170 0.594 1.631 sum -4.513 21.569 0.614 22.045 Atomic orbital electron populations 1.20259 0.83515 1.04145 1.04026 1.22940 0.98877 0.89875 0.98875 1.21577 0.88058 1.01384 1.20686 1.18378 0.88844 0.82863 1.03414 1.42470 1.08842 1.05466 1.69250 1.20100 0.90290 0.81627 0.77697 1.90435 1.26492 1.71940 1.46699 1.19536 0.87820 0.83792 0.78720 1.90831 1.27086 1.74194 1.49370 1.47834 1.12640 1.03492 1.66224 1.23241 0.83230 1.00561 0.98966 1.21979 1.00357 0.97042 0.97094 1.22159 0.92307 0.98658 1.04763 1.21923 0.86753 0.88660 0.98401 0.89715 1.92815 1.62658 1.67712 1.96359 1.22363 0.89678 0.92840 0.99002 1.49355 1.06393 1.02675 1.56888 1.19207 0.78615 0.89021 0.97861 1.21427 1.13914 1.32571 0.91641 0.93100 1.25730 0.95339 0.94385 1.02216 1.69997 1.19504 1.32717 1.33046 0.85371 0.77815 0.78763 0.78666 1.19689 1.19628 1.19503 1.77342 0.86132 1.23874 1.27458 0.89112 0.88204 0.91069 0.79970 0.73775 0.88618 0.85147 0.91820 0.86971 0.89134 0.89079 0.89068 0.87500 0.95151 0.94090 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.50 10.44 71.24 0.74 -0.75 16 2 C 0.06 2.20 7.20 43.06 0.31 2.51 16 3 C -0.29 -10.46 9.58 22.15 0.21 -10.25 16 4 C 0.29 11.83 7.68 131.25 1.01 12.83 16 5 N -0.61 -22.39 5.40 -309.59 -1.67 -24.06 16 6 C 0.52 15.79 7.70 87.22 0.67 16.46 16 7 O -0.48 -13.66 10.30 -3.37 -0.03 -13.70 16 8 C 0.52 14.40 7.73 87.22 0.67 15.07 16 9 O -0.54 -18.07 15.93 -3.32 -0.05 -18.12 16 10 N -0.57 -11.44 2.97 -819.80 -2.43 -13.88 16 11 C 0.06 0.89 6.01 86.51 0.52 1.41 16 12 C -0.13 -1.34 6.10 30.82 0.19 -1.15 16 13 C -0.14 -1.42 5.62 30.62 0.17 -1.25 16 14 C 0.08 1.20 4.03 30.67 0.12 1.33 16 15 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 16 F -0.21 -3.95 17.09 44.97 0.77 -3.18 16 17 C 0.08 1.44 6.18 86.36 0.53 1.98 16 18 N -0.37 -17.50 3.62 -348.38 -1.26 -18.76 16 19 C 0.27 14.34 6.02 85.63 0.52 14.85 16 20 C -0.56 -31.14 9.39 25.60 0.24 -30.90 16 21 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 22 C 0.03 1.37 5.46 84.65 0.46 1.83 16 23 N -0.91 -51.82 13.29 21.45 0.28 -51.54 16 24 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 28 N -0.32 -14.77 12.56 -47.48 -0.60 -15.37 16 29 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.18 5.84 5.83 -2.91 -0.02 5.83 16 33 H 0.42 16.23 7.48 -92.71 -0.69 15.54 16 34 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.13 2.45 4.30 -48.75 -0.21 2.24 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.09 1.92 7.01 -2.39 -0.02 1.90 16 41 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.03 1.73 8.14 -2.39 -0.02 1.72 16 43 H 0.04 2.16 7.52 -2.39 -0.02 2.14 16 44 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 Total: -1.00 -67.82 368.95 3.56 -64.26 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.16 Total: 25.11 kcal Atomic # 6 Polarization: 17.59 SS G_CDS: 6.37 Total: 23.96 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -5.68 Total: -123.60 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.09 Total: -31.82 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.77 Total: -3.18 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -67.82 3.56 -64.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516301708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.577 kcal (2) G-P(sol) polarization free energy of solvation -67.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds