Wall clock time and date at job start Tue Mar 31 2020 20:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38261 * 119.99741 * 2 1 4 4 C 1.38208 * 119.99792 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00146 * 359.95330 * 4 3 2 6 6 C 1.38213 * 120.00130 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00087 * 180.02562 * 6 5 4 8 8 S 1.81395 * 109.47641 * 89.99370 * 7 6 5 9 9 O 1.42103 * 110.54086 * 291.62701 * 8 7 6 10 10 O 1.42097 * 110.54172 * 68.37435 * 8 7 6 11 11 N 1.65595 * 104.45137 * 180.02562 * 8 7 6 12 12 C 1.47084 * 120.87905 * 269.72108 * 11 8 7 13 13 C 1.53694 * 108.27537 * 128.75663 * 12 11 8 14 14 N 1.46905 * 109.25719 * 54.07942 * 13 12 11 15 15 C 1.46907 * 110.99846 * 172.60728 * 14 13 12 16 16 C 1.50701 * 109.46719 * 59.38629 * 15 14 13 17 17 H 1.07998 * 120.00667 * 5.01406 * 16 15 14 18 18 C 1.37877 * 119.99410 * 185.01614 * 16 15 14 19 19 N 1.31516 * 120.00531 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99855 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47144 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47122 * 119.99985 * 20 18 16 23 23 H 1.48500 * 109.47266 * 240.00174 * 20 18 16 24 24 C 1.46896 * 111.27122 * 296.75933 * 14 13 12 25 25 C 1.47080 * 120.88137 * 90.00377 * 11 8 7 26 26 C 1.38217 * 120.00132 * 179.72031 * 2 1 3 27 27 H 1.09002 * 109.46774 * 90.00440 * 1 2 3 28 28 H 1.09006 * 109.47191 * 209.99991 * 1 2 3 29 29 H 1.08999 * 109.47539 * 330.00115 * 1 2 3 30 30 H 1.07998 * 119.99910 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.99712 * 179.97438 * 4 3 2 32 32 H 1.08007 * 119.99762 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.47097 * 209.99905 * 7 6 5 34 34 H 1.09003 * 109.47038 * 329.99500 * 7 6 5 35 35 H 1.09004 * 109.62963 * 248.52153 * 12 11 8 36 36 H 1.08996 * 109.63002 * 9.10440 * 12 11 8 37 37 H 1.09004 * 109.64721 * 294.08126 * 13 12 11 38 38 H 1.09003 * 109.42511 * 173.95009 * 13 12 11 39 39 H 1.09002 * 109.46939 * 179.38414 * 15 14 13 40 40 H 1.08998 * 109.47273 * 299.38566 * 15 14 13 41 41 H 0.97000 * 120.00453 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.48889 * 303.14515 * 24 14 13 43 43 H 1.08995 * 109.51558 * 183.08164 * 24 14 13 44 44 H 1.08995 * 109.63081 * 350.89007 * 25 11 8 45 45 H 1.08990 * 109.63006 * 111.47885 * 25 11 8 46 46 H 1.07996 * 120.00166 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0001 0.0020 6 6 3.5807 -1.1969 0.0025 7 6 4.3342 -2.5020 0.0047 8 16 4.6348 -3.0239 1.7158 9 8 5.5573 -2.1482 2.3494 10 8 3.4149 -3.3853 2.3484 11 7 5.4604 -4.4522 1.5732 12 6 4.7441 -5.7355 1.5136 13 6 5.2529 -6.5151 0.2907 14 7 6.7163 -6.6238 0.3599 15 6 7.2288 -7.5095 -0.6941 16 6 6.8356 -6.9647 -2.0431 17 1 6.3333 -6.0114 -2.1151 18 6 7.1171 -7.6836 -3.1855 19 7 7.7284 -8.8448 -3.0979 20 14 6.6291 -7.0088 -4.8576 21 1 5.9591 -5.6948 -4.6848 22 1 7.8429 -6.8384 -5.6961 23 1 5.6980 -7.9563 -5.5213 24 6 7.3527 -5.3016 0.2921 25 6 6.9297 -4.4717 1.5089 26 6 2.1981 -1.1970 0.0058 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6582 2.1327 -0.0004 31 1 4.1203 2.1328 0.0001 32 1 5.3517 0.0002 0.0029 33 1 3.7457 -3.2622 -0.5090 34 1 5.2872 -2.3721 -0.5082 35 1 4.9384 -6.3058 2.4220 36 1 3.6741 -5.5533 1.4141 37 1 4.9699 -5.9906 -0.6220 38 1 4.8137 -7.5128 0.2884 39 1 8.3154 -7.5635 -0.6268 40 1 6.8069 -8.5066 -0.5679 41 1 7.9268 -9.3503 -3.9017 42 1 7.0404 -4.7941 -0.6207 43 1 8.4363 -5.4187 0.2905 44 1 7.3053 -3.4537 1.4062 45 1 7.3299 -4.9229 2.4167 46 1 1.6582 -2.1323 0.0100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601536821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:21 Heat of formation + Delta-G solvation = -42.281194 kcal Electronic energy + Delta-G solvation = -27776.410458 eV Core-core repulsion = 23985.846004 eV Total energy + Delta-G solvation = -3790.564454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.71081 -38.38158 -37.13304 -35.92072 -34.49183 -33.94516 -32.29455 -32.28642 -30.69894 -27.97207 -27.69233 -27.02066 -25.04327 -23.26521 -22.49639 -22.08678 -21.18866 -19.93558 -18.64995 -17.64618 -16.90358 -16.46343 -16.25590 -16.21219 -15.56410 -15.16237 -14.88573 -14.45992 -14.32514 -14.16728 -14.00615 -13.89317 -13.57261 -13.31472 -13.16244 -13.00057 -12.48594 -12.46209 -12.37355 -12.33888 -12.07316 -11.77758 -11.70633 -11.53522 -11.27726 -11.22966 -11.18868 -11.03777 -11.00006 -10.69580 -10.55481 -10.28619 -9.91825 -9.72866 -9.10117 -8.94071 -8.68488 -8.52983 -7.29479 -6.12342 -4.22325 0.11669 1.10216 1.13696 2.66847 3.18444 3.27485 3.28750 3.45153 3.79017 4.06800 4.20793 4.31223 4.50845 4.62221 4.79012 4.85589 4.87742 4.94819 5.04218 5.17926 5.18788 5.31437 5.34596 5.41414 5.44489 5.54703 5.56297 5.76078 5.77262 5.78944 5.86343 5.86651 6.09569 6.17439 6.20066 6.23059 6.30606 6.46294 6.53710 6.64382 6.71018 6.75124 7.16565 7.42645 7.79865 7.92341 8.16327 8.18267 8.88022 9.45239 10.92592 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.003483 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.664215 B = 8037.883375 C = 9254.511471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.116 4.116 4 C -0.114 4.114 5 C -0.112 4.112 6 C -0.083 4.083 7 C -0.591 4.591 8 S 2.609 3.391 9 O -0.953 6.953 10 O -0.953 6.953 11 N -0.996 5.996 12 C 0.123 3.877 13 C 0.050 3.950 14 N -0.538 5.538 15 C 0.187 3.813 16 C -0.552 4.552 17 H 0.056 0.944 18 C 0.066 3.934 19 N -0.888 5.888 20 Si 0.887 3.113 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.047 3.953 25 C 0.124 3.876 26 C -0.107 4.107 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.079 0.921 39 H 0.029 0.971 40 H 0.036 0.964 41 H 0.263 0.737 42 H 0.040 0.960 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.992 16.596 6.716 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.085 4.085 3 C -0.134 4.134 4 C -0.132 4.132 5 C -0.131 4.131 6 C -0.085 4.085 7 C -0.717 4.717 8 S 2.702 3.298 9 O -0.943 6.943 10 O -0.943 6.943 11 N -0.834 5.834 12 C -0.002 4.002 13 C -0.080 4.080 14 N -0.262 5.262 15 C 0.061 3.939 16 C -0.591 4.591 17 H 0.074 0.926 18 C -0.137 4.137 19 N -0.526 5.526 20 Si 0.715 3.285 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.083 4.083 25 C -0.001 4.001 26 C -0.126 4.126 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.025 16.612 7.882 20.942 hybrid contribution -0.216 0.412 -2.830 2.868 sum -10.241 17.024 5.052 20.499 Atomic orbital electron populations 1.20824 0.90757 1.03157 1.02540 1.19938 0.96414 0.92853 0.99324 1.21134 0.94317 0.97637 1.00337 1.21153 0.94312 0.97969 0.99737 1.21188 1.00522 0.91789 0.99599 1.18990 0.93608 0.92414 1.03467 1.29785 1.09964 1.04198 1.27762 1.05186 0.74061 0.73401 0.77158 1.93568 1.62990 1.65744 1.72024 1.93567 1.46583 1.82088 1.72062 1.57736 1.15669 1.20759 1.89279 1.21784 0.94960 0.83191 1.00267 1.22344 0.90550 0.99934 0.95220 1.62398 1.03812 1.10473 1.49546 1.19785 0.95767 0.92080 0.86230 1.21763 1.39285 1.05574 0.92516 0.92558 1.24957 0.94854 0.94737 0.99126 1.69942 1.40874 1.12865 1.28969 0.86623 0.78384 0.79003 0.84472 1.19981 1.20882 1.20873 1.22284 0.99615 0.91023 0.95378 1.21664 0.77708 1.00485 1.00236 1.21080 0.93078 0.98564 0.99894 0.90961 0.91112 0.91342 0.85693 0.85385 0.85163 0.83978 0.83967 0.90523 0.89865 0.93929 0.90280 0.95278 0.94546 0.92757 0.94175 0.90320 0.89881 0.90527 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.09 -0.88 5.88 -104.62 -0.62 -1.49 16 3 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 4 C -0.11 -1.13 10.05 -39.58 -0.40 -1.52 16 5 C -0.11 -1.29 9.70 -39.58 -0.38 -1.67 16 6 C -0.08 -1.03 5.14 -104.63 -0.54 -1.57 16 7 C -0.59 -7.06 6.30 36.00 0.23 -6.83 16 8 S 2.61 37.18 5.40 -107.50 -0.58 36.59 16 9 O -0.95 -15.51 16.79 -57.54 -0.97 -16.48 16 10 O -0.95 -15.52 16.78 -57.54 -0.97 -16.49 16 11 N -1.00 -14.50 3.25 -112.98 -0.37 -14.87 16 12 C 0.12 1.81 6.50 -3.36 -0.02 1.78 16 13 C 0.05 0.87 5.17 -3.46 -0.02 0.86 16 14 N -0.54 -10.59 4.83 -235.46 -1.14 -11.73 16 15 C 0.19 4.51 5.11 -4.97 -0.03 4.48 16 16 C -0.55 -14.27 7.75 -34.44 -0.27 -14.54 16 17 H 0.06 1.43 5.88 -52.49 -0.31 1.12 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 20 Si 0.89 20.62 29.54 -169.99 -5.02 15.59 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.05 0.82 5.24 -3.70 -0.02 0.80 16 25 C 0.12 1.81 6.46 -3.60 -0.02 1.79 16 26 C -0.11 -1.26 9.36 -39.58 -0.37 -1.63 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 29 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 33 H 0.14 1.53 8.09 -51.92 -0.42 1.11 16 34 H 0.14 1.52 8.09 -51.92 -0.42 1.10 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.08 1.08 7.19 -51.93 -0.37 0.70 16 37 H 0.04 0.79 6.79 -51.93 -0.35 0.44 16 38 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 39 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 40 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.04 0.73 6.92 -51.93 -0.36 0.38 16 43 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 44 H 0.08 1.06 7.19 -51.93 -0.37 0.69 16 45 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -32.49 382.69 -12.33 -44.82 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.22 Total: 1.08 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -2.57 Total: -19.85 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.77 Total: -51.04 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.93 Total: -32.96 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 37.18 SS G_CDS: -0.58 Total: 36.59 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.49 -12.33 -44.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601536821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.534 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds