Wall clock time and date at job start Tue Mar 31 2020 20:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00534 * 2 1 4 4 C 1.50691 * 109.47435 * 275.00786 * 3 2 1 5 5 H 1.08005 * 120.00131 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00115 * 179.97438 * 4 3 2 7 7 N 1.31507 * 119.99700 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00033 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47024 * 179.97438 * 8 6 4 10 10 H 1.48507 * 109.46888 * 299.99534 * 8 6 4 11 11 H 1.48503 * 109.47337 * 59.99557 * 8 6 4 12 12 S 1.65602 * 119.99944 * 180.02562 * 2 1 3 13 13 O 1.42109 * 106.39953 * 17.51811 * 12 2 1 14 14 O 1.42103 * 106.40463 * 150.43806 * 12 2 1 15 15 N 1.65595 * 107.22140 * 263.98048 * 12 2 1 16 16 C 1.47425 * 125.64858 * 279.01334 * 15 12 2 17 17 C 1.55121 * 104.72541 * 155.81017 * 16 15 12 18 18 C 1.55159 * 101.48694 * 37.29808 * 17 16 15 19 19 C 1.47020 * 125.65059 * 99.31408 * 15 12 2 20 20 C 1.53008 * 109.88366 * 300.44186 * 19 15 12 21 21 C 1.50699 * 109.88465 * 61.45437 * 19 15 12 22 22 C 1.38238 * 119.99458 * 359.72764 * 21 19 15 23 23 C 1.38231 * 119.99463 * 179.81177 * 22 21 19 24 24 C 1.38241 * 120.00389 * 0.39282 * 23 22 21 25 25 C 1.38233 * 119.99675 * 359.86324 * 24 23 22 26 26 C 1.38231 * 120.00014 * 179.97438 * 21 19 15 27 27 H 1.08997 * 109.47606 * 94.08466 * 1 2 3 28 28 H 1.09001 * 109.47334 * 214.08743 * 1 2 3 29 29 H 1.09004 * 109.46953 * 334.08445 * 1 2 3 30 30 H 1.08999 * 109.47024 * 155.00222 * 3 2 1 31 31 H 1.09006 * 109.46316 * 35.00300 * 3 2 1 32 32 H 0.96996 * 120.00714 * 0.02562 * 7 6 4 33 33 H 1.08998 * 110.36343 * 274.74565 * 16 15 12 34 34 H 1.09004 * 110.36764 * 37.06197 * 16 15 12 35 35 H 1.08997 * 111.19428 * 279.19090 * 17 16 15 36 36 H 1.09005 * 110.93753 * 155.28835 * 17 16 15 37 37 H 1.09000 * 110.71777 * 205.96942 * 18 17 16 38 38 H 1.08994 * 110.72352 * 82.69106 * 18 17 16 39 39 H 1.08995 * 109.46581 * 66.86633 * 20 19 15 40 40 H 1.08996 * 109.47226 * 186.86447 * 20 19 15 41 41 H 1.08994 * 109.46918 * 306.86983 * 20 19 15 42 42 H 1.07993 * 120.00150 * 359.97438 * 22 21 19 43 43 H 1.08003 * 120.00255 * 180.23392 * 23 22 21 44 44 H 1.08003 * 119.99821 * 179.83475 * 24 23 22 45 45 H 1.07994 * 119.99887 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.00461 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3414 1.7657 -1.4153 5 1 1.9288 1.1936 -2.2332 6 6 2.9998 2.9509 -1.6662 7 7 3.5018 3.6478 -0.6703 8 14 3.1787 3.5667 -3.4207 9 1 3.9202 4.8534 -3.4205 10 1 3.9253 2.5648 -4.2232 11 1 1.8325 3.7718 -4.0131 12 16 2.2929 -1.4342 -0.0006 13 8 1.3677 -2.4315 -0.4114 14 8 3.5205 -1.1886 -0.6731 15 7 2.6817 -1.7765 1.5722 16 6 3.8179 -1.2076 2.3198 17 6 3.4041 -1.3187 3.8107 18 6 2.6610 -2.6807 3.8245 19 6 1.9547 -2.7028 2.4524 20 6 0.5035 -2.2431 2.6069 21 6 1.9925 -4.0944 1.8754 22 6 2.6455 -4.3293 0.6798 23 6 2.6836 -5.6065 0.1524 24 6 2.0618 -6.6473 0.8164 25 6 1.4043 -6.4115 2.0093 26 6 1.3700 -5.1350 2.5390 27 1 -0.3634 -0.0732 -1.0250 28 1 -0.3634 -0.8511 0.5760 29 1 -0.3633 0.9244 0.4492 30 1 3.1858 1.1175 0.4343 31 1 1.6502 2.0042 0.5895 32 1 3.4093 3.3279 0.2407 33 1 4.7232 -1.7845 2.1309 34 1 3.9682 -0.1635 2.0451 35 1 2.7359 -0.5062 4.0958 36 1 4.2812 -1.3457 4.4574 37 1 1.9320 -2.7140 4.6341 38 1 3.3688 -3.5054 3.9071 39 1 -0.0118 -2.3401 1.6514 40 1 0.0042 -2.8607 3.3533 41 1 0.4846 -1.2010 2.9258 42 1 3.1282 -3.5154 0.1592 43 1 3.1970 -5.7907 -0.7798 44 1 2.0893 -7.6447 0.4029 45 1 0.9181 -7.2245 2.5278 46 1 0.8568 -4.9509 3.4712 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882690621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:56 Heat of formation + Delta-G solvation = -34.400994 kcal Electronic energy + Delta-G solvation = -29525.188393 eV Core-core repulsion = 25734.965650 eV Total energy + Delta-G solvation = -3790.222743 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.24569 -37.91519 -36.70505 -35.69755 -35.29122 -32.66031 -32.55882 -31.40609 -30.41120 -29.37255 -27.49391 -25.84869 -24.85840 -23.08209 -22.70121 -22.43379 -21.43619 -20.43022 -18.45405 -17.92112 -16.90269 -16.74403 -16.17353 -16.04090 -15.46527 -14.91493 -14.63941 -14.19588 -13.95620 -13.71764 -13.60854 -13.51177 -13.38297 -13.28589 -13.14573 -12.72615 -12.48393 -12.32074 -12.19284 -12.01644 -11.81069 -11.57722 -11.48960 -11.31565 -11.26583 -11.22433 -11.00522 -10.88318 -10.77038 -10.61747 -10.57335 -10.51916 -10.07583 -9.35955 -9.01875 -8.83201 -8.61446 -8.40415 -7.96939 -6.41867 -4.13301 1.06642 1.38519 1.46821 3.38539 3.44399 3.48716 3.65801 3.80139 3.94843 4.36879 4.51525 4.53358 4.63703 4.86262 4.92463 4.98917 5.02695 5.08100 5.13031 5.29076 5.36759 5.42473 5.46676 5.48075 5.54808 5.65582 5.71019 5.78839 5.80528 5.86302 5.92758 5.98644 6.03397 6.06525 6.14541 6.26487 6.31570 6.34748 6.48596 6.51073 6.55962 6.74231 6.83906 7.01385 7.13456 7.42273 7.97892 8.42325 8.77248 9.55133 10.96035 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018487 B = 0.004157 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.193463 B = 6734.590763 C = 7281.179571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.993 5.993 3 C 0.249 3.751 4 C -0.606 4.606 5 H 0.054 0.946 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 1.068 2.932 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.287 1.287 12 S 2.789 3.211 13 O -0.981 6.981 14 O -0.961 6.961 15 N -1.015 6.015 16 C 0.119 3.881 17 C -0.128 4.128 18 C -0.113 4.113 19 C 0.221 3.779 20 C -0.169 4.169 21 C -0.082 4.082 22 C -0.076 4.076 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.110 4.110 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.022 0.978 31 H 0.024 0.976 32 H 0.266 0.734 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.286 -16.081 12.142 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.835 5.835 3 C 0.126 3.874 4 C -0.646 4.646 5 H 0.072 0.928 6 C -0.183 4.183 7 N -0.545 5.545 8 Si 0.896 3.104 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.213 1.213 12 S 2.799 3.201 13 O -0.966 6.966 14 O -0.945 6.945 15 N -0.852 5.852 16 C -0.006 4.006 17 C -0.167 4.167 18 C -0.152 4.152 19 C 0.133 3.867 20 C -0.227 4.227 21 C -0.084 4.084 22 C -0.094 4.094 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.142 4.142 26 C -0.128 4.128 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.467 -15.302 10.353 18.798 hybrid contribution -0.752 -0.906 0.993 1.540 sum -4.219 -16.208 11.346 20.230 Atomic orbital electron populations 1.21293 0.79817 1.01524 1.01358 1.57555 1.14343 1.23053 1.88535 1.19123 0.90112 0.79826 0.98322 1.22293 1.40232 1.09495 0.92559 0.92794 1.25815 0.92932 0.93542 1.05974 1.70831 1.43257 1.40134 1.00307 0.83559 0.76570 0.76336 0.73961 1.20582 1.21163 1.21331 1.01934 0.73596 0.72371 0.72221 1.93606 1.64757 1.57886 1.80305 1.93646 1.45229 1.85473 1.70154 1.59538 1.38780 1.55419 1.31419 1.22030 0.88607 0.98975 0.91026 1.22814 1.00668 0.97289 0.95891 1.22717 0.99595 0.98309 0.94602 1.19413 0.92389 0.85144 0.89756 1.22468 0.94577 1.02189 1.03511 1.20017 0.98081 0.94921 0.95371 1.20682 0.98029 0.96154 0.94574 1.21087 0.99799 0.92687 0.99810 1.21086 0.98460 0.98795 0.95742 1.21039 1.00091 0.96675 0.96429 1.20790 0.99767 0.92319 0.99967 0.93214 0.92592 0.91418 0.96072 0.95762 0.92424 0.91371 0.90337 0.90406 0.90036 0.89994 0.90411 0.90957 0.90932 0.91177 0.89139 0.86090 0.86237 0.86176 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.92 10.29 59.84 0.62 2.54 16 2 N -0.99 -21.41 3.23 -123.06 -0.40 -21.80 16 3 C 0.25 6.26 4.42 -5.20 -0.02 6.24 16 4 C -0.61 -17.50 9.38 -34.44 -0.32 -17.82 16 5 H 0.05 1.59 7.81 -52.48 -0.41 1.18 16 6 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 7 N -0.91 -27.22 13.65 55.43 0.76 -26.46 16 8 Si 1.07 25.83 29.90 -169.99 -5.08 20.75 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 12 S 2.79 58.56 4.13 -107.50 -0.44 58.11 16 13 O -0.98 -20.73 12.68 -57.17 -0.72 -21.45 16 14 O -0.96 -24.27 16.91 -57.17 -0.97 -25.23 16 15 N -1.01 -16.56 2.55 -98.75 -0.25 -16.81 16 16 C 0.12 1.71 7.09 -2.41 -0.02 1.69 16 17 C -0.13 -1.33 7.10 -24.47 -0.17 -1.50 16 18 C -0.11 -1.13 5.74 -24.89 -0.14 -1.28 16 19 C 0.22 2.94 0.65 -131.99 -0.09 2.85 16 20 C -0.17 -2.05 7.65 37.16 0.28 -1.76 16 21 C -0.08 -1.17 4.25 -104.63 -0.44 -1.61 16 22 C -0.08 -1.25 7.26 -39.58 -0.29 -1.53 16 23 C -0.12 -1.66 10.05 -39.58 -0.40 -2.05 16 24 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 25 C -0.12 -1.36 10.05 -39.58 -0.40 -1.75 16 26 C -0.11 -1.27 8.97 -39.58 -0.36 -1.63 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.86 5.50 -51.93 -0.29 0.58 16 29 H 0.07 1.13 7.90 -51.93 -0.41 0.72 16 30 H 0.02 0.56 6.90 -51.93 -0.36 0.20 16 31 H 0.02 0.61 7.81 -51.93 -0.41 0.20 16 32 H 0.27 7.76 7.22 -40.82 -0.29 7.47 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.23 7.40 -51.93 -0.38 0.85 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.64 7.79 -51.93 -0.40 0.23 16 38 H 0.08 0.75 7.85 -51.93 -0.41 0.34 16 39 H 0.07 1.02 5.42 -51.93 -0.28 0.73 16 40 H 0.07 0.67 7.53 -51.93 -0.39 0.28 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.69 4.68 -41.19 -0.19 1.50 16 43 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 44 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 46 H 0.12 1.07 7.62 -52.49 -0.40 0.67 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -35.18 369.07 -10.59 -45.77 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.80 Total: 0.51 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -2.24 Total: -18.94 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: 0.11 Total: -65.08 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -1.69 Total: -46.69 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.08 Total: 20.75 kcal Atomic # 16 Polarization: 58.56 SS G_CDS: -0.44 Total: 58.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.18 -10.59 -45.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882690621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.371 kcal (2) G-P(sol) polarization free energy of solvation -35.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds