Wall clock time and date at job start Tue Mar 31 2020 20:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35903 * 117.00049 * 2 1 4 4 C 1.38748 * 120.05538 * 359.73131 * 3 2 1 5 5 C 1.38123 * 119.94318 * 180.25154 * 4 3 2 6 6 C 1.38282 * 120.05864 * 0.04105 * 5 4 3 7 7 C 1.38248 * 120.11148 * 359.95155 * 6 5 4 8 8 C 1.50697 * 119.97290 * 180.02562 * 7 6 5 9 9 N 1.46902 * 109.46952 * 259.97936 * 8 7 6 10 10 C 1.46899 * 110.99706 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47235 * 179.97438 * 10 9 8 12 12 N 1.46498 * 109.47379 * 180.02562 * 11 10 9 13 13 C 1.34771 * 119.99880 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00303 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99796 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47038 * 179.97438 * 15 13 12 17 17 C 1.76209 * 100.00043 * 179.97438 * 16 15 13 18 18 H 1.07998 * 119.99708 * 0.02562 * 17 16 15 19 19 C 1.38795 * 119.99731 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00521 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99624 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47168 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46923 * 120.00195 * 21 19 17 24 24 H 1.48500 * 109.46898 * 240.00070 * 21 19 17 25 25 C 1.38165 * 120.05352 * 0.02944 * 7 6 5 26 26 C 1.50705 * 120.02914 * 179.97438 * 25 7 6 27 27 H 1.08999 * 109.47281 * 59.99918 * 1 2 3 28 28 H 1.09002 * 109.47292 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47202 * 299.99846 * 1 2 3 30 30 H 1.07998 * 120.02904 * 0.24228 * 4 3 2 31 31 H 1.08004 * 119.96722 * 179.97438 * 5 4 3 32 32 H 1.08000 * 119.94449 * 179.97438 * 6 5 4 33 33 H 1.08991 * 109.47122 * 19.97990 * 8 7 6 34 34 H 1.08997 * 109.46982 * 139.98413 * 8 7 6 35 35 H 1.00900 * 110.99887 * 56.04824 * 9 8 7 36 36 H 1.08996 * 109.47394 * 300.00441 * 10 9 8 37 37 H 1.09002 * 109.47151 * 60.00149 * 10 9 8 38 38 H 1.09005 * 109.47245 * 300.00281 * 11 10 9 39 39 H 1.09002 * 109.46902 * 60.00030 * 11 10 9 40 40 H 0.96998 * 119.99645 * 0.02562 * 12 11 10 41 41 H 1.08993 * 109.47282 * 299.99566 * 15 13 12 42 42 H 1.08996 * 109.47406 * 60.00187 * 15 13 12 43 43 H 0.96998 * 120.00362 * 179.97438 * 20 19 17 44 44 H 1.08993 * 109.46778 * 270.02066 * 26 25 7 45 45 H 1.08998 * 109.46911 * 30.02242 * 26 25 7 46 46 H 1.09005 * 109.46956 * 150.01896 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0056 5 6 1.9209 3.6047 -0.0109 6 6 3.3019 3.6758 -0.0114 7 6 4.0560 2.5171 -0.0056 8 6 5.5608 2.5981 -0.0056 9 7 6.0631 2.3773 -1.3683 10 6 7.5297 2.4499 -1.4069 11 6 8.0145 2.2149 -2.8390 12 7 9.4772 2.2867 -2.8774 13 6 10.1302 2.1098 -4.0430 14 8 9.5069 1.8907 -5.0601 15 6 11.6348 2.1842 -4.0827 16 16 12.2082 1.9060 -5.7767 17 6 13.9484 2.0449 -5.5375 18 1 14.3437 2.2461 -4.5527 19 6 14.8111 1.8948 -6.6143 20 7 14.3294 1.6491 -7.8144 21 14 16.6561 2.0414 -6.3605 22 1 16.9383 2.3192 -4.9293 23 1 17.3129 0.7701 -6.7574 24 1 17.1835 3.1521 -7.1931 25 6 3.4311 1.2848 0.0000 26 6 4.2537 0.0221 0.0057 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2128 2.3203 -0.0061 31 1 1.3340 4.5113 -0.0157 32 1 3.7922 4.6380 -0.0159 33 1 5.8715 3.5837 0.3409 34 1 5.9657 1.8350 0.6590 35 1 5.6517 3.0327 -2.0159 36 1 7.8538 3.4346 -1.0702 37 1 7.9487 1.6860 -0.7519 38 1 7.6905 1.2299 -3.1752 39 1 7.5955 2.9785 -3.4943 40 1 9.9757 2.4615 -2.0639 41 1 11.9589 3.1690 -3.7462 42 1 12.0538 1.4204 -3.4277 43 1 14.9323 1.5445 -8.5670 44 1 4.4522 -0.2868 -1.0205 45 1 5.1976 0.2057 0.5190 46 1 3.7062 -0.7659 0.5229 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:02 Heat of formation + Delta-G solvation = -54.489049 kcal Electronic energy + Delta-G solvation = -25011.052562 eV Core-core repulsion = 21219.958736 eV Total energy + Delta-G solvation = -3791.093826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.69769 -39.18387 -38.34983 -36.58155 -34.39308 -33.07659 -32.41729 -31.33641 -29.79616 -28.00231 -27.90055 -26.81500 -25.48761 -24.74373 -22.33007 -22.10461 -21.03590 -20.32857 -18.11837 -17.80282 -17.04708 -16.38259 -16.24602 -16.14147 -16.00500 -15.88082 -15.20654 -14.81246 -14.77590 -14.50284 -14.35920 -13.87115 -13.76596 -13.48547 -13.26016 -13.09169 -12.90899 -12.60326 -12.53447 -12.36234 -12.23367 -12.08602 -11.74753 -11.53910 -11.45288 -11.41899 -11.06175 -11.00811 -10.99498 -10.74736 -9.79575 -9.41187 -9.10688 -9.06774 -8.87048 -8.79034 -8.45391 -8.21536 -6.48584 -6.20647 -3.91090 0.90471 1.08998 2.87977 2.98614 3.12564 3.22376 3.25511 3.30907 3.36919 3.66441 4.17044 4.21343 4.34737 4.40915 4.62140 4.63984 4.68411 4.72005 4.82104 4.84524 4.92624 5.01692 5.06868 5.14574 5.16502 5.19837 5.25723 5.37417 5.44585 5.52973 5.63036 5.64249 5.79095 5.91220 5.93746 5.98515 6.03927 6.08511 6.15272 6.24686 6.39556 6.54225 6.65850 6.97599 7.02529 7.60901 7.71707 8.36507 8.63602 9.24766 10.86845 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031851 B = 0.001446 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.872655 B =19360.079343 C =19618.949869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.121 3.879 4 C -0.204 4.204 5 C -0.089 4.089 6 C -0.146 4.146 7 C -0.053 4.053 8 C 0.100 3.900 9 N -0.678 5.678 10 C 0.050 3.950 11 C 0.123 3.877 12 N -0.739 5.739 13 C 0.532 3.468 14 O -0.516 6.516 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.087 4.087 26 C -0.102 4.102 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.346 0.654 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.997 2.161 22.112 34.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.076 3.924 4 C -0.223 4.223 5 C -0.107 4.107 6 C -0.165 4.165 7 C -0.054 4.054 8 C -0.029 4.029 9 N -0.310 5.310 10 C -0.080 4.080 11 C -0.002 4.002 12 N -0.394 5.394 13 C 0.318 3.682 14 O -0.390 6.390 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.088 4.088 26 C -0.158 4.158 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.165 0.835 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.231 0.769 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -27.930 0.870 20.266 34.519 hybrid contribution 1.841 1.667 1.812 3.074 sum -26.088 2.536 22.078 34.270 Atomic orbital electron populations 1.23052 0.78512 1.03969 1.01238 1.86078 1.21171 1.26773 1.88681 1.18844 0.91843 0.84224 0.97496 1.21219 0.99927 0.92436 1.08697 1.20851 0.94497 0.96950 0.98428 1.20962 0.93860 0.97793 1.03837 1.19421 0.94959 0.91866 0.99136 1.20862 0.90315 1.00575 0.91103 1.60321 1.05533 1.58137 1.06989 1.22110 0.88098 1.00578 0.97193 1.21131 0.80416 1.03027 0.95593 1.45894 1.06737 1.75767 1.11027 1.20290 0.89675 0.75543 0.82701 1.90710 1.68818 1.46311 1.33166 1.23526 0.93483 1.04993 1.08361 1.85419 1.04619 1.93427 0.99955 1.22914 0.91274 1.56584 0.97569 0.90871 1.24993 0.99598 0.94553 0.94441 1.70029 1.35430 1.45423 0.99396 0.86116 0.83057 0.77941 0.78371 1.19628 1.20561 1.20583 1.19099 0.90280 0.95994 1.03466 1.20613 0.98473 0.93719 1.03019 0.92664 0.88211 0.92791 0.85629 0.85868 0.86062 0.94049 0.89499 0.83518 0.94483 0.90183 0.90630 0.91827 0.76920 0.89248 0.89187 0.92237 0.90519 0.91481 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.76 9.54 -19.43 -0.19 -2.95 16 3 C 0.12 1.11 6.66 -39.22 -0.26 0.85 16 4 C -0.20 -1.57 9.04 -39.44 -0.36 -1.93 16 5 C -0.09 -0.64 10.04 -39.61 -0.40 -1.04 16 6 C -0.15 -1.09 9.66 -39.56 -0.38 -1.47 16 7 C -0.05 -0.44 5.39 -104.65 -0.56 -1.00 16 8 C 0.10 0.71 5.20 -4.98 -0.03 0.69 16 9 N -0.68 -5.46 6.49 -115.06 -0.75 -6.21 16 10 C 0.05 0.40 5.80 -3.82 -0.02 0.38 16 11 C 0.12 1.42 5.93 -4.04 -0.02 1.40 16 12 N -0.74 -9.73 5.56 -60.29 -0.33 -10.07 16 13 C 0.53 10.00 7.85 -10.99 -0.09 9.92 16 14 O -0.52 -11.94 15.86 5.56 0.09 -11.85 16 15 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.54 -15.31 9.50 30.94 0.29 -15.01 16 18 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 21 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C -0.09 -0.81 5.89 -104.47 -0.62 -1.43 16 26 C -0.10 -0.89 9.38 36.01 0.34 -0.55 16 27 H 0.05 0.23 7.65 -51.93 -0.40 -0.16 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.21 7.67 -51.93 -0.40 -0.19 16 30 H 0.13 0.71 6.30 -52.49 -0.33 0.37 16 31 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 32 H 0.12 0.71 8.03 -52.49 -0.42 0.29 16 33 H 0.04 0.26 8.00 -51.93 -0.42 -0.16 16 34 H 0.09 0.60 6.41 -51.93 -0.33 0.26 16 35 H 0.35 2.76 8.72 -39.29 -0.34 2.41 16 36 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.40 3.95 8.47 -40.82 -0.35 3.61 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.52 6.13 -51.93 -0.32 0.20 16 46 H 0.06 0.54 7.54 -51.93 -0.39 0.15 16 LS Contribution 398.16 15.07 6.00 6.00 Total: -1.00 -35.67 398.16 -9.71 -45.38 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.04 Total: 1.62 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -0.99 Total: -8.94 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.35 Total: -41.81 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.10 Total: -14.80 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.67 -9.71 -45.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.109 kcal (2) G-P(sol) polarization free energy of solvation -35.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds