Wall clock time and date at job start Tue Mar 31 2020 20:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 117.00418 * 2 1 4 4 C 1.38753 * 120.04992 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.94242 * 179.72579 * 4 3 2 6 6 C 1.38287 * 120.05248 * 0.52638 * 5 4 3 7 7 C 1.50697 * 119.94434 * 179.72488 * 6 5 4 8 8 N 1.46905 * 109.47066 * 269.72652 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46916 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.46871 * 179.97438 * 10 9 8 12 12 C 1.34771 * 119.99820 * 179.97438 * 11 10 9 13 13 O 1.21288 * 120.00364 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99955 * 179.97438 * 12 11 10 15 15 S 1.81007 * 109.47197 * 180.02562 * 14 12 11 16 16 C 1.76204 * 99.99850 * 180.02562 * 15 14 12 17 17 H 1.07987 * 120.00234 * 359.97438 * 16 15 14 18 18 C 1.38802 * 119.99570 * 179.97438 * 16 15 14 19 19 N 1.31632 * 119.99865 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99715 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47409 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47116 * 120.00560 * 20 18 16 23 23 H 1.48499 * 109.47123 * 240.00098 * 20 18 16 24 24 C 1.38240 * 120.11151 * 359.45026 * 6 5 4 25 25 C 1.38164 * 120.05686 * 0.29629 * 24 6 5 26 26 C 1.50707 * 120.03133 * 179.97438 * 25 24 6 27 27 H 1.09001 * 109.46757 * 300.00100 * 1 2 3 28 28 H 1.09003 * 109.46585 * 60.00075 * 1 2 3 29 29 H 1.08994 * 109.47164 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.03189 * 0.02562 * 4 3 2 31 31 H 1.07995 * 119.97218 * 180.27119 * 5 4 3 32 32 H 1.09001 * 109.47558 * 149.72816 * 7 6 5 33 33 H 1.08998 * 109.47216 * 29.72478 * 7 6 5 34 34 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 35 35 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 36 36 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 37 37 H 1.08995 * 109.46615 * 299.99641 * 10 9 8 38 38 H 1.08996 * 109.46939 * 60.00272 * 10 9 8 39 39 H 0.97000 * 119.99841 * 0.02562 * 11 10 9 40 40 H 1.08993 * 109.47735 * 300.00304 * 14 12 11 41 41 H 1.09006 * 109.46731 * 60.00820 * 14 12 11 42 42 H 0.97005 * 119.99662 * 179.97438 * 19 18 16 43 43 H 1.08002 * 119.97335 * 180.27607 * 24 6 5 44 44 H 1.08996 * 109.46849 * 89.99599 * 26 25 24 45 45 H 1.08992 * 109.47350 * 210.00259 * 26 25 24 46 46 H 1.09003 * 109.46702 * 330.00499 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9210 3.6048 0.0063 6 6 3.3020 3.6758 0.0005 7 6 3.9862 5.0185 0.0005 8 7 4.2084 5.4548 -1.3846 9 6 4.8757 6.7629 -1.4238 10 6 5.0890 7.1832 -2.8794 11 7 5.7539 8.4881 -2.9184 12 6 6.0455 9.0605 -4.1032 13 8 5.7571 8.4957 -5.1370 14 6 6.7290 10.4031 -4.1434 15 16 6.9815 10.9002 -5.8654 16 6 7.7739 12.4550 -5.6219 17 1 7.9581 12.8164 -4.6210 18 6 8.1615 13.2154 -6.7165 19 7 7.9365 12.7751 -7.9365 20 14 9.0010 14.8640 -6.4584 21 1 9.1359 15.1284 -5.0034 22 1 10.3479 14.8368 -7.0831 23 1 8.1870 15.9372 -7.0836 24 6 4.0560 2.5171 0.0004 25 6 3.4312 1.2848 -0.0001 26 6 4.2537 0.0220 -0.0007 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2129 2.3203 0.0014 31 1 1.3341 4.5113 0.0111 32 1 4.9442 4.9382 0.5142 33 1 3.3582 5.7462 0.5143 34 1 3.3417 5.4750 -1.9008 35 1 4.2542 7.5031 -0.9196 36 1 5.8398 6.6942 -0.9200 37 1 5.7103 6.4432 -3.3838 38 1 4.1247 7.2521 -3.3827 39 1 5.9849 8.9396 -2.0916 40 1 6.1069 11.1428 -3.6396 41 1 7.6931 10.3351 -3.6394 42 1 8.2070 13.3067 -8.7015 43 1 5.1345 2.5752 0.0004 44 1 4.4522 -0.2827 1.0268 45 1 3.7064 -0.7679 -0.5148 46 1 5.1977 0.2037 -0.5145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799361.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:08 Heat of formation + Delta-G solvation = -57.747085 kcal Electronic energy + Delta-G solvation = -24631.874715 eV Core-core repulsion = 20840.639610 eV Total energy + Delta-G solvation = -3791.235105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.68089 -39.19002 -38.33949 -36.61686 -34.38632 -33.14198 -32.42142 -31.41039 -29.79792 -28.25495 -27.71226 -26.87493 -25.48366 -24.59788 -22.43639 -22.28289 -20.92030 -20.33256 -18.39188 -17.85626 -17.03017 -16.46503 -16.26636 -16.18389 -15.94730 -15.51777 -14.98990 -14.80406 -14.79419 -14.67282 -14.25765 -13.91202 -13.71715 -13.67302 -13.61022 -13.20943 -13.02510 -12.56151 -12.47066 -12.41726 -12.33055 -12.10189 -11.83528 -11.49142 -11.45641 -11.37058 -11.16461 -11.06502 -11.01199 -10.75127 -9.79970 -9.41251 -9.17479 -9.07152 -8.88356 -8.85951 -8.40674 -8.22011 -6.49048 -6.21093 -3.91493 0.96137 0.99999 2.85409 2.97360 3.11822 3.22016 3.24067 3.30199 3.35597 3.66453 4.19288 4.20968 4.32828 4.38383 4.46925 4.60186 4.68444 4.69602 4.83151 4.91699 4.93152 4.98609 5.06392 5.14187 5.19640 5.21275 5.24197 5.25345 5.34283 5.36248 5.55168 5.62628 5.78208 5.84169 5.90695 5.92225 5.94272 6.02560 6.14695 6.25063 6.40196 6.53000 6.65088 6.97059 6.97862 7.60552 7.71016 8.36128 8.62870 9.24351 10.86419 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.035458 B = 0.001335 C = 0.001330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.482126 B =20969.079586 C =21041.423551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.125 3.875 4 C -0.205 4.205 5 C -0.079 4.079 6 C -0.116 4.116 7 C 0.105 3.895 8 N -0.681 5.681 9 C 0.049 3.951 10 C 0.123 3.877 11 N -0.739 5.739 12 C 0.532 3.468 13 O -0.516 6.516 14 C -0.153 4.153 15 S -0.061 6.061 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.059 4.059 25 C -0.117 4.117 26 C -0.105 4.105 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.345 0.655 35 H 0.036 0.964 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.268 0.732 43 H 0.131 0.869 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.634 -23.583 22.710 35.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.080 3.920 4 C -0.223 4.223 5 C -0.098 4.098 6 C -0.117 4.117 7 C -0.024 4.024 8 N -0.313 5.313 9 C -0.080 4.080 10 C -0.002 4.002 11 N -0.394 5.394 12 C 0.318 3.682 13 O -0.390 6.390 14 C -0.304 4.304 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.077 4.077 25 C -0.118 4.118 26 C -0.162 4.162 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.164 0.836 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.149 0.851 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.435 -25.047 20.709 35.167 hybrid contribution -0.153 2.710 2.009 3.377 sum -13.587 -22.337 22.718 34.637 Atomic orbital electron populations 1.23060 0.78428 1.03953 1.01373 1.86060 1.21270 1.26900 1.88666 1.18865 0.91864 0.84182 0.97134 1.21166 0.99923 0.92254 1.08987 1.20814 0.93944 0.97038 0.97967 1.19620 0.93187 0.94915 1.03982 1.20797 0.99735 0.92205 0.89644 1.60363 1.29894 1.27907 1.13140 1.22114 0.99807 0.89530 0.96575 1.21135 0.98285 0.85155 0.95616 1.45898 1.63398 1.21320 1.08819 1.20297 0.78192 0.86788 0.82945 1.90712 1.51648 1.63977 1.32672 1.23528 1.02581 0.95781 1.08476 1.85419 1.77710 1.23554 0.96727 1.22912 1.44871 1.05036 0.95529 0.90874 1.24993 0.95587 0.98571 0.94433 1.70033 1.44582 1.37843 0.97815 0.86115 0.78970 0.82002 0.78392 1.19625 1.20563 1.20578 1.20780 0.99936 0.90244 0.96767 1.19286 0.90574 0.96298 1.05657 1.20610 0.98916 0.94441 1.02216 0.92699 0.92595 0.88236 0.85520 0.86031 0.90001 0.94293 0.83634 0.94529 0.90186 0.90633 0.91841 0.76916 0.89243 0.89179 0.92238 0.85121 0.91476 0.91228 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.56 9.54 -19.43 -0.19 -2.75 16 3 C 0.12 1.09 6.66 -39.22 -0.26 0.83 16 4 C -0.20 -1.55 9.04 -39.43 -0.36 -1.91 16 5 C -0.08 -0.59 9.69 -39.60 -0.38 -0.97 16 6 C -0.12 -0.91 5.39 -104.60 -0.56 -1.48 16 7 C 0.10 0.73 5.81 -4.97 -0.03 0.71 16 8 N -0.68 -5.60 6.49 -115.05 -0.75 -6.34 16 9 C 0.05 0.41 5.80 -3.82 -0.02 0.38 16 10 C 0.12 1.44 5.93 -4.04 -0.02 1.41 16 11 N -0.74 -9.79 5.56 -60.29 -0.33 -10.13 16 12 C 0.53 10.02 7.85 -10.99 -0.09 9.94 16 13 O -0.52 -11.95 15.86 5.55 0.09 -11.87 16 14 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 16 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 17 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 20 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.06 -0.48 9.35 -39.61 -0.37 -0.85 16 25 C -0.12 -1.01 5.89 -104.47 -0.62 -1.63 16 26 C -0.11 -0.74 9.79 36.01 0.35 -0.39 16 27 H 0.05 0.20 7.66 -51.93 -0.40 -0.20 16 28 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.13 0.71 6.30 -52.49 -0.33 0.38 16 31 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 34 H 0.35 2.77 8.72 -39.29 -0.34 2.43 16 35 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.40 3.98 8.47 -40.82 -0.35 3.63 16 40 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 41 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 43 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.51 7.53 -51.93 -0.39 0.12 16 46 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 LS Contribution 402.26 15.07 6.06 6.06 Total: -1.00 -35.72 402.26 -9.80 -45.53 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.24 Total: 1.20 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -0.95 Total: -8.72 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: -0.35 Total: -42.00 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.10 Total: -14.61 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.72 -9.80 -45.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799361.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.219 kcal (2) G-P(sol) polarization free energy of solvation -35.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds