Wall clock time and date at job start Tue Mar 31 2020 20:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35902 * 116.99750 * 2 1 4 4 C 1.38751 * 120.05989 * 0.02562 * 3 2 1 5 5 C 1.38116 * 119.94676 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05712 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94583 * 180.02562 * 6 5 4 8 8 C 1.38247 * 120.10976 * 359.74991 * 6 5 4 9 9 C 1.38166 * 120.05306 * 0.50385 * 8 6 5 10 10 C 1.50699 * 120.02559 * 179.77023 * 9 8 6 11 11 N 1.46906 * 109.46990 * 259.72686 * 10 9 8 12 12 C 1.46902 * 110.99573 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.46622 * 179.97438 * 12 11 10 14 14 N 1.46502 * 109.46710 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99465 * 180.02562 * 14 13 12 16 16 O 1.21271 * 120.00509 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99309 * 179.97438 * 15 14 13 18 18 S 1.81009 * 109.46635 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99638 * 180.02562 * 18 17 15 20 20 H 1.07993 * 120.00478 * 359.97438 * 19 18 17 21 21 C 1.38803 * 119.99715 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00034 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99993 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46765 * 90.00046 * 23 21 19 25 25 H 1.48500 * 109.47062 * 210.00028 * 23 21 19 26 26 H 1.48497 * 109.47053 * 330.00183 * 23 21 19 27 27 H 1.09001 * 109.46993 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47202 * 300.00000 * 1 2 3 29 29 H 1.09001 * 109.47115 * 59.99838 * 1 2 3 30 30 H 1.08009 * 120.02454 * 359.97438 * 4 3 2 31 31 H 1.08003 * 119.97023 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.47640 * 89.99410 * 7 6 5 33 33 H 1.09002 * 109.47231 * 210.00009 * 7 6 5 34 34 H 1.09009 * 109.46948 * 329.99367 * 7 6 5 35 35 H 1.07994 * 119.97303 * 180.25482 * 8 6 5 36 36 H 1.09002 * 109.47064 * 139.72962 * 10 9 8 37 37 H 1.09000 * 109.47099 * 19.72688 * 10 9 8 38 38 H 1.00896 * 111.00309 * 56.04484 * 11 10 9 39 39 H 1.08990 * 109.47358 * 299.99539 * 12 11 10 40 40 H 1.09004 * 109.47457 * 60.00221 * 12 11 10 41 41 H 1.09006 * 109.47203 * 299.99590 * 13 12 11 42 42 H 1.08995 * 109.47152 * 60.00028 * 13 12 11 43 43 H 0.96992 * 120.00225 * 359.97438 * 14 13 12 44 44 H 1.08990 * 109.47400 * 299.99401 * 17 15 14 45 45 H 1.08995 * 109.47361 * 59.99987 * 17 15 14 46 46 H 0.96995 * 120.00296 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 6 4.0560 2.5171 0.0068 9 6 3.4311 1.2849 0.0010 10 6 4.2538 0.0222 0.0015 11 7 4.3201 -0.5195 -1.3624 12 6 5.1155 -1.7539 -1.4004 13 6 5.1611 -2.2873 -2.8338 14 7 5.9538 -3.5187 -2.8716 15 6 6.1325 -4.1695 -4.0382 16 8 5.6366 -3.7361 -5.0565 17 6 6.9485 -5.4360 -4.0771 18 16 7.0022 -6.0670 -5.7728 19 6 7.9890 -7.5068 -5.5322 20 1 8.3559 -7.7515 -4.5464 21 6 8.2956 -8.3260 -6.6099 22 7 9.0332 -9.4014 -6.4303 23 14 7.6616 -7.9024 -8.3152 24 1 8.6494 -7.0381 -9.0099 25 1 7.4627 -9.1513 -9.0937 26 1 6.3689 -7.1812 -8.1977 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2127 2.3204 0.0005 31 1 1.3339 4.5114 0.0019 32 1 4.1506 5.3417 1.0307 33 1 4.9442 4.9386 -0.5108 34 1 3.3582 5.7467 -0.5109 35 1 5.1344 2.5752 0.0114 36 1 3.7922 -0.7119 0.6619 37 1 5.2611 0.2450 0.3533 38 1 4.6849 0.1661 -2.0065 39 1 6.1288 -1.5439 -1.0582 40 1 4.6596 -2.5002 -0.7498 41 1 4.1476 -2.4975 -3.1757 42 1 5.6168 -1.5412 -3.4848 43 1 6.3507 -3.8652 -2.0572 44 1 7.9617 -5.2260 -3.7350 45 1 6.4926 -6.1821 -3.4264 46 1 9.2472 -9.9740 -7.1833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799511.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:09 Heat of formation + Delta-G solvation = -56.359682 kcal Electronic energy + Delta-G solvation = -25101.951354 eV Core-core repulsion = 21310.776411 eV Total energy + Delta-G solvation = -3791.174943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.65730 -39.26082 -38.06108 -36.89156 -34.53555 -32.55011 -32.42014 -31.81477 -30.01186 -28.23137 -27.90644 -26.26946 -25.60916 -24.94270 -22.32295 -22.28208 -20.97056 -20.41518 -18.36641 -17.85599 -16.97334 -16.44603 -16.24209 -16.01528 -15.95071 -15.50343 -15.08156 -14.95911 -14.72824 -14.59645 -14.22712 -14.17656 -13.99570 -13.66984 -13.41205 -13.14903 -12.94190 -12.77638 -12.59114 -12.49420 -12.22639 -12.16160 -11.79861 -11.70214 -11.44373 -11.24825 -11.20530 -11.07102 -10.99037 -10.58449 -9.84188 -9.52071 -9.31538 -8.99892 -8.92728 -8.73453 -8.47853 -8.34576 -6.89737 -6.27332 -3.98854 0.89300 1.05178 2.76609 2.98044 3.01737 3.19707 3.34288 3.38052 3.52641 3.64766 4.16505 4.32185 4.35069 4.38690 4.51115 4.65540 4.69675 4.78777 4.81234 4.85427 4.88656 4.91323 5.02629 5.11788 5.14219 5.18350 5.21577 5.25781 5.27554 5.34663 5.36697 5.52983 5.69874 5.75065 5.82998 5.89507 5.92294 6.01560 6.03806 6.20752 6.41500 6.51441 6.65699 7.04641 7.08000 7.63929 7.95738 8.43231 8.52864 9.18959 10.81881 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024119 B = 0.001580 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.614656 B =17721.791698 C =18065.010529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.301 6.301 3 C 0.148 3.852 4 C -0.209 4.209 5 C -0.078 4.078 6 C -0.128 4.128 7 C -0.109 4.109 8 C -0.075 4.075 9 C -0.117 4.117 10 C 0.112 3.888 11 N -0.677 5.677 12 C 0.051 3.949 13 C 0.124 3.876 14 N -0.737 5.737 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.126 0.874 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.343 0.657 39 H 0.036 0.964 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.399 0.601 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.490 27.670 19.458 36.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.214 6.214 3 C 0.102 3.898 4 C -0.228 4.228 5 C -0.097 4.097 6 C -0.128 4.128 7 C -0.166 4.166 8 C -0.094 4.094 9 C -0.118 4.118 10 C -0.016 4.016 11 N -0.308 5.308 12 C -0.079 4.079 13 C -0.001 4.001 14 N -0.392 5.392 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.274 4.274 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.119 0.881 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.144 0.856 36 H 0.102 0.898 37 H 0.056 0.944 38 H 0.161 0.839 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.233 0.767 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.756 27.689 17.725 36.457 hybrid contribution 1.242 -0.215 0.949 1.578 sum -14.514 27.474 18.675 36.252 Atomic orbital electron populations 1.23066 0.78660 1.04093 1.01031 1.86176 1.20923 1.26286 1.87965 1.18794 0.91657 0.84319 0.95019 1.21239 1.00070 0.92350 1.09158 1.20821 0.93940 0.97019 0.97890 1.19774 0.93627 0.95460 1.03938 1.20714 1.00343 0.93422 1.02101 1.20796 0.99584 0.90656 0.98315 1.19080 0.90799 0.95077 1.06833 1.20640 0.96808 0.93395 0.90784 1.60294 1.56181 1.06972 1.07356 1.22087 0.95784 0.93058 0.96946 1.21146 0.96775 0.86345 0.95822 1.45859 1.55537 1.26933 1.10827 1.20256 0.80319 0.84905 0.82858 1.90702 1.48364 1.67089 1.33150 1.23277 1.02294 0.96851 1.05014 1.84798 1.69950 1.31255 1.05571 1.22326 1.36293 1.08780 0.99518 0.89389 1.24713 0.93706 0.93791 0.99087 1.69937 1.35969 1.13559 1.32263 0.86734 0.82072 0.79051 0.83997 1.19216 1.19946 1.15897 0.88146 0.92964 0.92671 0.85458 0.85940 0.91487 0.91632 0.91716 0.85589 0.89755 0.94404 0.83898 0.94601 0.90183 0.90635 0.91836 0.76748 0.88518 0.88421 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.30 -2.84 9.73 -19.43 -0.19 -3.03 16 3 C 0.15 1.36 6.66 -39.22 -0.26 1.10 16 4 C -0.21 -1.61 9.04 -39.44 -0.36 -1.97 16 5 C -0.08 -0.55 9.69 -39.61 -0.38 -0.94 16 6 C -0.13 -0.90 5.88 -104.60 -0.62 -1.52 16 7 C -0.11 -0.54 10.01 36.00 0.36 -0.17 16 8 C -0.07 -0.56 9.32 -39.60 -0.37 -0.93 16 9 C -0.12 -1.01 5.41 -104.47 -0.56 -1.57 16 10 C 0.11 0.92 5.48 -4.97 -0.03 0.89 16 11 N -0.68 -6.08 6.49 -115.05 -0.75 -6.83 16 12 C 0.05 0.44 5.80 -3.82 -0.02 0.42 16 13 C 0.12 1.45 5.94 -4.04 -0.02 1.42 16 14 N -0.74 -9.55 5.56 -60.29 -0.33 -9.88 16 15 C 0.53 9.63 7.85 -10.98 -0.09 9.55 16 16 O -0.52 -11.52 15.86 5.57 0.09 -11.43 16 17 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 18 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 19 C -0.52 -15.16 10.04 30.94 0.31 -14.84 16 20 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 21 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.71 13.97 55.49 0.78 -25.94 16 23 Si 0.86 21.97 27.74 -169.99 -4.71 17.26 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.13 0.74 6.30 -52.48 -0.33 0.41 16 31 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.29 8.09 -51.93 -0.42 -0.13 16 34 H 0.06 0.27 8.09 -51.92 -0.42 -0.15 16 35 H 0.13 0.73 8.03 -52.49 -0.42 0.31 16 36 H 0.08 0.74 7.85 -51.93 -0.41 0.34 16 37 H 0.04 0.26 8.00 -51.93 -0.42 -0.15 16 38 H 0.34 2.93 8.72 -39.29 -0.34 2.59 16 39 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.40 3.93 8.47 -40.82 -0.35 3.58 16 44 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 45 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 46 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 399.84 15.07 6.03 6.03 Total: -1.00 -35.53 399.84 -9.29 -44.83 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.28 Total: 1.53 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -0.92 Total: -6.89 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: -0.31 Total: -42.65 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.10 Total: -14.46 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.26 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.53 -9.29 -44.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799511.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.534 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds