Wall clock time and date at job start Tue Mar 31 2020 20:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38268 * 119.94321 * 2 1 4 4 C 1.38139 * 120.05510 * 179.97438 * 3 2 1 5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5 9 9 N 1.46902 * 109.47322 * 64.99852 * 8 7 6 10 10 C 1.46895 * 110.99846 * 180.02562 * 9 8 7 11 11 C 1.53007 * 109.46943 * 180.02562 * 10 9 8 12 12 N 1.46500 * 109.46857 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99359 * 180.02562 * 12 11 10 14 14 O 1.21277 * 120.00436 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99692 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.47297 * 180.02562 * 15 13 12 17 17 C 1.76196 * 100.00297 * 179.97438 * 16 15 13 18 18 H 1.08006 * 119.99815 * 359.97438 * 17 16 15 19 19 C 1.38788 * 120.00211 * 180.02562 * 17 16 15 20 20 N 1.31637 * 120.00006 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00271 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47081 * 89.99700 * 21 19 17 23 23 H 1.48502 * 109.47267 * 210.00025 * 21 19 17 24 24 H 1.48504 * 109.46816 * 330.00007 * 21 19 17 25 25 C 1.38723 * 119.88799 * 0.25807 * 5 4 3 26 26 C 1.38145 * 119.94323 * 359.49123 * 25 5 4 27 27 H 1.08999 * 109.46991 * 90.00243 * 1 2 3 28 28 H 1.09001 * 109.46891 * 210.00393 * 1 2 3 29 29 H 1.08994 * 109.47121 * 330.00356 * 1 2 3 30 30 H 1.08008 * 119.97007 * 359.94743 * 3 2 1 31 31 H 1.08001 * 120.02451 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47144 * 300.00205 * 7 6 5 33 33 H 1.08998 * 109.47043 * 59.99803 * 7 6 5 34 34 H 1.08998 * 109.47363 * 184.99948 * 8 7 6 35 35 H 1.09000 * 109.46903 * 305.00059 * 8 7 6 36 36 H 1.00896 * 110.99738 * 56.04480 * 9 8 7 37 37 H 1.08997 * 109.47673 * 300.00131 * 10 9 8 38 38 H 1.09004 * 109.47143 * 60.00332 * 10 9 8 39 39 H 1.09005 * 109.46624 * 299.99982 * 11 10 9 40 40 H 1.08996 * 109.46638 * 60.00193 * 11 10 9 41 41 H 0.96996 * 120.00645 * 359.97438 * 12 11 10 42 42 H 1.09006 * 109.47149 * 299.99946 * 15 13 12 43 43 H 1.08998 * 109.47192 * 59.99588 * 15 13 12 44 44 H 0.97000 * 119.99719 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.02769 * 179.72249 * 25 5 4 46 46 H 1.08006 * 119.97076 * 180.25587 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0001 0.0016 7 6 6.2813 -1.2731 0.0022 8 6 7.7981 -1.0726 0.0027 9 7 8.2063 -0.4278 1.2580 10 6 9.6599 -0.2185 1.2937 11 6 10.0461 0.4530 2.6132 12 7 11.4957 0.6623 2.6485 13 6 12.0666 1.2424 3.7227 14 8 11.3806 1.5907 4.6602 15 6 13.5577 1.4584 3.7589 16 16 14.0149 2.2511 5.3205 17 6 15.7582 2.3794 5.0997 18 1 16.2159 2.0144 4.1921 19 6 16.5434 2.9486 6.0926 20 7 15.9857 3.3930 7.1990 21 14 18.3919 3.0840 5.8588 22 1 18.7148 4.3787 5.2071 23 1 19.0645 3.0139 7.1809 24 1 18.8656 1.9670 5.0025 25 6 3.5787 -1.2007 -0.0033 26 6 2.1973 -1.1980 0.0014 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5137 30 1 1.6558 2.1327 -0.0009 31 1 4.1172 2.1370 0.0001 32 1 5.9884 -1.8297 0.8924 33 1 5.9884 -1.8305 -0.8875 34 1 8.2925 -2.0399 -0.0864 35 1 8.0813 -0.4408 -0.8391 36 1 7.8980 -0.9625 2.0561 37 1 10.1676 -1.1796 1.2133 38 1 9.9556 0.4195 0.4608 39 1 9.5384 1.4142 2.6939 40 1 9.7504 -0.1853 3.4457 41 1 12.0445 0.3828 1.8992 42 1 14.0661 0.4976 3.6771 43 1 13.8526 2.0974 2.9266 44 1 16.5345 3.7911 7.8927 45 1 4.1174 -2.1367 -0.0070 46 1 1.6559 -2.1326 0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799559.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:13 Heat of formation + Delta-G solvation = -57.129112 kcal Electronic energy + Delta-G solvation = -24373.834221 eV Core-core repulsion = 20582.625913 eV Total energy + Delta-G solvation = -3791.208308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.49614 -39.19004 -38.26911 -36.80162 -34.37726 -32.44568 -32.41660 -31.43748 -30.89025 -29.27406 -27.01923 -26.33612 -25.44681 -23.73083 -22.39331 -22.23098 -21.35949 -20.34787 -18.67722 -17.85450 -16.79519 -16.58870 -16.18709 -16.03930 -15.81959 -15.65970 -15.08323 -14.86122 -14.79623 -14.48242 -14.28312 -14.02235 -13.85114 -13.72313 -13.55191 -13.49466 -13.08251 -12.58483 -12.51310 -12.42909 -12.17236 -11.91507 -11.88781 -11.68374 -11.45950 -11.12151 -11.07528 -11.05592 -11.01553 -10.75473 -9.80886 -9.40947 -9.36870 -9.06222 -8.88609 -8.85974 -8.36924 -8.22349 -6.48925 -6.20709 -3.91305 0.97706 1.07219 2.82891 2.96621 3.11798 3.23003 3.26706 3.30896 3.39091 3.55920 4.02719 4.21258 4.30903 4.47323 4.48654 4.55604 4.57724 4.70779 4.77006 4.86684 4.90638 4.97328 4.98543 5.14431 5.18201 5.20171 5.23353 5.23537 5.33500 5.35314 5.53687 5.62436 5.68553 5.77756 5.90183 5.92681 5.94025 6.00120 6.14585 6.24995 6.41845 6.47853 6.63097 6.91413 7.12127 7.60288 7.70672 8.36022 8.62747 9.24545 10.86747 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032188 B = 0.001291 C = 0.001259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.680733 B =21686.865962 C =22234.651970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.130 4.130 3 C -0.081 4.081 4 C -0.147 4.147 5 C 0.128 3.872 6 O -0.297 6.297 7 C 0.063 3.937 8 C 0.061 3.939 9 N -0.680 5.680 10 C 0.050 3.950 11 C 0.123 3.877 12 N -0.739 5.739 13 C 0.532 3.468 14 O -0.516 6.516 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.209 4.209 26 C -0.082 4.082 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.344 0.656 37 H 0.036 0.964 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.268 0.732 45 H 0.125 0.875 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.938 -12.600 -20.247 35.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.130 4.130 3 C -0.099 4.099 4 C -0.166 4.166 5 C 0.083 3.917 6 O -0.210 6.210 7 C -0.013 4.013 8 C -0.068 4.068 9 N -0.312 5.312 10 C -0.079 4.079 11 C -0.002 4.002 12 N -0.395 5.395 13 C 0.318 3.682 14 O -0.390 6.390 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.228 4.228 26 C -0.100 4.100 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.163 0.837 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.143 0.857 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -28.063 -11.140 -18.717 35.524 hybrid contribution 2.548 -1.676 -1.460 3.381 sum -25.515 -12.815 -20.177 34.962 Atomic orbital electron populations 1.20718 0.91145 1.02657 1.02081 1.19827 0.96209 0.93077 1.03910 1.20877 0.93049 0.97808 0.98142 1.20480 0.93735 0.96589 1.05798 1.19066 0.82737 0.94063 0.95872 1.86215 1.15643 1.31012 1.88105 1.22837 0.92561 0.84558 1.01360 1.22001 0.92365 0.98334 0.94113 1.60238 1.12777 1.54063 1.04132 1.22102 0.87830 0.99449 0.98535 1.21133 0.81209 1.01527 0.96324 1.45896 1.07799 1.64575 1.21184 1.20297 0.89980 0.76373 0.81568 1.90710 1.64316 1.48636 1.35296 1.23531 0.93669 1.05300 1.07887 1.85415 1.06938 1.76574 1.14412 1.22871 0.92074 1.46720 1.06762 0.90936 1.24987 0.99490 0.94632 0.94430 1.70023 1.36092 1.37645 1.06529 0.86171 0.82974 0.78633 0.77733 1.20258 1.20745 1.19714 1.21229 0.95377 0.97018 1.09162 1.20815 0.93321 0.97662 0.98193 0.91501 0.91778 0.91635 0.85427 0.85025 0.91952 0.91485 0.92822 0.89509 0.83741 0.94551 0.90142 0.90572 0.91829 0.76932 0.89248 0.89176 0.92181 0.85677 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.01 36.01 0.36 -0.17 16 2 C -0.13 -0.94 5.88 -104.60 -0.62 -1.55 16 3 C -0.08 -0.61 9.69 -39.61 -0.38 -1.00 16 4 C -0.15 -1.32 9.99 -39.44 -0.39 -1.71 16 5 C 0.13 1.19 6.69 -39.22 -0.26 0.93 16 6 O -0.30 -2.84 10.08 -19.44 -0.20 -3.03 16 7 C 0.06 0.39 5.02 37.16 0.19 0.58 16 8 C 0.06 0.38 6.07 -3.82 -0.02 0.35 16 9 N -0.68 -5.51 6.45 -113.78 -0.73 -6.24 16 10 C 0.05 0.42 5.80 -3.82 -0.02 0.39 16 11 C 0.12 1.45 5.93 -4.04 -0.02 1.43 16 12 N -0.74 -9.85 5.56 -60.29 -0.33 -10.19 16 13 C 0.53 10.06 7.85 -10.98 -0.09 9.98 16 14 O -0.52 -11.98 15.86 5.56 0.09 -11.89 16 15 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 18 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 21 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.21 -1.62 9.04 -39.44 -0.36 -1.97 16 26 C -0.08 -0.59 9.69 -39.61 -0.38 -0.97 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.26 8.08 -51.93 -0.42 -0.16 16 29 H 0.06 0.28 8.08 -51.93 -0.42 -0.14 16 30 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 31 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.06 0.34 7.67 -51.93 -0.40 -0.05 16 33 H 0.07 0.31 7.65 -51.93 -0.40 -0.08 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.34 2.55 8.73 -39.29 -0.34 2.20 16 37 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.40 4.00 8.47 -40.82 -0.35 3.65 16 42 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 43 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.13 0.73 6.30 -52.49 -0.33 0.40 16 46 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 LS Contribution 403.99 15.07 6.09 6.09 Total: -1.00 -36.09 403.99 -10.45 -46.54 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.27 Total: 1.35 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -1.58 Total: -9.63 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -0.34 Total: -41.99 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.11 Total: -14.93 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.09 -10.45 -46.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799559.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.589 kcal (2) G-P(sol) polarization free energy of solvation -36.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds