Wall clock time and date at job start Tue Mar 31 2020 22:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.33390 * 125.19724 * 2 1 4 4 C 1.38423 * 114.91680 * 179.97438 * 3 2 1 5 5 C 1.50704 * 122.53936 * 179.97438 * 4 3 2 6 6 C 1.33391 * 114.92341 * 359.97438 * 4 3 2 7 7 C 1.50703 * 125.20419 * 179.97438 * 6 4 3 8 8 C 1.50705 * 109.46793 * 90.00459 * 7 6 4 9 9 O 1.21283 * 119.99937 * 359.97438 * 8 7 6 10 10 N 1.34770 * 119.99787 * 180.02562 * 8 7 6 11 11 C 1.47156 * 120.98466 * 359.97438 * 10 8 7 12 12 C 1.53296 * 108.38233 * 230.26449 * 11 10 8 13 13 O 1.42957 * 109.22402 * 307.69209 * 12 11 10 14 14 C 1.42962 * 114.16142 * 62.58700 * 13 12 11 15 15 H 1.09001 * 109.51757 * 57.34281 * 14 13 12 16 16 C 1.53000 * 109.50919 * 177.49389 * 14 13 12 17 17 N 1.46500 * 109.47044 * 299.99567 * 16 14 13 18 18 C 1.36944 * 120.00202 * 179.97438 * 17 16 14 19 19 H 1.08006 * 119.99596 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00113 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99572 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00064 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47159 * 90.00027 * 22 20 18 24 24 H 1.48497 * 109.46966 * 209.99632 * 22 20 18 25 25 H 1.48499 * 109.46984 * 329.99875 * 22 20 18 26 26 C 1.47151 * 120.98286 * 179.71529 * 10 8 7 27 27 S 1.75878 * 125.20395 * 180.23949 * 2 1 3 28 28 H 1.09002 * 109.46871 * 90.00602 * 1 2 3 29 29 H 1.09001 * 109.46520 * 209.99748 * 1 2 3 30 30 H 1.08997 * 109.47380 * 329.99729 * 1 2 3 31 31 H 1.07991 * 122.54215 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.46805 * 270.02282 * 5 4 3 33 33 H 1.09002 * 109.46882 * 30.02360 * 5 4 3 34 34 H 1.08999 * 109.47037 * 150.02507 * 5 4 3 35 35 H 1.09002 * 109.47329 * 330.00388 * 7 6 4 36 36 H 1.09001 * 109.46635 * 209.99860 * 7 6 4 37 37 H 1.09002 * 109.67563 * 349.98862 * 11 10 8 38 38 H 1.08998 * 109.67968 * 110.50341 * 11 10 8 39 39 H 1.09004 * 109.51110 * 67.62426 * 12 11 10 40 40 H 1.08999 * 109.50768 * 187.71716 * 12 11 10 41 41 H 1.08999 * 109.47479 * 59.99627 * 16 14 13 42 42 H 1.09003 * 109.47110 * 179.97438 * 16 14 13 43 43 H 0.97000 * 120.00243 * 0.02562 * 17 16 14 44 44 H 0.97002 * 119.99527 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.68184 * 249.46000 * 26 10 8 46 46 H 1.09003 * 109.67897 * 10.00956 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8430 0.0006 5 6 4.6623 1.9484 0.0001 6 6 3.9752 -0.4476 0.0016 7 6 5.3862 -0.9769 0.0018 8 6 5.8566 -1.1522 1.4227 9 8 5.1189 -0.8743 2.3444 10 7 7.0974 -1.6169 1.6692 11 6 8.0105 -1.9603 0.5675 12 6 8.5701 -3.3643 0.8232 13 8 9.1181 -3.4196 2.1424 14 6 8.1619 -3.2025 3.1828 15 1 7.3596 -3.9355 3.0987 16 6 8.8461 -3.3461 4.5437 17 7 9.4058 -4.6942 4.6691 18 6 10.0702 -5.0563 5.8105 19 1 10.1819 -4.3479 6.6181 20 6 10.6010 -6.3334 5.9290 21 7 11.2391 -6.6816 7.0264 22 14 10.4096 -7.5579 4.5314 23 1 11.5623 -7.4340 3.6035 24 1 10.3643 -8.9358 5.0833 25 1 9.1501 -7.2773 3.7965 26 6 7.5812 -1.7906 3.0480 27 16 2.5210 -1.4371 -0.0060 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.8668 2.0895 -0.0004 32 1 4.9092 2.2144 -1.0277 33 1 4.2564 2.8200 0.5136 34 1 5.5620 1.6102 0.5140 35 1 6.0389 -0.2716 -0.5127 36 1 5.4136 -1.9382 -0.5113 37 1 7.4668 -1.9481 -0.3772 38 1 8.8277 -1.2399 0.5300 39 1 7.7692 -4.0979 0.7304 40 1 9.3506 -3.5834 0.0944 41 1 9.6467 -2.6111 4.6273 42 1 8.1167 -3.1800 5.3364 43 1 9.3065 -5.3300 3.9433 44 1 11.6097 -7.5742 7.1094 45 1 8.3555 -1.0536 3.2610 46 1 6.7533 -1.6661 3.7460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502090468.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:58 Heat of formation + Delta-G solvation = -31.218280 kcal Electronic energy + Delta-G solvation = -26867.155702 eV Core-core repulsion = 23077.070972 eV Total energy + Delta-G solvation = -3790.084730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.58290 -38.99859 -38.13532 -35.22705 -34.53498 -33.76241 -32.31096 -31.00227 -30.36244 -28.61752 -28.25961 -26.27011 -24.64939 -23.56201 -22.17441 -21.84565 -21.02201 -19.59973 -18.43014 -17.77893 -17.52130 -17.30671 -16.56969 -15.98221 -15.72025 -15.16755 -15.10245 -14.71955 -14.49731 -14.34028 -13.95207 -13.93825 -13.55192 -13.45604 -13.18743 -13.10877 -12.98746 -12.80568 -12.58574 -12.45914 -12.23489 -11.90484 -11.82164 -11.71845 -11.65351 -11.24500 -11.09886 -10.89948 -10.83726 -10.53760 -10.18057 -10.03577 -9.95882 -9.55893 -8.87948 -8.69840 -8.66725 -8.46646 -7.19863 -5.73346 -3.08447 0.71320 1.37292 1.76298 2.37279 2.40515 2.74322 3.41477 3.45674 3.48364 3.77529 4.22854 4.33876 4.48363 4.55875 4.63582 4.67784 4.75545 4.89186 4.92018 4.97623 5.00755 5.08222 5.15323 5.16119 5.18310 5.28896 5.34299 5.38120 5.51201 5.51835 5.55875 5.56692 5.68344 5.72756 5.78779 5.89937 5.93543 6.13834 6.20494 6.31671 6.46033 6.59032 7.12001 7.28279 7.94066 8.02067 8.45407 9.24776 9.97070 10.17461 11.44959 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021059 B = 0.002301 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.300229 B =12164.346035 C =12452.689179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.178 4.178 3 C -0.136 4.136 4 C -0.089 4.089 5 C -0.094 4.094 6 C -0.168 4.168 7 C -0.067 4.067 8 C 0.516 3.484 9 O -0.523 6.523 10 N -0.616 5.616 11 C 0.071 3.929 12 C 0.044 3.956 13 O -0.360 6.360 14 C 0.070 3.930 15 H 0.062 0.938 16 C 0.168 3.832 17 N -0.750 5.750 18 C -0.243 4.243 19 H 0.091 0.909 20 C 0.004 3.996 21 N -0.934 5.934 22 Si 0.888 3.112 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.278 1.278 26 C 0.087 3.913 27 S 0.107 5.893 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.106 0.894 41 H 0.037 0.963 42 H 0.044 0.956 43 H 0.365 0.635 44 H 0.259 0.741 45 H 0.080 0.920 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.852 16.938 -22.591 33.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.295 4.295 3 C -0.166 4.166 4 C -0.101 4.101 5 C -0.153 4.153 6 C -0.285 4.285 7 C -0.109 4.109 8 C 0.303 3.697 9 O -0.398 6.398 10 N -0.351 5.351 11 C -0.052 4.052 12 C -0.034 4.034 13 O -0.278 6.278 14 C 0.011 3.989 15 H 0.080 0.920 16 C 0.040 3.960 17 N -0.396 5.396 18 C -0.373 4.373 19 H 0.108 0.892 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.718 3.282 23 H -0.210 1.210 24 H -0.219 1.219 25 H -0.205 1.205 26 C -0.036 4.036 27 S 0.373 5.627 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.155 0.845 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.124 0.876 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.198 0.802 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.273 15.482 -21.822 32.401 hybrid contribution 0.050 0.518 -1.038 1.161 sum -18.222 16.000 -22.860 33.327 Atomic orbital electron populations 1.20334 0.87836 1.03255 1.02623 1.24419 0.99888 0.95810 1.09399 1.19873 0.92226 0.99186 1.05288 1.18712 0.94824 0.93929 1.02642 1.20510 0.96926 0.95971 1.01901 1.23470 0.97042 0.96053 1.11939 1.20150 0.92093 1.03352 0.95295 1.20470 0.80908 0.77112 0.91243 1.90740 1.53724 1.49325 1.46034 1.48171 1.13745 1.65506 1.07656 1.22530 0.94179 0.98557 0.89983 1.22936 0.99388 0.94483 0.86621 1.88146 1.34418 1.92175 1.13070 1.22860 0.91856 0.94437 0.89760 0.91955 1.20606 0.96069 0.89202 0.90099 1.42547 1.68070 1.09962 1.18980 1.19055 1.26692 0.97801 0.93711 0.89159 1.24661 1.00177 0.97287 0.97080 1.69711 1.41982 1.20045 1.26517 0.86490 0.77850 0.81312 0.82532 1.21012 1.21851 1.20473 1.22309 1.00591 0.97839 0.82865 1.84195 0.96113 1.09142 1.73208 0.90790 0.91277 0.90524 0.84496 0.91245 0.91338 0.91812 0.87074 0.87953 0.89124 0.90045 0.92887 0.87626 0.94464 0.93802 0.80229 0.93093 0.90201 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.38 36.01 0.37 -0.16 16 2 C -0.18 -1.66 6.51 -36.00 -0.23 -1.90 16 3 C -0.14 -1.27 9.85 -41.21 -0.41 -1.68 16 4 C -0.09 -0.89 5.80 -106.25 -0.62 -1.50 16 5 C -0.09 -0.74 9.60 36.01 0.35 -0.39 16 6 C -0.17 -1.75 5.00 -36.00 -0.18 -1.93 16 7 C -0.07 -0.59 3.94 -29.03 -0.11 -0.70 16 8 C 0.52 6.33 7.70 -10.99 -0.08 6.25 16 9 O -0.52 -8.51 15.50 5.56 0.09 -8.42 16 10 N -0.62 -7.15 3.02 -172.29 -0.52 -7.67 16 11 C 0.07 0.61 6.54 -3.53 -0.02 0.58 16 12 C 0.04 0.47 6.98 37.31 0.26 0.73 16 13 O -0.36 -5.74 10.13 -35.23 -0.36 -6.10 16 14 C 0.07 1.12 2.87 -26.60 -0.08 1.04 16 15 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 16 C 0.17 3.32 5.96 -4.04 -0.02 3.29 16 17 N -0.75 -18.51 5.30 -59.90 -0.32 -18.82 16 18 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 19 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 20 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 21 N -0.93 -29.85 13.97 55.49 0.78 -29.08 16 22 Si 0.89 22.77 27.74 -169.99 -4.71 18.05 16 23 H -0.28 -7.22 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 25 H -0.28 -6.77 6.52 56.52 0.37 -6.41 16 26 C 0.09 1.18 5.92 -3.55 -0.02 1.16 16 27 S 0.11 1.11 23.31 -107.50 -2.51 -1.40 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 34 H 0.06 0.54 7.25 -51.93 -0.38 0.16 16 35 H 0.11 0.70 7.20 -51.93 -0.37 0.32 16 36 H 0.10 0.71 7.65 -51.93 -0.40 0.32 16 37 H 0.09 0.49 6.06 -51.93 -0.31 0.17 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.36 8.93 5.41 -40.82 -0.22 8.71 16 44 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 45 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.10 1.50 7.08 -51.93 -0.37 1.13 16 LS Contribution 385.48 15.07 5.81 5.81 Total: -1.00 -36.29 385.48 -9.94 -46.23 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.14 Total: 3.80 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -1.05 Total: -2.40 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.06 Total: -55.57 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.27 Total: -14.52 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.71 Total: 18.05 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.51 Total: -1.40 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.29 -9.94 -46.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502090468.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.010 kcal (2) G-P(sol) polarization free energy of solvation -36.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds