Wall clock time and date at job start Tue Mar 31 2020 20:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.76197 * 126.03682 * 2 1 4 4 C 1.70970 * 90.28459 * 180.02562 * 3 2 1 5 5 C 1.50706 * 124.91444 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47230 * 270.01838 * 5 4 3 7 7 O 1.21289 * 119.99840 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00128 * 179.97438 * 6 5 4 9 9 C 1.47024 * 125.64726 * 0.03634 * 8 6 5 10 10 C 1.54321 * 107.39958 * 178.82085 * 9 8 6 11 11 C 1.55405 * 102.83228 * 337.97496 * 10 9 8 12 12 O 1.42897 * 110.89370 * 277.27122 * 11 10 9 13 13 C 1.50697 * 111.07414 * 153.48405 * 11 10 9 14 14 H 1.07994 * 120.00504 * 242.41907 * 13 11 10 15 15 C 1.37876 * 119.99341 * 62.41212 * 13 11 10 16 16 N 1.31515 * 120.00620 * 4.92746 * 15 13 11 17 17 Si 1.86811 * 119.99657 * 184.92297 * 15 13 11 18 18 H 1.48505 * 109.46708 * 95.00337 * 17 15 13 19 19 H 1.48493 * 109.46952 * 215.00017 * 17 15 13 20 20 H 1.48496 * 109.47256 * 335.00588 * 17 15 13 21 21 C 1.47422 * 125.64530 * 179.97438 * 8 6 5 22 22 N 1.29023 * 110.16778 * 0.24077 * 4 3 2 23 23 C 1.31779 * 117.12505 * 359.54678 * 22 4 3 24 24 C 1.50700 * 122.75319 * 180.22475 * 23 22 4 25 25 C 1.53003 * 109.46982 * 300.27173 * 24 23 22 26 26 C 1.52996 * 109.47133 * 60.27166 * 24 23 22 27 27 H 1.08993 * 109.47285 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.46960 * 119.98111 * 1 2 3 29 29 H 1.09004 * 109.47184 * 239.97854 * 1 2 3 30 30 H 1.09007 * 109.46652 * 150.02576 * 5 4 3 31 31 H 1.08995 * 109.47197 * 30.02340 * 5 4 3 32 32 H 1.08996 * 109.88191 * 298.31587 * 9 8 6 33 33 H 1.09002 * 109.88324 * 59.32707 * 9 8 6 34 34 H 1.08997 * 110.71926 * 96.24702 * 10 9 8 35 35 H 1.09004 * 110.71964 * 219.52077 * 10 9 8 36 36 H 0.96698 * 113.99652 * 292.23333 * 12 11 10 37 37 H 0.96993 * 120.00033 * 179.97438 * 16 15 13 38 38 H 1.08993 * 110.37362 * 323.00856 * 21 8 6 39 39 H 1.09005 * 110.36310 * 85.33675 * 21 8 6 40 40 H 1.09003 * 109.47239 * 180.27251 * 24 23 22 41 41 H 1.09006 * 109.46816 * 179.97438 * 25 24 23 42 42 H 1.08999 * 109.46907 * 299.99381 * 25 24 23 43 43 H 1.08994 * 109.47216 * 60.00110 * 25 24 23 44 44 H 1.08996 * 109.47239 * 59.99519 * 26 24 23 45 45 H 1.09000 * 109.47616 * 180.02562 * 26 24 23 46 46 H 1.09003 * 109.47127 * 300.00153 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5435 1.4248 0.0000 4 6 3.9311 0.4258 -0.0008 5 6 5.3531 0.9248 -0.0017 6 6 5.8261 1.0914 -1.4228 7 8 5.0816 0.8311 -2.3442 8 7 7.0761 1.5306 -1.6699 9 6 8.0778 1.8814 -0.6525 10 6 9.3632 2.3014 -1.3960 11 6 9.1950 1.6252 -2.7851 12 8 9.6065 0.2576 -2.7393 13 6 9.9507 2.3783 -3.8494 14 1 9.4178 2.8290 -4.6736 15 6 11.3225 2.4921 -3.7709 16 7 11.9814 1.8631 -2.8223 17 14 12.2454 3.5397 -5.0121 18 1 12.4556 4.8994 -4.4530 19 1 13.5608 2.9162 -5.3052 20 1 11.4533 3.6365 -6.2644 21 6 7.6658 1.7376 -3.0051 22 7 3.5844 -0.8169 -0.0061 23 6 2.2933 -1.0806 -0.0004 24 6 1.7481 -2.4855 -0.0006 25 6 2.2355 -3.2216 -1.2502 26 6 2.2363 -3.2222 1.2483 27 1 -0.3633 1.0276 0.0005 28 1 -0.3633 -0.5136 -0.8902 29 1 -0.3634 -0.5142 0.8898 30 1 5.9910 0.2050 0.5115 31 1 5.4017 1.8847 0.5123 32 1 7.7141 2.7095 -0.0442 33 1 8.2812 1.0178 -0.0193 34 1 9.4126 3.3854 -1.4988 35 1 10.2469 1.9209 -0.8837 36 1 10.5563 0.1370 -2.6031 37 1 12.9465 1.9429 -2.7673 38 1 7.3240 0.9658 -3.6946 39 1 7.4088 2.7268 -3.3840 40 1 0.6585 -2.4524 -0.0003 41 1 1.8415 -4.2380 -1.2501 42 1 1.8876 -2.6968 -2.1399 43 1 3.3250 -3.2547 -1.2506 44 1 1.8891 -2.6978 2.1385 45 1 1.8424 -4.2385 1.2480 46 1 3.3258 -3.2553 1.2479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:26 Heat of formation + Delta-G solvation = -77.575496 kcal Electronic energy + Delta-G solvation = -27165.623810 eV Core-core repulsion = 23373.528880 eV Total energy + Delta-G solvation = -3792.094930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.40573 -40.80102 -38.97250 -36.17599 -36.07179 -34.18521 -33.63992 -32.27017 -31.07116 -29.94197 -28.03526 -27.43195 -26.54077 -24.74416 -23.90617 -22.57502 -21.55392 -20.34589 -19.81075 -19.14633 -18.41956 -18.27294 -17.09103 -16.90229 -16.67997 -16.27914 -16.11497 -15.63921 -15.28126 -15.04896 -14.87752 -14.79824 -14.18219 -14.03753 -13.86913 -13.86331 -13.74823 -13.59561 -13.43602 -13.23675 -13.08236 -12.97443 -12.95004 -12.88228 -12.61336 -12.46510 -12.28333 -12.09124 -11.86430 -11.81861 -11.66228 -11.30662 -11.05998 -10.62699 -10.55849 -10.15821 -10.12904 -9.60598 -9.52793 -8.25689 -6.40174 -0.30659 0.39305 0.75501 1.41638 1.45277 1.53237 1.55163 1.70392 2.11803 2.40037 2.99616 3.03888 3.50641 3.72940 3.83781 3.90164 4.00790 4.05496 4.12380 4.25044 4.34045 4.35370 4.38250 4.43875 4.49423 4.59652 4.71057 4.72119 4.74779 4.78335 4.88349 4.94915 4.96244 5.01214 5.13149 5.17796 5.24967 5.31066 5.33288 5.46150 5.46811 5.53301 5.76869 6.06081 6.55886 6.64299 6.83346 7.06989 7.30538 7.43847 8.80585 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023526 B = 0.002460 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.885884 B =11379.929877 C =11755.247473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.224 4.224 3 S 0.140 5.860 4 C 0.043 3.957 5 C -0.052 4.052 6 C 0.525 3.475 7 O -0.587 6.587 8 N -0.608 5.608 9 C 0.102 3.898 10 C -0.128 4.128 11 C 0.233 3.767 12 O -0.597 6.597 13 C -0.563 4.563 14 H 0.054 0.946 15 C 0.038 3.962 16 N -0.906 5.906 17 Si 0.960 3.040 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.277 1.277 21 C 0.127 3.873 22 N -0.480 5.480 23 C 0.046 3.954 24 C -0.017 4.017 25 C -0.138 4.138 26 C -0.134 4.134 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.132 0.868 31 H 0.148 0.852 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.380 0.620 37 H 0.272 0.728 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.034 0.966 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.521 -2.177 12.736 23.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.345 4.345 3 S 0.397 5.603 4 C -0.235 4.235 5 C -0.095 4.095 6 C 0.313 3.687 7 O -0.468 6.468 8 N -0.340 5.340 9 C -0.020 4.020 10 C -0.167 4.167 11 C 0.192 3.808 12 O -0.406 6.406 13 C -0.601 4.601 14 H 0.072 0.928 15 C -0.164 4.164 16 N -0.546 5.546 17 Si 0.786 3.214 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.202 1.202 21 C 0.004 3.996 22 N -0.194 5.194 23 C -0.086 4.086 24 C -0.038 4.038 25 C -0.196 4.196 26 C -0.192 4.192 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.150 0.850 31 H 0.166 0.834 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.231 0.769 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.127 0.873 41 H 0.101 0.899 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -20.161 -1.748 12.273 23.668 hybrid contribution 1.566 -0.241 -1.063 1.908 sum -18.595 -1.989 11.210 21.804 Atomic orbital electron populations 1.20378 0.84222 1.04179 1.04344 1.26230 1.03075 0.93759 1.11485 1.83610 0.97816 1.11218 1.67645 1.26115 1.00382 0.91868 1.05094 1.20245 0.89690 1.05862 0.93711 1.20504 0.80186 0.76199 0.91762 1.90673 1.55339 1.52727 1.48032 1.48614 1.12235 1.64125 1.09004 1.22301 0.88206 1.00955 0.90504 1.23000 0.95850 1.00518 0.97324 1.19869 0.88305 0.79843 0.92734 1.86109 1.30188 1.28281 1.96063 1.21668 0.92989 1.35298 1.10115 0.92769 1.25603 0.97911 0.95795 0.97088 1.69692 1.08942 1.42317 1.33609 0.85514 0.77704 0.79034 0.79162 1.19551 1.20708 1.20217 1.22134 0.93506 0.99600 0.84374 1.65929 1.18907 1.19289 1.15314 1.20456 0.86692 0.98101 1.03359 1.19868 1.00546 0.86844 0.96541 1.21740 1.00634 1.00714 0.96501 1.21716 1.00921 1.00507 0.96037 0.90215 0.89460 0.88316 0.84982 0.83424 0.88324 0.90690 0.91455 0.90801 0.76931 0.91815 0.94159 0.90690 0.87260 0.89889 0.93952 0.94637 0.92377 0.90265 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 9.23 71.23 0.66 -0.29 16 2 C -0.22 -4.98 6.59 24.64 0.16 -4.82 16 3 S 0.14 3.38 23.18 -56.49 -1.31 2.07 16 4 C 0.04 1.27 5.88 88.52 0.52 1.79 16 5 C -0.05 -1.42 5.47 29.10 0.16 -1.26 16 6 C 0.53 19.72 7.84 87.66 0.69 20.41 16 7 O -0.59 -26.96 16.29 -3.06 -0.05 -27.01 16 8 N -0.61 -23.41 3.33 -811.79 -2.70 -26.11 16 9 C 0.10 3.31 6.48 86.73 0.56 3.87 16 10 C -0.13 -5.24 5.52 31.87 0.18 -5.07 16 11 C 0.23 11.27 0.89 -10.06 -0.01 11.26 16 12 O -0.60 -31.24 13.19 -148.98 -1.96 -33.21 16 13 C -0.56 -29.40 8.27 25.60 0.21 -29.19 16 14 H 0.05 2.87 7.79 -2.91 -0.02 2.85 16 15 C 0.04 1.90 5.26 84.65 0.45 2.34 16 16 N -0.91 -45.89 10.77 21.45 0.23 -45.66 16 17 Si 0.96 40.76 29.54 68.60 2.03 42.79 16 18 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 21 C 0.13 5.79 6.08 86.86 0.53 6.32 16 22 N -0.48 -15.13 10.43 -179.40 -1.87 -17.00 16 23 C 0.05 1.19 5.31 41.52 0.22 1.41 16 24 C -0.02 -0.34 3.20 -11.54 -0.04 -0.38 16 25 C -0.14 -3.08 9.14 71.98 0.66 -2.43 16 26 C -0.13 -2.41 9.14 71.98 0.66 -1.75 16 27 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.13 3.28 8.14 -2.38 -0.02 3.26 16 31 H 0.15 2.80 8.14 -2.39 -0.02 2.79 16 32 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 34 H 0.07 2.73 8.03 -2.39 -0.02 2.71 16 35 H 0.07 3.18 7.72 -2.38 -0.02 3.16 16 36 H 0.38 19.98 7.18 -74.06 -0.53 19.44 16 37 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 38 H 0.04 2.04 8.04 -2.39 -0.02 2.02 16 39 H 0.07 3.31 8.03 -2.38 -0.02 3.29 16 40 H 0.11 1.54 7.02 -2.39 -0.02 1.53 16 41 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -68.00 390.32 0.41 -67.59 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: 0.45 Total: 34.34 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 5.60 Total: 2.21 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -4.34 Total: -88.77 kcal Atomic # 8 Polarization: -58.20 SS G_CDS: -2.01 Total: -60.21 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.31 Total: 2.07 kcal Total: -68.00 0.41 -67.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.990 kcal (2) G-P(sol) polarization free energy of solvation -67.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds