Wall clock time and date at job start Tue Mar 31 2020 20:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47161 * 2 1 4 4 S 1.70612 * 124.52302 * 270.02707 * 3 2 1 5 5 C 1.75836 * 91.56475 * 179.97438 * 4 3 2 6 6 C 1.46576 * 125.45801 * 179.97438 * 5 4 3 7 7 O 1.21708 * 119.99697 * 180.02562 * 6 5 4 8 8 N 1.34780 * 120.00354 * 0.02684 * 6 5 4 9 9 C 1.46499 * 119.99795 * 180.02562 * 8 6 5 10 10 C 1.53008 * 109.46619 * 179.97438 * 9 8 6 11 11 H 1.09006 * 109.67871 * 300.68342 * 10 9 8 12 12 C 1.53302 * 109.67967 * 180.16752 * 10 9 8 13 13 O 1.42958 * 109.21930 * 187.97342 * 12 10 9 14 14 C 1.42961 * 114.16696 * 62.58104 * 13 12 10 15 15 C 1.53295 * 109.22248 * 297.41438 * 14 13 12 16 16 N 1.47148 * 109.68448 * 61.20211 * 10 9 8 17 17 C 1.36942 * 120.97769 * 350.23613 * 16 10 9 18 18 H 1.07994 * 119.99973 * 49.82797 * 17 16 10 19 19 C 1.38810 * 119.99433 * 229.82403 * 17 16 10 20 20 N 1.31624 * 119.99852 * 188.99624 * 19 17 16 21 21 Si 1.86800 * 120.00310 * 8.99929 * 19 17 16 22 22 H 1.48493 * 109.47444 * 84.28273 * 21 19 17 23 23 H 1.48503 * 109.47178 * 204.28359 * 21 19 17 24 24 H 1.48506 * 109.46981 * 324.27848 * 21 19 17 25 25 C 1.36644 * 109.08145 * 359.97438 * 5 4 3 26 26 C 1.33814 * 124.52150 * 89.72625 * 3 2 1 27 27 C 1.50698 * 122.44964 * 0.02562 * 26 3 2 28 28 H 1.08999 * 109.47522 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46819 * 300.00381 * 1 2 3 30 30 H 1.09002 * 109.47020 * 59.99692 * 1 2 3 31 31 H 1.09002 * 109.47020 * 120.00308 * 2 1 3 32 32 H 1.09000 * 109.47088 * 240.00032 * 2 1 3 33 33 H 0.96992 * 119.99501 * 359.97438 * 8 6 5 34 34 H 1.08996 * 109.47322 * 299.99531 * 9 8 6 35 35 H 1.09001 * 109.47310 * 60.00106 * 9 8 6 36 36 H 1.08996 * 109.51189 * 307.90230 * 12 10 9 37 37 H 1.09001 * 109.50830 * 67.99755 * 12 10 9 38 38 H 1.09000 * 109.50958 * 57.34149 * 14 13 12 39 39 H 1.09007 * 109.50758 * 177.48959 * 14 13 12 40 40 H 1.09004 * 109.67823 * 172.02529 * 15 14 13 41 41 H 1.08998 * 109.68342 * 292.57690 * 15 14 13 42 42 H 0.96997 * 120.00286 * 179.97438 * 20 19 17 43 43 H 1.07995 * 123.35260 * 179.97438 * 25 5 4 44 44 H 1.08997 * 109.47223 * 90.00222 * 27 26 3 45 45 H 1.09006 * 109.47244 * 210.00233 * 27 26 3 46 46 H 1.09001 * 109.47136 * 330.00142 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3540 2.3326 -1.4057 5 6 2.8455 3.7238 -0.4491 6 6 3.2998 5.0088 -0.9883 7 8 3.6179 5.9078 -0.2320 8 7 3.3652 5.1950 -2.3215 9 6 3.8198 6.4792 -2.8603 10 6 3.8011 6.4261 -4.3894 11 1 4.4541 5.6254 -4.7368 12 6 4.2800 7.7665 -4.9585 13 8 4.0840 7.7736 -6.3745 14 6 2.7165 7.6632 -6.7766 15 6 2.1576 6.3174 -6.3007 16 7 2.4279 6.1852 -4.8602 17 6 1.4311 5.8484 -3.9836 18 1 1.2782 6.4337 -3.0890 19 6 0.6174 4.7547 -4.2451 20 7 -0.4470 4.5339 -3.5029 21 14 1.0328 3.5961 -5.6503 22 1 2.0206 2.5892 -5.1862 23 1 -0.2014 2.9060 -6.1043 24 1 1.6092 4.3720 -6.7777 25 6 2.7361 3.4148 0.8775 26 6 2.2802 2.1375 1.1025 27 6 2.0779 1.5838 2.4894 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1121 4.4784 -2.9242 34 1 3.1568 7.2729 -2.5159 35 1 4.8347 6.6788 -2.5165 36 1 3.7091 8.5782 -4.5077 37 1 5.3388 7.8989 -4.7360 38 1 2.1399 8.4746 -6.3325 39 1 2.6508 7.7210 -7.8632 40 1 1.0825 6.2835 -6.4771 41 1 2.6446 5.5058 -6.8411 42 1 -1.0159 3.7699 -3.6859 43 1 2.9808 4.1062 1.6703 44 1 2.9982 1.1081 2.8284 45 1 1.8159 2.3942 3.1696 46 1 1.2734 0.8485 2.4733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051237888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:03 Heat of formation + Delta-G solvation = -26.438845 kcal Electronic energy + Delta-G solvation = -28232.565155 eV Core-core repulsion = 24442.687678 eV Total energy + Delta-G solvation = -3789.877478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.39453 -38.69348 -37.96457 -35.39401 -33.62994 -33.54474 -31.82005 -31.10856 -30.08432 -27.65402 -27.27571 -25.88435 -23.87927 -23.32909 -22.36270 -21.88800 -20.14796 -19.87387 -18.38771 -17.54288 -16.79622 -16.13380 -15.83125 -15.72551 -15.18101 -15.00024 -14.45777 -14.35464 -14.19878 -14.13793 -14.01302 -13.72750 -13.40482 -13.08034 -12.79102 -12.66375 -12.52779 -12.17562 -12.08893 -11.97990 -11.87580 -11.63015 -11.34911 -11.21979 -11.02090 -10.94633 -10.82769 -10.80963 -10.38391 -10.24704 -9.90663 -9.61467 -9.50596 -9.15228 -8.61834 -8.41698 -8.17753 -8.00952 -6.72718 -6.09459 -3.74034 0.90435 1.85600 2.29041 2.66668 3.21300 3.33653 3.37122 3.69033 3.90783 4.31771 4.38879 4.71764 4.78371 5.03112 5.15951 5.19804 5.29148 5.41591 5.44944 5.46620 5.56823 5.59955 5.67846 5.69846 5.78536 5.83518 5.83911 5.91750 5.93995 5.95001 6.01497 6.04470 6.14526 6.22785 6.25037 6.29813 6.42363 6.58005 6.62224 6.72350 6.76170 7.09830 7.61619 7.94814 8.20476 8.31337 8.77910 8.82105 9.51483 9.98642 11.02400 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014918 B = 0.004337 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.539078 B = 6454.456835 C = 7776.232685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C -0.213 4.213 4 S 0.228 5.772 5 C -0.245 4.245 6 C 0.588 3.412 7 O -0.555 6.555 8 N -0.685 5.685 9 C 0.141 3.859 10 C 0.122 3.878 11 H 0.044 0.956 12 C 0.056 3.944 13 O -0.389 6.389 14 C 0.042 3.958 15 C 0.102 3.898 16 N -0.606 5.606 17 C -0.274 4.274 18 H 0.078 0.922 19 C 0.052 3.948 20 N -0.889 5.889 21 Si 0.836 3.164 22 H -0.281 1.281 23 H -0.297 1.297 24 H -0.235 1.235 25 C -0.065 4.065 26 C -0.123 4.123 27 C -0.089 4.089 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.407 0.593 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.265 0.735 43 H 0.147 0.853 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.676 -6.556 3.712 9.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 C -0.333 4.333 4 S 0.499 5.501 5 C -0.366 4.366 6 C 0.373 3.627 7 O -0.437 6.437 8 N -0.334 5.334 9 C 0.017 3.983 10 C 0.016 3.984 11 H 0.062 0.938 12 C -0.023 4.023 13 O -0.307 6.307 14 C -0.036 4.036 15 C -0.023 4.023 16 N -0.333 5.333 17 C -0.403 4.403 18 H 0.096 0.904 19 C -0.151 4.151 20 N -0.529 5.529 21 Si 0.664 3.336 22 H -0.207 1.207 23 H -0.224 1.224 24 H -0.160 1.160 25 C -0.099 4.099 26 C -0.137 4.137 27 C -0.148 4.148 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.245 0.755 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.165 0.835 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.774 -6.300 2.513 8.908 hybrid contribution -0.470 -0.795 0.649 1.129 sum 5.303 -7.096 3.162 9.406 Atomic orbital electron populations 1.21804 0.94240 1.01667 1.03032 1.20059 0.96309 0.89742 1.02825 1.24064 1.09225 1.01986 0.98044 1.83428 1.58590 1.01692 1.06376 1.24562 1.14506 0.99688 0.97829 1.16864 0.77775 0.85444 0.82573 1.90744 1.51423 1.43035 1.58475 1.45719 1.65374 1.16675 1.05669 1.21109 0.98403 0.86411 0.92385 1.21580 0.88639 0.95858 0.92337 0.93801 1.22879 1.00405 0.97180 0.81841 1.87820 1.26342 1.94561 1.22023 1.23153 0.82725 0.98865 0.98830 1.22370 0.99785 0.94080 0.86025 1.44358 1.03905 1.82424 1.02621 1.18656 1.08228 1.08835 1.04550 0.90422 1.25716 0.96609 0.96371 0.96454 1.69778 1.14241 1.29385 1.39447 0.87804 0.77802 0.82512 0.85486 1.20703 1.22386 1.16024 1.20458 0.98582 0.95709 0.95123 1.18531 1.04941 0.94094 0.96101 1.20457 1.01571 1.00789 0.91987 0.92267 0.92215 0.91997 0.90207 0.91059 0.75519 0.91032 0.92062 0.93011 0.89474 0.93331 0.89971 0.90800 0.94066 0.92525 0.83526 0.91691 0.91620 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.89 37.16 0.37 -1.35 16 2 C -0.05 -0.59 5.71 -27.88 -0.16 -0.75 16 3 C -0.21 -3.18 5.53 -35.86 -0.20 -3.38 16 4 S 0.23 4.02 22.10 -107.50 -2.38 1.65 16 5 C -0.24 -4.71 6.45 -36.80 -0.24 -4.95 16 6 C 0.59 12.50 7.78 -12.90 -0.10 12.40 16 7 O -0.56 -12.87 16.84 5.18 0.09 -12.78 16 8 N -0.68 -14.06 4.12 -61.65 -0.25 -14.32 16 9 C 0.14 2.67 4.50 -4.04 -0.02 2.65 16 10 C 0.12 2.27 3.20 -67.42 -0.22 2.05 16 11 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 12 C 0.06 0.91 6.29 37.31 0.23 1.15 16 13 O -0.39 -6.87 10.74 -35.23 -0.38 -7.25 16 14 C 0.04 0.72 6.99 37.31 0.26 0.98 16 15 C 0.10 2.03 4.27 -3.53 -0.02 2.01 16 16 N -0.61 -12.99 2.45 -164.29 -0.40 -13.40 16 17 C -0.27 -6.80 6.67 -15.06 -0.10 -6.90 16 18 H 0.08 2.22 7.10 -52.49 -0.37 1.85 16 19 C 0.05 1.33 5.36 -17.43 -0.09 1.23 16 20 N -0.89 -24.61 13.97 55.49 0.78 -23.84 16 21 Si 0.84 19.13 26.73 -169.99 -4.54 14.59 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.30 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.24 -4.99 3.87 56.52 0.22 -4.77 16 25 C -0.07 -1.12 9.80 -40.43 -0.40 -1.51 16 26 C -0.12 -1.82 5.78 -106.45 -0.62 -2.44 16 27 C -0.09 -0.98 9.56 36.00 0.34 -0.64 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.68 7.77 -51.93 -0.40 0.28 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.78 7.26 -51.93 -0.38 0.40 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.41 8.64 6.47 -40.82 -0.26 8.37 16 34 H 0.07 1.49 7.55 -51.93 -0.39 1.09 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.07 1.53 6.85 -51.93 -0.36 1.18 16 41 H 0.04 0.84 6.13 -51.93 -0.32 0.52 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.15 2.37 8.06 -52.49 -0.42 1.95 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 46 H 0.06 0.64 6.83 -51.93 -0.35 0.28 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -29.59 374.70 -9.62 -39.21 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -7.23 Total: 9.92 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -0.94 Total: 0.57 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.12 Total: -51.55 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.29 Total: -20.03 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.54 Total: 14.59 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -2.38 Total: 1.65 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.59 -9.62 -39.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051237888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.768 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds