Wall clock time and date at job start Tue Mar 31 2020 20:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.47116 * 2 1 4 4 S 1.70608 * 124.51974 * 270.02179 * 3 2 1 5 5 C 1.75841 * 91.56081 * 179.81555 * 4 3 2 6 6 C 1.46587 * 125.45471 * 180.19980 * 5 4 3 7 7 O 1.21699 * 119.99242 * 180.09748 * 6 5 4 8 8 N 1.34768 * 120.00465 * 0.10110 * 6 5 4 9 9 C 1.46500 * 120.00274 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47370 * 180.02562 * 9 8 6 11 11 H 1.08996 * 109.68320 * 59.76599 * 10 9 8 12 12 C 1.53298 * 109.68309 * 180.32482 * 10 9 8 13 13 O 1.42967 * 109.22348 * 172.02273 * 12 10 9 14 14 C 1.42966 * 114.16732 * 297.42056 * 13 12 10 15 15 C 1.53299 * 109.22407 * 62.57915 * 14 13 12 16 16 N 1.47156 * 108.38322 * 307.69750 * 15 14 13 17 17 C 1.36931 * 120.98307 * 230.55096 * 16 15 14 18 18 H 1.08003 * 119.99932 * 149.40865 * 17 16 15 19 19 C 1.38808 * 120.00298 * 329.41746 * 17 16 15 20 20 N 1.31615 * 120.00345 * 163.36520 * 19 17 16 21 21 Si 1.86806 * 119.99796 * 343.36604 * 19 17 16 22 22 H 1.48498 * 109.46943 * 88.93357 * 21 19 17 23 23 H 1.48497 * 109.46925 * 208.93424 * 21 19 17 24 24 H 1.48502 * 109.47131 * 328.93344 * 21 19 17 25 25 C 1.36638 * 109.08331 * 0.28940 * 5 4 3 26 26 C 1.33815 * 124.52034 * 90.00111 * 3 2 1 27 27 C 1.50703 * 122.45265 * 359.97438 * 26 3 2 28 28 H 1.08999 * 109.46893 * 300.00323 * 1 2 3 29 29 H 1.09006 * 109.46686 * 59.99866 * 1 2 3 30 30 H 1.08992 * 109.47475 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47263 * 239.99901 * 2 1 3 32 32 H 1.08998 * 109.47050 * 119.99594 * 2 1 3 33 33 H 0.97007 * 120.00148 * 359.97438 * 8 6 5 34 34 H 1.09006 * 109.46702 * 299.99831 * 9 8 6 35 35 H 1.08996 * 109.47246 * 59.99446 * 9 8 6 36 36 H 1.08995 * 109.50948 * 291.94564 * 12 10 9 37 37 H 1.08999 * 109.50926 * 52.10414 * 12 10 9 38 38 H 1.09002 * 109.50858 * 302.65763 * 14 13 12 39 39 H 1.08994 * 109.55694 * 182.52917 * 14 13 12 40 40 H 1.08994 * 109.68184 * 187.97776 * 15 14 13 41 41 H 1.08995 * 109.71250 * 67.43936 * 15 14 13 42 42 H 0.97004 * 120.00052 * 179.97438 * 20 19 17 43 43 H 1.07995 * 123.35582 * 179.97438 * 25 5 4 44 44 H 1.08993 * 109.47207 * 270.00021 * 27 26 3 45 45 H 1.08997 * 109.46483 * 30.00525 * 27 26 3 46 46 H 1.08996 * 109.46859 * 150.00090 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 16 2.3541 2.3326 -1.4057 5 6 2.8409 3.7254 -0.4491 6 6 3.2887 5.0128 -0.9884 7 8 3.6052 5.9122 -0.2321 8 7 3.3498 5.2004 -2.3215 9 6 3.7967 6.4873 -2.8604 10 6 3.7732 6.4358 -4.3893 11 1 2.7603 6.2279 -4.7341 12 6 4.2479 7.7777 -4.9585 13 8 4.4002 7.6607 -6.3752 14 6 5.3888 6.7110 -6.7811 15 6 4.9725 5.3145 -6.3053 16 7 4.6843 5.3821 -4.8638 17 6 5.2474 4.4910 -3.9898 18 1 5.4569 4.7905 -2.9735 19 6 5.5492 3.2030 -4.4100 20 7 6.3711 2.4560 -3.7039 21 14 4.7886 2.5297 -5.9778 22 1 5.6569 2.8680 -7.1340 23 1 4.6589 1.0543 -5.8710 24 1 3.4454 3.1318 -6.1746 25 6 2.7369 3.4146 0.8775 26 6 2.2852 2.1358 1.1025 27 6 2.0882 1.5802 2.4895 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.0978 4.4834 -2.9243 34 1 3.1307 7.2775 -2.5135 35 1 4.8115 6.6915 -2.5190 36 1 3.5115 8.5493 -4.7340 37 1 5.2048 8.0452 -4.5104 38 1 6.3498 6.9747 -6.3395 39 1 5.4741 6.7150 -7.8677 40 1 5.7835 4.6087 -6.4847 41 1 4.0807 4.9934 -6.8434 42 1 6.5817 1.5557 -3.9974 43 1 2.9801 4.1065 1.6702 44 1 1.0720 1.7892 2.8236 45 1 2.2519 0.5027 2.4758 46 1 2.7982 2.0470 3.1721 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051237889.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:06 Heat of formation + Delta-G solvation = -26.328151 kcal Electronic energy + Delta-G solvation = -28038.466766 eV Core-core repulsion = 24248.594088 eV Total energy + Delta-G solvation = -3789.872678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.49125 -38.75285 -38.03091 -35.47289 -33.71677 -33.65214 -31.80430 -31.12320 -30.15765 -27.69041 -27.31622 -25.96022 -23.97437 -23.42807 -22.41954 -21.94298 -20.17579 -19.88652 -18.45710 -17.62287 -16.81440 -16.23117 -15.92470 -15.74152 -15.21976 -15.01838 -14.55032 -14.51019 -14.25155 -14.11083 -13.98857 -13.85391 -13.42742 -13.25567 -12.90556 -12.60290 -12.57132 -12.23771 -12.16598 -11.99012 -11.88616 -11.68505 -11.43125 -11.29182 -11.16759 -11.05118 -10.79938 -10.58481 -10.45790 -10.36024 -9.85519 -9.66370 -9.62530 -9.30225 -8.72775 -8.49455 -8.25419 -8.07361 -7.05041 -6.05930 -3.50017 0.84203 1.79174 2.22593 2.61330 3.19361 3.36712 3.37859 3.62177 3.81289 4.27338 4.38816 4.62882 4.70888 4.97302 5.13162 5.19019 5.19965 5.36658 5.39318 5.40297 5.50180 5.54879 5.62681 5.64639 5.71213 5.76284 5.76793 5.87250 5.88653 5.89746 5.93834 5.98178 6.09348 6.11031 6.17260 6.23861 6.32854 6.48098 6.53892 6.66886 6.69279 7.00515 7.57307 7.78230 8.11483 8.22456 8.73301 8.76883 9.55734 9.92527 11.07721 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.004103 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.574844 B = 6822.257799 C = 7972.113426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.054 4.054 3 C -0.211 4.211 4 S 0.226 5.774 5 C -0.248 4.248 6 C 0.588 3.412 7 O -0.552 6.552 8 N -0.690 5.690 9 C 0.137 3.863 10 C 0.127 3.873 11 H 0.046 0.954 12 C 0.055 3.945 13 O -0.388 6.388 14 C 0.046 3.954 15 C 0.091 3.909 16 N -0.607 5.607 17 C -0.272 4.272 18 H 0.097 0.903 19 C 0.034 3.966 20 N -0.896 5.896 21 Si 0.875 3.125 22 H -0.287 1.287 23 H -0.301 1.301 24 H -0.270 1.270 25 C -0.063 4.063 26 C -0.124 4.124 27 C -0.089 4.089 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.409 0.591 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.034 0.966 42 H 0.264 0.736 43 H 0.148 0.852 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.289 -1.350 4.584 11.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.093 4.093 3 C -0.331 4.331 4 S 0.497 5.503 5 C -0.369 4.369 6 C 0.373 3.627 7 O -0.434 6.434 8 N -0.341 5.341 9 C 0.013 3.987 10 C 0.020 3.980 11 H 0.064 0.936 12 C -0.024 4.024 13 O -0.306 6.306 14 C -0.032 4.032 15 C -0.035 4.035 16 N -0.334 5.334 17 C -0.400 4.400 18 H 0.114 0.886 19 C -0.166 4.166 20 N -0.538 5.538 21 Si 0.705 3.295 22 H -0.214 1.214 23 H -0.229 1.229 24 H -0.195 1.195 25 C -0.096 4.096 26 C -0.137 4.137 27 C -0.148 4.148 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.247 0.753 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.165 0.835 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.176 -1.063 3.386 10.777 hybrid contribution 0.055 -0.857 0.405 0.950 sum -10.120 -1.921 3.791 10.976 Atomic orbital electron populations 1.21771 0.94417 1.01744 1.02451 1.20100 0.96026 0.89851 1.03296 1.24047 1.08880 1.02148 0.97991 1.83358 1.58181 1.02254 1.06464 1.24556 1.15085 0.99361 0.97886 1.16872 0.77829 0.85433 0.82521 1.90754 1.51023 1.43134 1.58440 1.45816 1.65800 1.16678 1.05782 1.21174 1.00424 0.84691 0.92402 1.21465 0.94047 0.90200 0.92256 0.93596 1.22902 1.00809 0.96848 0.81837 1.87828 1.59870 1.60950 1.21974 1.23066 0.91119 0.90094 0.98931 1.22061 0.99444 0.96120 0.85835 1.44435 1.51769 1.34652 1.02506 1.19014 1.35250 0.90106 0.95621 0.88579 1.25309 0.98159 0.96024 0.97132 1.69794 1.34111 1.10165 1.39688 0.87114 0.80736 0.77471 0.84178 1.21397 1.22925 1.19499 1.20473 0.98293 0.95722 0.95141 1.18543 1.04888 0.94075 0.96165 1.20460 1.01745 1.00613 0.91947 0.92333 0.92445 0.92195 0.90779 0.90002 0.75300 0.91781 0.90839 0.89312 0.92836 0.92979 0.89751 0.90008 0.94814 0.92581 0.83472 0.91635 0.91708 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.89 37.16 0.37 -0.99 16 2 C -0.05 -0.59 6.03 -27.88 -0.17 -0.76 16 3 C -0.21 -2.98 5.53 -35.86 -0.20 -3.18 16 4 S 0.23 3.75 22.10 -107.50 -2.38 1.37 16 5 C -0.25 -4.56 6.45 -36.79 -0.24 -4.80 16 6 C 0.59 12.05 7.78 -12.90 -0.10 11.95 16 7 O -0.55 -12.46 16.84 5.19 0.09 -12.38 16 8 N -0.69 -13.67 3.76 -61.65 -0.23 -13.90 16 9 C 0.14 2.53 4.44 -4.04 -0.02 2.51 16 10 C 0.13 2.34 3.21 -67.42 -0.22 2.13 16 11 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 12 C 0.05 0.90 6.29 37.31 0.23 1.13 16 13 O -0.39 -6.87 10.74 -35.23 -0.38 -7.25 16 14 C 0.05 0.81 6.99 37.31 0.26 1.07 16 15 C 0.09 1.87 4.38 -3.53 -0.02 1.85 16 16 N -0.61 -13.26 2.78 -164.30 -0.46 -13.72 16 17 C -0.27 -6.85 7.54 -15.06 -0.11 -6.96 16 18 H 0.10 2.67 5.98 -52.48 -0.31 2.36 16 19 C 0.03 0.91 5.29 -17.43 -0.09 0.82 16 20 N -0.90 -25.59 13.97 55.49 0.78 -24.81 16 21 Si 0.87 20.73 24.28 -169.99 -4.13 16.60 16 22 H -0.29 -6.63 6.54 56.52 0.37 -6.26 16 23 H -0.30 -7.33 7.11 56.52 0.40 -6.92 16 24 H -0.27 -6.26 6.64 56.52 0.38 -5.89 16 25 C -0.06 -1.03 9.80 -40.44 -0.40 -1.43 16 26 C -0.12 -1.74 5.78 -106.45 -0.62 -2.36 16 27 C -0.09 -0.93 9.84 36.01 0.35 -0.58 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.79 6.57 -51.93 -0.34 0.45 16 33 H 0.41 8.30 6.44 -40.82 -0.26 8.04 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.50 7.56 -51.93 -0.39 1.11 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.08 1.81 4.89 -51.93 -0.25 1.56 16 41 H 0.03 0.70 6.81 -51.93 -0.35 0.35 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.15 2.29 8.06 -52.49 -0.42 1.87 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.60 6.54 -51.93 -0.34 0.26 16 46 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -30.57 372.85 -8.99 -39.55 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.95 Total: 8.50 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.95 Total: 0.41 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.09 Total: -52.43 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.29 Total: -19.63 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.13 Total: 16.60 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -2.38 Total: 1.37 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.57 -8.99 -39.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051237889.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.227 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds