Wall clock time and date at job start Tue Mar 31 2020 20:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47339 * 2 1 4 4 C 1.33817 * 124.52376 * 90.00044 * 3 2 1 5 5 C 1.37479 * 115.09798 * 179.74810 * 4 3 2 6 6 C 1.36641 * 113.29781 * 0.49663 * 5 4 3 7 7 C 1.46589 * 125.45958 * 179.80025 * 6 5 4 8 8 O 1.21700 * 119.99441 * 359.71510 * 7 6 5 9 9 N 1.34773 * 120.00128 * 179.71819 * 7 6 5 10 10 C 1.46494 * 120.00181 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47496 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.55516 * 60.12496 * 11 10 9 13 13 C 1.53292 * 109.51189 * 180.25345 * 11 10 9 14 14 N 1.47233 * 108.40299 * 172.22959 * 13 11 10 15 15 C 1.36938 * 121.03150 * 129.45891 * 14 13 11 16 16 H 1.07995 * 120.00241 * 206.17702 * 15 14 13 17 17 C 1.38816 * 119.99718 * 26.17954 * 15 14 13 18 18 N 1.31615 * 120.00526 * 16.89599 * 17 15 14 19 19 Si 1.86806 * 119.99896 * 196.89669 * 17 15 14 20 20 H 1.48504 * 109.46919 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47372 * 119.99555 * 19 17 15 22 22 H 1.48500 * 109.47051 * 240.00016 * 19 17 15 23 23 C 1.47151 * 117.98790 * 309.48233 * 14 13 11 24 24 C 1.53300 * 108.41429 * 50.51917 * 23 14 13 25 25 O 1.42962 * 109.22183 * 307.68047 * 24 23 14 26 26 S 1.70615 * 124.52064 * 270.02493 * 3 2 1 27 27 H 1.08997 * 109.47276 * 59.99659 * 1 2 3 28 28 H 1.09000 * 109.47756 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46932 * 299.99918 * 1 2 3 30 30 H 1.09000 * 109.47082 * 239.99338 * 2 1 3 31 31 H 1.09005 * 109.47109 * 120.00038 * 2 1 3 32 32 H 1.08000 * 122.44962 * 0.04091 * 4 3 2 33 33 H 1.07998 * 123.35107 * 180.29136 * 5 4 3 34 34 H 0.97006 * 120.00217 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.47543 * 59.99407 * 10 9 7 36 36 H 1.09002 * 109.46900 * 300.00200 * 10 9 7 37 37 H 1.09005 * 109.47000 * 299.87605 * 12 11 10 38 38 H 1.09000 * 109.46959 * 59.86855 * 12 11 10 39 39 H 1.09000 * 109.47652 * 179.87596 * 12 11 10 40 40 H 1.09001 * 109.68446 * 291.94465 * 13 11 10 41 41 H 1.08991 * 109.68807 * 52.50281 * 13 11 10 42 42 H 0.97002 * 120.00383 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.67883 * 290.77953 * 23 14 13 44 44 H 1.08994 * 109.68171 * 170.26092 * 23 14 13 45 45 H 1.09004 * 109.51066 * 67.60375 * 24 23 14 46 46 H 1.09001 * 109.51236 * 187.70563 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2852 2.1358 1.1025 5 6 2.7424 3.4126 0.8774 6 6 2.8456 3.7236 -0.4492 7 6 3.2995 5.0089 -0.9885 8 8 3.6177 5.9078 -0.2322 9 7 3.3644 5.1952 -2.3217 10 6 3.8185 6.4794 -2.8606 11 6 3.7993 6.4264 -4.3896 12 6 2.3750 6.1490 -4.8745 13 6 4.2804 7.7678 -4.9545 14 7 4.4316 7.6307 -6.4126 15 6 3.8651 8.5364 -7.2693 16 1 3.6078 8.2402 -8.2755 17 6 3.6217 9.8353 -6.8445 18 7 4.2181 10.2979 -5.7663 19 14 2.4474 10.9269 -7.8032 20 1 1.9122 10.1760 -8.9672 21 1 1.3258 11.3410 -6.9226 22 1 3.1713 12.1318 -8.2825 23 6 5.2098 6.4904 -6.9219 24 6 4.6834 5.2112 -6.2611 25 8 4.6690 5.3860 -4.8423 26 16 2.3541 2.3325 -1.4057 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.1449 1.7373 2.0965 33 1 2.9919 4.1023 1.6701 34 1 3.1111 4.4786 -2.9245 35 1 4.8335 6.6792 -2.5171 36 1 3.1556 7.2730 -2.5158 37 1 2.0352 5.1930 -4.4761 38 1 1.7125 6.9426 -4.5289 39 1 2.3623 6.1138 -5.9639 40 1 3.5473 8.5436 -4.7331 41 1 5.2398 8.0309 -4.5092 42 1 4.0476 11.2054 -5.4692 43 1 6.2628 6.6248 -6.6746 44 1 5.0928 6.4198 -8.0033 45 1 3.6719 5.0091 -6.6134 46 1 5.3327 4.3745 -6.5190 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108058073.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:39 Heat of formation + Delta-G solvation = -31.132090 kcal Electronic energy + Delta-G solvation = -27327.125479 eV Core-core repulsion = 23537.044487 eV Total energy + Delta-G solvation = -3790.080992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.85389 -38.91465 -37.97451 -34.95502 -34.34042 -34.03845 -31.84470 -31.27161 -29.13998 -27.96564 -26.63589 -25.93606 -24.78947 -23.24928 -22.65175 -21.73775 -20.89497 -19.52576 -18.64846 -17.97624 -17.08835 -16.35680 -15.91156 -15.62724 -15.19529 -15.10870 -14.74987 -14.52000 -14.31906 -14.19471 -13.97646 -13.56546 -13.51274 -13.22901 -13.00119 -12.81022 -12.58299 -12.51224 -12.18941 -11.90108 -11.83393 -11.60418 -11.48156 -11.21100 -11.06362 -11.01794 -10.84677 -10.67780 -10.33067 -10.24722 -10.08507 -9.91785 -9.55837 -9.08903 -9.00485 -8.79524 -8.71956 -8.55741 -6.76073 -5.86127 -3.29438 0.35120 1.26313 1.69206 2.23833 3.23943 3.27543 3.33005 3.40728 3.42318 4.22487 4.31696 4.42166 4.63158 4.85600 4.86704 5.03310 5.12434 5.19095 5.32423 5.33129 5.43517 5.45038 5.49434 5.54218 5.66127 5.77675 5.80495 5.90037 5.92286 5.95182 6.00856 6.09172 6.12238 6.17651 6.28695 6.42160 6.53592 6.64694 6.73609 6.80742 7.05524 7.44766 7.58601 7.69652 7.85828 8.25681 8.31206 9.08961 9.72179 10.29383 11.21931 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019621 B = 0.002595 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.694360 B =10787.219237 C =11107.801748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.197 4.197 4 C -0.153 4.153 5 C -0.057 4.057 6 C -0.260 4.260 7 C 0.585 3.415 8 O -0.534 6.534 9 N -0.712 5.712 10 C 0.140 3.860 11 C 0.078 3.922 12 C -0.163 4.163 13 C 0.160 3.840 14 N -0.591 5.591 15 C -0.254 4.254 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.384 6.384 26 S 0.202 5.798 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.142 0.858 33 H 0.153 0.847 34 H 0.399 0.601 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.030 0.970 42 H 0.255 0.745 43 H 0.026 0.974 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.105 -20.653 10.038 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.316 4.316 4 C -0.184 4.184 5 C -0.090 4.090 6 C -0.381 4.381 7 C 0.370 3.630 8 O -0.412 6.412 9 N -0.363 5.363 10 C 0.017 3.983 11 C 0.037 3.963 12 C -0.220 4.220 13 C 0.033 3.967 14 N -0.314 5.314 15 C -0.383 4.383 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.216 1.216 23 C -0.017 4.017 24 C -0.032 4.032 25 O -0.304 6.304 26 S 0.470 5.530 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.160 0.840 33 H 0.170 0.830 34 H 0.235 0.765 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.048 0.952 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.872 -20.198 9.145 22.936 hybrid contribution -0.655 0.744 0.647 1.184 sum -6.527 -19.454 9.792 22.737 Atomic orbital electron populations 1.21807 0.94053 1.02153 1.02688 1.20147 0.96378 0.89409 1.03508 1.24265 1.07355 1.02096 0.97912 1.19937 1.04759 0.94190 0.99494 1.20740 0.96790 0.96204 0.95229 1.24674 1.15929 0.99398 0.98050 1.16962 0.77985 0.85579 0.82473 1.90831 1.49594 1.42731 1.58088 1.45863 1.67276 1.17288 1.05849 1.21424 1.00968 0.84409 0.91537 1.22559 0.90022 0.92185 0.91573 1.22217 0.96274 1.00261 1.03261 1.21305 1.00267 0.91458 0.83669 1.44019 1.58903 1.27028 1.01475 1.19192 1.33637 0.89616 0.95827 0.91356 1.25041 0.99899 0.96333 0.98285 1.70019 1.42483 1.16130 1.25882 0.86228 0.80764 0.80492 0.79327 1.20257 1.21451 1.21646 1.21597 0.94592 0.88178 0.97369 1.23045 1.00222 0.98378 0.81576 1.87815 1.65643 1.54928 1.22004 1.83079 1.59807 1.02551 1.07544 0.92293 0.91884 0.92172 0.90584 0.89846 0.83995 0.82979 0.76549 0.90521 0.89748 0.94058 0.91777 0.90668 0.88474 0.95161 0.93452 0.95628 0.92030 0.93362 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.15 0.37 -0.48 16 2 C -0.06 -0.34 6.36 -27.89 -0.18 -0.52 16 3 C -0.20 -1.73 5.53 -35.86 -0.20 -1.93 16 4 C -0.15 -1.41 10.00 -41.41 -0.41 -1.83 16 5 C -0.06 -0.65 10.01 -40.44 -0.40 -1.06 16 6 C -0.26 -3.39 6.45 -36.79 -0.24 -3.62 16 7 C 0.58 9.41 7.78 -12.89 -0.10 9.31 16 8 O -0.53 -10.33 16.84 5.19 0.09 -10.24 16 9 N -0.71 -10.99 5.15 -61.65 -0.32 -11.30 16 10 C 0.14 2.46 4.82 -4.04 -0.02 2.44 16 11 C 0.08 1.45 0.76 -90.47 -0.07 1.38 16 12 C -0.16 -2.79 7.92 37.16 0.29 -2.49 16 13 C 0.16 3.70 4.12 -3.49 -0.01 3.69 16 14 N -0.59 -14.27 2.57 -171.77 -0.44 -14.71 16 15 C -0.25 -6.69 9.65 -15.06 -0.15 -6.83 16 16 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 17 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 18 N -0.90 -25.56 11.14 55.49 0.62 -24.94 16 19 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.11 2.22 6.73 -3.53 -0.02 2.19 16 24 C 0.05 0.78 6.60 37.31 0.25 1.03 16 25 O -0.38 -7.07 9.97 -35.23 -0.35 -7.43 16 26 S 0.20 2.03 22.10 -107.50 -2.38 -0.35 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.40 5.54 6.32 -40.82 -0.26 5.28 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.04 0.60 6.88 -51.93 -0.36 0.24 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.39 6.11 -51.93 -0.32 1.08 16 40 H 0.10 2.48 6.14 -51.93 -0.32 2.16 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 45 H 0.05 0.80 6.25 -51.93 -0.32 0.47 16 46 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -30.97 381.78 -10.07 -41.04 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.03 Total: 4.76 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -0.98 Total: 1.27 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.14 Total: -50.95 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.26 Total: -17.66 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.38 Total: -0.35 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.97 -10.07 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108058073.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.911 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds