Wall clock time and date at job start Tue Mar 31 2020 20:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47339 * 2 1 4 4 C 1.33817 * 124.52376 * 90.00044 * 3 2 1 5 5 C 1.37479 * 115.09798 * 179.74810 * 4 3 2 6 6 C 1.36641 * 113.29781 * 0.49663 * 5 4 3 7 7 C 1.46589 * 125.45958 * 179.80025 * 6 5 4 8 8 O 1.21700 * 119.99441 * 359.71510 * 7 6 5 9 9 N 1.34773 * 120.00128 * 179.71819 * 7 6 5 10 10 C 1.46494 * 120.00181 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47496 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.55516 * 60.12496 * 11 10 9 13 13 C 1.53292 * 109.51189 * 180.25345 * 11 10 9 14 14 N 1.47233 * 108.40299 * 172.22959 * 13 11 10 15 15 C 1.36938 * 121.03150 * 129.45891 * 14 13 11 16 16 H 1.07995 * 120.00241 * 206.17702 * 15 14 13 17 17 C 1.38816 * 119.99718 * 26.17954 * 15 14 13 18 18 N 1.31615 * 120.00526 * 16.89599 * 17 15 14 19 19 Si 1.86806 * 119.99896 * 196.89669 * 17 15 14 20 20 H 1.48504 * 109.46919 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47372 * 119.99555 * 19 17 15 22 22 H 1.48500 * 109.47051 * 240.00016 * 19 17 15 23 23 C 1.47151 * 117.98790 * 309.48233 * 14 13 11 24 24 C 1.53300 * 108.41429 * 50.51917 * 23 14 13 25 25 O 1.42962 * 109.22183 * 307.68047 * 24 23 14 26 26 S 1.70615 * 124.52064 * 270.02493 * 3 2 1 27 27 H 1.08997 * 109.47276 * 59.99659 * 1 2 3 28 28 H 1.09000 * 109.47756 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46932 * 299.99918 * 1 2 3 30 30 H 1.09000 * 109.47082 * 239.99338 * 2 1 3 31 31 H 1.09005 * 109.47109 * 120.00038 * 2 1 3 32 32 H 1.08000 * 122.44962 * 0.04091 * 4 3 2 33 33 H 1.07998 * 123.35107 * 180.29136 * 5 4 3 34 34 H 0.97006 * 120.00217 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.47543 * 59.99407 * 10 9 7 36 36 H 1.09002 * 109.46900 * 300.00200 * 10 9 7 37 37 H 1.09005 * 109.47000 * 299.87605 * 12 11 10 38 38 H 1.09000 * 109.46959 * 59.86855 * 12 11 10 39 39 H 1.09000 * 109.47652 * 179.87596 * 12 11 10 40 40 H 1.09001 * 109.68446 * 291.94465 * 13 11 10 41 41 H 1.08991 * 109.68807 * 52.50281 * 13 11 10 42 42 H 0.97002 * 120.00383 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.67883 * 290.77953 * 23 14 13 44 44 H 1.08994 * 109.68171 * 170.26092 * 23 14 13 45 45 H 1.09004 * 109.51066 * 67.60375 * 24 23 14 46 46 H 1.09001 * 109.51236 * 187.70563 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2852 2.1358 1.1025 5 6 2.7424 3.4126 0.8774 6 6 2.8456 3.7236 -0.4492 7 6 3.2995 5.0089 -0.9885 8 8 3.6177 5.9078 -0.2322 9 7 3.3644 5.1952 -2.3217 10 6 3.8185 6.4794 -2.8606 11 6 3.7993 6.4264 -4.3896 12 6 2.3750 6.1490 -4.8745 13 6 4.2804 7.7678 -4.9545 14 7 4.4316 7.6307 -6.4126 15 6 3.8651 8.5364 -7.2693 16 1 3.6078 8.2402 -8.2755 17 6 3.6217 9.8353 -6.8445 18 7 4.2181 10.2979 -5.7663 19 14 2.4474 10.9269 -7.8032 20 1 1.9122 10.1760 -8.9672 21 1 1.3258 11.3410 -6.9226 22 1 3.1713 12.1318 -8.2825 23 6 5.2098 6.4904 -6.9219 24 6 4.6834 5.2112 -6.2611 25 8 4.6690 5.3860 -4.8423 26 16 2.3541 2.3325 -1.4057 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.1449 1.7373 2.0965 33 1 2.9919 4.1023 1.6701 34 1 3.1111 4.4786 -2.9245 35 1 4.8335 6.6792 -2.5171 36 1 3.1556 7.2730 -2.5158 37 1 2.0352 5.1930 -4.4761 38 1 1.7125 6.9426 -4.5289 39 1 2.3623 6.1138 -5.9639 40 1 3.5473 8.5436 -4.7331 41 1 5.2398 8.0309 -4.5092 42 1 4.0476 11.2054 -5.4692 43 1 6.2628 6.6248 -6.6746 44 1 5.0928 6.4198 -8.0033 45 1 3.6719 5.0091 -6.6134 46 1 5.3327 4.3745 -6.5190 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108058073.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:39 Heat of formation + Delta-G solvation = -50.067496 kcal Electronic energy + Delta-G solvation = -27327.946580 eV Core-core repulsion = 23537.044487 eV Total energy + Delta-G solvation = -3790.902093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.21836 -40.30857 -38.85638 -36.56947 -35.96791 -34.67010 -33.31730 -33.18223 -30.04286 -29.56865 -28.08097 -27.44590 -25.81099 -24.98930 -23.32948 -23.07594 -22.26270 -20.71399 -20.05821 -18.97125 -18.92020 -17.52792 -17.28358 -16.94001 -16.70663 -16.28862 -16.17559 -15.81023 -15.60296 -15.30936 -15.20751 -14.96849 -14.73810 -14.56353 -14.38229 -14.04034 -13.76382 -13.49052 -13.27776 -13.19433 -12.94716 -12.82684 -12.79366 -12.55842 -12.43878 -12.40683 -12.11981 -12.06574 -11.97682 -11.85349 -11.67525 -11.33234 -11.09921 -10.77711 -10.51276 -10.31430 -9.65152 -9.54180 -8.72536 -7.89844 -5.36472 -0.52538 0.44558 0.89765 1.37444 1.45154 1.47645 1.57495 1.99406 2.13246 2.48072 2.76376 3.24850 3.48043 3.69108 3.76977 3.92051 3.99198 4.08050 4.15805 4.34533 4.40875 4.42470 4.45681 4.49636 4.53480 4.60113 4.70137 4.75976 4.81467 4.92940 4.94067 5.02993 5.06630 5.10223 5.14698 5.19283 5.21411 5.23638 5.33608 5.36731 5.43760 5.52478 5.61837 6.28637 6.34967 6.36857 7.02475 7.06596 7.75815 8.30090 9.16162 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019621 B = 0.002595 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.694360 B =10787.219237 C =11107.801748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.057 4.057 3 C -0.180 4.180 4 C -0.162 4.162 5 C -0.051 4.051 6 C -0.303 4.303 7 C 0.584 3.416 8 O -0.578 6.578 9 N -0.703 5.703 10 C 0.149 3.851 11 C 0.094 3.906 12 C -0.154 4.154 13 C 0.168 3.832 14 N -0.607 5.607 15 C -0.257 4.257 16 H 0.075 0.925 17 C -0.051 4.051 18 N -0.937 5.937 19 Si 0.966 3.034 20 H -0.263 1.263 21 H -0.291 1.291 22 H -0.295 1.295 23 C 0.102 3.898 24 C 0.052 3.948 25 O -0.386 6.386 26 S 0.228 5.772 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.168 0.832 33 H 0.147 0.853 34 H 0.409 0.591 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.068 0.932 41 H -0.006 1.006 42 H 0.250 0.750 43 H 0.012 0.988 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.675 -24.313 9.660 27.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.300 4.300 4 C -0.191 4.191 5 C -0.086 4.086 6 C -0.423 4.423 7 C 0.372 3.628 8 O -0.460 6.460 9 N -0.354 5.354 10 C 0.024 3.976 11 C 0.053 3.947 12 C -0.212 4.212 13 C 0.041 3.959 14 N -0.331 5.331 15 C -0.386 4.386 16 H 0.092 0.908 17 C -0.246 4.246 18 N -0.583 5.583 19 Si 0.794 3.206 20 H -0.187 1.187 21 H -0.218 1.218 22 H -0.223 1.223 23 C -0.024 4.024 24 C -0.026 4.026 25 O -0.306 6.306 26 S 0.496 5.504 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.186 0.814 33 H 0.165 0.835 34 H 0.246 0.754 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.012 0.988 42 H 0.059 0.941 43 H 0.030 0.970 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.446 -23.917 8.728 26.527 hybrid contribution -0.117 1.759 0.765 1.922 sum -7.564 -22.158 9.494 25.265 Atomic orbital electron populations 1.21815 0.93479 1.03140 1.02251 1.20322 0.96717 0.87600 1.04966 1.24733 1.05094 1.03060 0.97144 1.20116 1.04841 0.93175 1.00988 1.20947 0.95772 0.97164 0.94679 1.24415 1.19193 0.99428 0.99265 1.17391 0.76978 0.86360 0.82052 1.90796 1.51662 1.44602 1.58944 1.45669 1.67119 1.16546 1.06069 1.21123 0.99937 0.85528 0.90990 1.22187 0.91015 0.89745 0.91790 1.22123 0.94696 1.01738 1.02599 1.21056 0.97686 0.93441 0.83719 1.44270 1.59564 1.27714 1.01534 1.19538 1.32827 0.90008 0.96261 0.90750 1.25795 1.01600 0.97807 0.99413 1.70185 1.44225 1.16149 1.27726 0.85228 0.78511 0.78488 0.78359 1.18676 1.21755 1.22269 1.21821 0.93575 0.88481 0.98486 1.23138 1.01710 0.97461 0.80249 1.87827 1.65637 1.54065 1.23063 1.82907 1.59102 1.00890 1.07458 0.92991 0.90256 0.92400 0.89521 0.88034 0.81445 0.83491 0.75382 0.92337 0.90533 0.90824 0.92447 0.91573 0.91356 0.98829 0.94076 0.96968 0.90833 0.91996 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 71.98 0.71 -0.47 16 2 C -0.06 -0.49 6.36 29.85 0.19 -0.30 16 3 C -0.18 -2.62 5.53 24.68 0.14 -2.49 16 4 C -0.16 -2.58 10.00 21.08 0.21 -2.37 16 5 C -0.05 -1.14 10.01 21.72 0.22 -0.92 16 6 C -0.30 -7.70 6.45 24.08 0.16 -7.55 16 7 C 0.58 19.13 7.78 86.42 0.67 19.80 16 8 O -0.58 -23.39 16.84 -4.35 -0.07 -23.47 16 9 N -0.70 -21.66 5.15 -467.18 -2.41 -24.06 16 10 C 0.15 5.41 4.82 86.38 0.42 5.82 16 11 C 0.09 3.52 0.76 -10.70 -0.01 3.51 16 12 C -0.15 -5.11 7.92 71.98 0.57 -4.54 16 13 C 0.17 8.12 4.12 86.34 0.36 8.48 16 14 N -0.61 -29.73 2.57 -697.35 -1.79 -31.52 16 15 C -0.26 -13.63 9.65 84.03 0.81 -12.82 16 16 H 0.07 3.80 7.88 -2.91 -0.02 3.77 16 17 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 18 N -0.94 -55.33 11.14 21.65 0.24 -55.09 16 19 Si 0.97 44.17 29.59 68.60 2.03 46.20 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 23 C 0.10 4.06 6.73 86.36 0.58 4.65 16 24 C 0.05 1.64 6.60 72.08 0.48 2.11 16 25 O -0.39 -13.73 9.97 -148.98 -1.49 -15.21 16 26 S 0.23 4.05 22.10 -56.49 -1.25 2.80 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 34 H 0.41 10.78 6.32 -92.70 -0.59 10.19 16 35 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 36 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 37 H 0.07 1.95 6.88 -2.38 -0.02 1.93 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 2.33 6.11 -2.39 -0.01 2.32 16 40 H 0.07 3.69 6.14 -2.39 -0.01 3.68 16 41 H -0.01 -0.35 8.14 -2.39 -0.02 -0.36 16 42 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 43 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.07 2.72 7.96 -2.39 -0.02 2.71 16 45 H 0.06 1.84 6.25 -2.39 -0.01 1.82 16 46 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -69.80 381.78 1.58 -68.22 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.40 Total: 21.60 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 5.92 Total: 10.54 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -3.96 Total: -110.67 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -1.56 Total: -38.68 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.25 Total: 2.80 kcal Total: -69.80 1.58 -68.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108058073.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.148 kcal (2) G-P(sol) polarization free energy of solvation -69.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds