Wall clock time and date at job start Tue Mar 31 2020 20:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.47004 * 2 1 4 4 C 1.33812 * 124.52548 * 89.99461 * 3 2 1 5 5 C 1.37468 * 115.10431 * 180.02562 * 4 3 2 6 6 C 1.36654 * 113.29420 * 0.02562 * 5 4 3 7 7 C 1.46583 * 125.45415 * 179.97438 * 6 5 4 8 8 O 1.21697 * 120.00141 * 43.34883 * 7 6 5 9 9 N 1.34775 * 119.99602 * 223.34560 * 7 6 5 10 10 C 1.47145 * 120.98740 * 356.36603 * 9 7 6 11 11 C 1.53293 * 108.38911 * 129.48287 * 10 9 7 12 12 O 1.42968 * 109.21820 * 52.30794 * 11 10 9 13 13 C 1.42969 * 114.16461 * 297.41899 * 12 11 10 14 14 H 1.09004 * 109.51215 * 302.60485 * 13 12 11 15 15 C 1.52995 * 109.50993 * 182.50522 * 13 12 11 16 16 H 1.09008 * 109.47048 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47120 * 60.00130 * 15 13 12 18 18 N 1.46497 * 109.47500 * 300.00155 * 15 13 12 19 19 C 1.36941 * 120.00134 * 205.00387 * 18 15 13 20 20 H 1.07999 * 119.99970 * 359.97438 * 19 18 15 21 21 C 1.38814 * 119.99580 * 179.97438 * 19 18 15 22 22 N 1.31611 * 120.00200 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99460 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47292 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46950 * 120.00108 * 23 21 19 26 26 H 1.48504 * 109.46941 * 240.00087 * 23 21 19 27 27 C 1.47155 * 120.97922 * 176.39243 * 9 7 6 28 28 S 1.70621 * 124.52034 * 270.26883 * 3 2 1 29 29 H 1.09001 * 109.47066 * 60.00398 * 1 2 3 30 30 H 1.09008 * 109.46947 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47452 * 300.00231 * 1 2 3 32 32 H 1.08993 * 109.47136 * 239.99710 * 2 1 3 33 33 H 1.09001 * 109.47066 * 119.99602 * 2 1 3 34 34 H 1.08006 * 122.44835 * 0.02749 * 4 3 2 35 35 H 1.07999 * 123.35783 * 179.97438 * 5 4 3 36 36 H 1.09005 * 109.68095 * 9.76589 * 10 9 7 37 37 H 1.09001 * 109.71903 * 249.23510 * 10 9 7 38 38 H 1.08999 * 109.51263 * 292.38673 * 11 10 9 39 39 H 1.08995 * 109.56028 * 172.25146 * 11 10 9 40 40 H 1.08999 * 109.47276 * 60.00268 * 17 15 13 41 41 H 1.08999 * 109.47162 * 299.99814 * 17 15 13 42 42 H 1.09008 * 109.47159 * 179.97438 * 17 15 13 43 43 H 0.96997 * 119.99813 * 24.99384 * 18 15 13 44 44 H 0.97001 * 119.99713 * 179.97438 * 22 21 19 45 45 H 1.08997 * 109.68541 * 110.79140 * 27 9 7 46 46 H 1.09003 * 109.68346 * 350.23113 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2850 2.1359 1.1024 5 6 2.7366 3.4147 0.8774 6 6 2.8449 3.7239 -0.4493 7 6 3.2981 5.0095 -0.9884 8 8 4.2625 5.5682 -0.4999 9 7 2.6466 5.5726 -2.0252 10 6 1.5278 4.8795 -2.6834 11 6 0.3417 5.8470 -2.7670 12 8 0.7733 7.0698 -3.3690 13 6 1.7740 7.7677 -2.6238 14 1 1.4016 7.9766 -1.6208 15 6 2.1109 9.0835 -3.3281 16 1 2.8737 9.6153 -2.7591 17 6 0.8519 9.9475 -3.4240 18 7 2.6135 8.8017 -4.6750 19 6 3.4366 9.6998 -5.3005 20 1 3.7148 10.6161 -4.8011 21 6 3.9132 9.4324 -6.5766 22 7 3.5745 8.3156 -7.1850 23 14 5.0364 10.6573 -7.4296 24 1 5.2645 11.8234 -6.5389 25 1 6.3355 10.0068 -7.7368 26 1 4.4016 11.1156 -8.6914 27 6 3.0335 6.8985 -2.5328 28 16 2.3484 2.3347 -1.4058 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.1446 1.7375 2.0965 35 1 2.9805 4.1064 1.6701 36 1 1.2457 4.0024 -2.1009 37 1 1.8238 4.5739 -3.6869 38 1 -0.0355 6.0481 -1.7643 39 1 -0.4493 5.4031 -3.3714 40 1 0.4780 10.1573 -2.4219 41 1 0.0889 9.4160 -3.9927 42 1 1.0920 10.8852 -3.9255 43 1 2.3635 7.9789 -5.1236 44 1 3.9073 8.1290 -8.0768 45 1 3.4815 6.7969 -3.5212 46 1 3.7484 7.3585 -1.8506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485641012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:07 Heat of formation + Delta-G solvation = -51.568327 kcal Electronic energy + Delta-G solvation = -27521.407867 eV Core-core repulsion = 23730.440693 eV Total energy + Delta-G solvation = -3790.967174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.55994 -39.84957 -38.79047 -37.13224 -35.87238 -34.68967 -34.17280 -31.86674 -30.33412 -30.06435 -28.62864 -26.40099 -25.73771 -25.02169 -23.81308 -23.24545 -21.75977 -21.20628 -19.65479 -19.33644 -19.07166 -17.72027 -17.36260 -17.16724 -16.81192 -16.31454 -16.23742 -15.83530 -15.76993 -15.22755 -15.09964 -14.96758 -14.74552 -14.51247 -14.29038 -14.06986 -13.82250 -13.54563 -13.38948 -13.17108 -13.07311 -12.80926 -12.69593 -12.57052 -12.50517 -12.40916 -12.13292 -12.09054 -11.85595 -11.69176 -11.68146 -11.57034 -11.20836 -11.06950 -10.95399 -9.83249 -9.61174 -9.44897 -8.94881 -7.89517 -5.16616 -0.47491 0.29975 0.85960 1.38651 1.47945 1.48354 1.57938 1.63775 1.95909 2.57890 2.75346 3.34780 3.44277 3.64768 3.72896 3.89301 3.90735 3.96846 4.07628 4.14528 4.24169 4.25275 4.34370 4.43039 4.46993 4.48194 4.59585 4.70230 4.75604 4.80584 4.83145 4.92065 4.96181 5.05340 5.08823 5.11102 5.18629 5.21060 5.24552 5.37162 5.43379 5.54909 5.61059 6.12997 6.21811 6.32810 6.83816 7.39521 8.15072 8.40666 9.33896 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018857 B = 0.002732 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.516153 B =10248.270320 C =10397.336068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.057 4.057 3 C -0.190 4.190 4 C -0.156 4.156 5 C -0.054 4.054 6 C -0.302 4.302 7 C 0.586 3.414 8 O -0.575 6.575 9 N -0.605 5.605 10 C 0.058 3.942 11 C 0.047 3.953 12 O -0.380 6.380 13 C 0.093 3.907 14 H 0.079 0.921 15 C 0.173 3.827 16 H 0.060 0.940 17 C -0.148 4.148 18 N -0.726 5.726 19 C -0.233 4.233 20 H 0.075 0.925 21 C -0.076 4.076 22 N -0.966 5.966 23 Si 0.967 3.033 24 H -0.267 1.267 25 H -0.298 1.298 26 H -0.295 1.295 27 C 0.096 3.904 28 S 0.231 5.769 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.168 0.832 35 H 0.149 0.851 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.133 0.867 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.039 0.961 43 H 0.378 0.622 44 H 0.248 0.752 45 H 0.063 0.937 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.635 -18.754 18.158 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.096 4.096 3 C -0.310 4.310 4 C -0.185 4.185 5 C -0.088 4.088 6 C -0.421 4.421 7 C 0.375 3.625 8 O -0.456 6.456 9 N -0.337 5.337 10 C -0.065 4.065 11 C -0.030 4.030 12 O -0.298 6.298 13 C 0.034 3.966 14 H 0.096 0.904 15 C 0.064 3.936 16 H 0.078 0.922 17 C -0.208 4.208 18 N -0.367 5.367 19 C -0.365 4.365 20 H 0.093 0.907 21 C -0.268 4.268 22 N -0.618 5.618 23 Si 0.797 3.203 24 H -0.191 1.191 25 H -0.225 1.225 26 H -0.222 1.222 27 C -0.027 4.027 28 S 0.500 5.500 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.186 0.814 35 H 0.166 0.834 36 H 0.134 0.866 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.151 0.849 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.210 0.790 44 H 0.057 0.943 45 H 0.081 0.919 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.205 -18.531 16.664 26.930 hybrid contribution 1.150 0.803 0.693 1.565 sum -9.055 -17.728 17.357 26.411 Atomic orbital electron populations 1.21812 0.93208 1.03126 1.02440 1.20306 0.96938 0.87654 1.04711 1.24833 1.05413 1.03112 0.97607 1.20088 1.04560 0.92948 1.00930 1.20866 0.96396 0.97426 0.94087 1.24284 1.18987 0.99433 0.99415 1.17526 0.81817 0.84168 0.78991 1.90793 1.28180 1.65285 1.61353 1.48143 1.34096 1.19262 1.32166 1.23032 0.87115 0.97210 0.99170 1.23161 0.95477 0.84184 1.00153 1.88075 1.56664 1.35780 1.49304 1.22645 0.86899 0.91786 0.95295 0.90367 1.20501 0.94894 0.91841 0.86332 0.92232 1.22168 0.98326 0.99341 1.00946 1.42500 1.56751 1.23124 1.14346 1.19653 1.19569 0.99844 0.97413 0.90663 1.25468 1.03380 0.99422 0.98519 1.69831 1.50857 1.26500 1.14568 0.85162 0.78091 0.78747 0.78323 1.19125 1.22510 1.22241 1.22152 0.98334 0.82474 0.99733 1.83208 1.59032 1.00399 1.07330 0.92739 0.90447 0.92171 0.89892 0.88234 0.81424 0.83356 0.86557 0.90290 0.91430 0.84911 0.91380 0.93487 0.94195 0.78953 0.94296 0.91897 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 71.98 0.71 -0.34 16 2 C -0.06 -0.48 6.37 29.85 0.19 -0.29 16 3 C -0.19 -2.68 5.53 24.68 0.14 -2.54 16 4 C -0.16 -2.34 9.99 21.08 0.21 -2.13 16 5 C -0.05 -1.13 10.23 21.72 0.22 -0.90 16 6 C -0.30 -7.56 5.54 24.08 0.13 -7.43 16 7 C 0.59 19.46 7.56 86.42 0.65 20.11 16 8 O -0.57 -23.61 16.56 -4.34 -0.07 -23.68 16 9 N -0.60 -19.24 3.02 -822.17 -2.48 -21.73 16 10 C 0.06 1.43 5.99 86.35 0.52 1.94 16 11 C 0.05 1.11 6.99 72.08 0.50 1.61 16 12 O -0.38 -12.68 9.22 -148.98 -1.37 -14.06 16 13 C 0.09 3.19 2.53 30.69 0.08 3.26 16 14 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 15 C 0.17 6.93 2.73 44.99 0.12 7.05 16 16 H 0.06 2.38 8.08 -2.38 -0.02 2.36 16 17 C -0.15 -5.33 9.35 71.98 0.67 -4.66 16 18 N -0.73 -36.78 4.29 -322.94 -1.38 -38.16 16 19 C -0.23 -12.99 9.93 84.03 0.83 -12.16 16 20 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 22 N -0.97 -59.92 13.06 21.65 0.28 -59.64 16 23 Si 0.97 47.18 29.55 68.60 2.03 49.21 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 26 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 27 C 0.10 3.58 5.85 86.35 0.51 4.09 16 28 S 0.23 4.20 19.74 -56.49 -1.12 3.09 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.12 2.26 4.13 -15.97 -0.07 2.20 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.05 1.77 7.68 -2.39 -0.02 1.75 16 42 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.38 20.87 7.20 -92.71 -0.67 20.21 16 44 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 45 H 0.06 2.81 7.26 -2.39 -0.02 2.80 16 46 H 0.08 3.31 7.11 -2.39 -0.02 3.29 16 Total: -1.00 -73.30 384.01 2.10 -71.19 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.26 Total: 30.10 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 5.96 Total: 3.68 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -3.58 Total: -119.53 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -1.45 Total: -37.74 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.12 Total: 3.09 kcal Total: -73.30 2.10 -71.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485641012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.624 kcal (2) G-P(sol) polarization free energy of solvation -73.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds