Wall clock time and date at job start Tue Mar 31 2020 20:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47254 * 2 1 4 4 C 1.33815 * 124.52403 * 89.99779 * 3 2 1 5 5 C 1.37478 * 115.09922 * 180.02562 * 4 3 2 6 6 C 1.36650 * 113.29556 * 359.97438 * 5 4 3 7 7 C 1.46584 * 125.45575 * 179.97438 * 6 5 4 8 8 O 1.21700 * 119.99950 * 333.49964 * 7 6 5 9 9 N 1.34771 * 120.00128 * 153.50787 * 7 6 5 10 10 C 1.47153 * 120.98358 * 353.49243 * 9 7 6 11 11 C 1.53292 * 108.38853 * 230.56501 * 10 9 7 12 12 O 1.42965 * 109.22156 * 307.69406 * 11 10 9 13 13 C 1.42959 * 114.16323 * 62.58019 * 12 11 10 14 14 H 1.08998 * 109.55258 * 57.37221 * 13 12 11 15 15 C 1.53005 * 109.51023 * 177.49437 * 13 12 11 16 16 H 1.09011 * 109.46941 * 184.74539 * 15 13 12 17 17 C 1.52991 * 109.47194 * 304.74714 * 15 13 12 18 18 N 1.46499 * 109.47068 * 64.75169 * 15 13 12 19 19 C 1.36932 * 120.00345 * 154.99606 * 18 15 13 20 20 H 1.08004 * 119.99815 * 0.02562 * 19 18 15 21 21 C 1.38813 * 120.00355 * 180.27260 * 19 18 15 22 22 N 1.31618 * 119.99719 * 359.72615 * 21 19 18 23 23 Si 1.86796 * 120.00237 * 179.72886 * 21 19 18 24 24 H 1.48500 * 109.47385 * 59.99908 * 23 21 19 25 25 H 1.48502 * 109.47280 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46873 * 299.99905 * 23 21 19 27 27 C 1.47148 * 120.98619 * 173.52227 * 9 7 6 28 28 S 1.70621 * 124.51886 * 270.26576 * 3 2 1 29 29 H 1.09008 * 109.46597 * 60.00379 * 1 2 3 30 30 H 1.08997 * 109.47527 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47358 * 300.00594 * 1 2 3 32 32 H 1.08999 * 109.46902 * 239.99147 * 2 1 3 33 33 H 1.09008 * 109.46597 * 119.99621 * 2 1 3 34 34 H 1.07995 * 122.45108 * 0.02562 * 4 3 2 35 35 H 1.07991 * 123.35131 * 179.97438 * 5 4 3 36 36 H 1.09005 * 109.67883 * 350.28538 * 10 9 7 37 37 H 1.09000 * 109.68232 * 110.80065 * 10 9 7 38 38 H 1.08999 * 109.51410 * 67.62147 * 11 10 9 39 39 H 1.09008 * 109.51222 * 187.77610 * 11 10 9 40 40 H 1.09006 * 109.47137 * 60.00501 * 17 15 13 41 41 H 1.09006 * 109.47079 * 179.97438 * 17 15 13 42 42 H 1.08997 * 109.47581 * 299.99525 * 17 15 13 43 43 H 0.97006 * 120.00002 * 334.99850 * 18 15 13 44 44 H 0.97002 * 119.99866 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.67987 * 9.71345 * 27 9 7 46 46 H 1.09004 * 109.68564 * 249.16417 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1358 1.1025 5 6 2.7368 3.4146 0.8774 6 6 2.8461 3.7234 -0.4493 7 6 3.2995 5.0089 -0.9885 8 8 3.1593 6.0262 -0.3355 9 7 3.8715 5.0641 -2.2076 10 6 4.1809 3.8353 -2.9556 11 6 5.6406 3.9055 -3.4186 12 8 5.8570 5.1395 -4.1073 13 6 5.6642 6.3026 -3.2989 14 1 6.3240 6.2581 -2.4324 15 6 5.9824 7.5540 -4.1197 16 1 5.9169 8.4344 -3.4802 17 6 7.3971 7.4428 -4.6913 18 7 5.0201 7.6755 -5.2177 19 6 4.7548 8.9033 -5.7629 20 1 5.2552 9.7821 -5.3837 21 6 3.8388 9.0192 -6.7994 22 7 3.2293 7.9482 -7.2619 23 14 3.4712 10.6951 -7.5380 24 1 4.7194 11.2748 -8.0958 25 1 2.4656 10.5490 -8.6210 26 1 2.9359 11.5939 -6.4840 27 6 4.2057 6.3551 -2.8298 28 16 2.3486 2.3345 -1.4058 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.1447 1.7374 2.0964 35 1 2.9808 4.1063 1.6700 36 1 4.0418 2.9679 -2.3103 37 1 3.5238 3.7575 -3.8218 38 1 6.3002 3.8514 -2.5525 39 1 5.8502 3.0724 -4.0896 40 1 7.4625 6.5625 -5.3309 41 1 7.6236 8.3342 -5.2765 42 1 8.1131 7.3525 -3.8745 43 1 4.5709 6.8862 -5.5585 44 1 2.5890 8.0292 -7.9859 45 1 4.0830 7.1564 -2.1011 46 1 3.5515 6.5314 -3.6837 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485641013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:10 Heat of formation + Delta-G solvation = -29.810830 kcal Electronic energy + Delta-G solvation = -27497.283815 eV Core-core repulsion = 23707.260117 eV Total energy + Delta-G solvation = -3790.023698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.30138 -38.71261 -37.80637 -35.51261 -34.53158 -34.05147 -32.29208 -30.40289 -29.27740 -28.37790 -27.53722 -25.43984 -24.11481 -23.53416 -22.77806 -22.45694 -20.65613 -19.68695 -18.59469 -18.16628 -17.29967 -16.42377 -16.22224 -15.91785 -15.61850 -15.08479 -14.87744 -14.64260 -14.48129 -14.29509 -14.05570 -13.56977 -13.37699 -13.22167 -13.18441 -12.94451 -12.77189 -12.33282 -12.20985 -11.91913 -11.85799 -11.80698 -11.49793 -11.35682 -11.20716 -10.92615 -10.80664 -10.76667 -10.44866 -10.31082 -10.10341 -9.87494 -9.81384 -9.55893 -8.92237 -8.88571 -8.64656 -8.36274 -6.91323 -5.72317 -3.00708 0.34416 1.21411 1.67245 2.22623 2.87142 3.13732 3.47284 3.51866 3.52396 3.97535 4.31210 4.43936 4.62372 4.63745 4.80857 4.86603 4.95335 5.02230 5.10766 5.17446 5.30425 5.33435 5.39929 5.43575 5.48366 5.52972 5.62305 5.69286 5.75218 5.78105 5.78960 5.86308 5.94697 6.04017 6.15811 6.23765 6.36558 6.42548 6.56422 6.69277 6.81051 7.16609 7.34909 7.47077 7.73753 8.10083 8.45929 9.58094 10.14471 10.51554 11.49930 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016997 B = 0.002808 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.941743 B = 9967.421547 C =10403.187377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.212 4.212 4 C -0.153 4.153 5 C -0.057 4.057 6 C -0.266 4.266 7 C 0.589 3.411 8 O -0.529 6.529 9 N -0.607 5.607 10 C 0.058 3.942 11 C 0.053 3.947 12 O -0.358 6.358 13 C 0.078 3.922 14 H 0.056 0.944 15 C 0.182 3.818 16 H 0.060 0.940 17 C -0.159 4.159 18 N -0.718 5.718 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.286 1.286 27 C 0.087 3.913 28 S 0.224 5.776 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.105 0.895 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.032 0.968 43 H 0.389 0.611 44 H 0.255 0.745 45 H 0.099 0.901 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.251 -19.082 15.477 24.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.331 4.331 4 C -0.183 4.183 5 C -0.090 4.090 6 C -0.386 4.386 7 C 0.376 3.624 8 O -0.408 6.408 9 N -0.341 5.341 10 C -0.067 4.067 11 C -0.026 4.026 12 O -0.276 6.276 13 C 0.018 3.982 14 H 0.074 0.926 15 C 0.072 3.928 16 H 0.078 0.922 17 C -0.219 4.219 18 N -0.360 5.360 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.213 1.213 27 C -0.034 4.034 28 S 0.493 5.507 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.158 0.842 35 H 0.168 0.832 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.123 0.877 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.224 0.776 44 H 0.064 0.936 45 H 0.117 0.883 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.437 -18.639 14.019 23.327 hybrid contribution -0.387 0.786 1.292 1.561 sum -0.824 -17.854 15.311 23.534 Atomic orbital electron populations 1.21810 0.94080 1.02150 1.02701 1.20135 0.96359 0.89472 1.03405 1.24588 1.06933 1.02395 0.99172 1.19899 1.04867 0.94054 0.99486 1.20692 0.97062 0.96212 0.94989 1.24593 1.16326 0.99555 0.98114 1.17000 0.77680 0.86934 0.80742 1.90826 1.56826 1.34847 1.58253 1.48065 1.60640 1.08316 1.17043 1.22871 0.99170 0.87121 0.97550 1.22836 0.93205 0.88960 0.97560 1.88113 1.89733 1.12614 1.37098 1.22933 0.94124 0.87392 0.93728 0.92608 1.20265 0.90516 0.91780 0.90259 0.92174 1.22324 0.97355 1.02162 1.00095 1.42401 1.47625 1.07752 1.38232 1.19193 1.18897 0.86236 1.12683 0.91244 1.24712 0.99740 0.96956 0.99382 1.69658 1.31234 1.27100 1.29923 0.86298 0.77578 0.83840 0.78639 1.21348 1.21800 1.21319 1.22514 0.97575 0.83943 0.99362 1.83366 1.58669 1.01978 1.06652 0.92285 0.91875 0.92202 0.90614 0.89980 0.84185 0.83234 0.89085 0.89487 0.93127 0.87686 0.92459 0.92796 0.94866 0.77613 0.93552 0.88312 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.90 37.16 0.37 -0.52 16 2 C -0.05 -0.34 6.36 -27.88 -0.18 -0.52 16 3 C -0.21 -1.84 5.53 -35.86 -0.20 -2.04 16 4 C -0.15 -1.40 10.00 -41.41 -0.41 -1.82 16 5 C -0.06 -0.65 10.11 -40.43 -0.41 -1.05 16 6 C -0.27 -3.46 5.84 -36.79 -0.21 -3.67 16 7 C 0.59 9.63 7.61 -12.90 -0.10 9.53 16 8 O -0.53 -10.38 16.43 5.19 0.09 -10.30 16 9 N -0.61 -9.53 3.02 -173.85 -0.52 -10.05 16 10 C 0.06 0.72 5.60 -3.53 -0.02 0.70 16 11 C 0.05 0.66 6.98 37.31 0.26 0.92 16 12 O -0.36 -6.04 9.24 -35.23 -0.33 -6.36 16 13 C 0.08 1.34 2.57 -26.58 -0.07 1.27 16 14 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 15 C 0.18 3.64 2.80 -67.93 -0.19 3.45 16 16 H 0.06 1.20 8.08 -51.92 -0.42 0.78 16 17 C -0.16 -2.96 9.30 37.15 0.35 -2.62 16 18 N -0.72 -17.67 4.24 -53.42 -0.23 -17.89 16 19 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 20 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 23 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.09 1.58 5.84 -3.54 -0.02 1.56 16 28 S 0.22 2.23 19.07 -107.50 -2.05 0.18 16 29 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.09 0.95 4.06 -25.54 -0.10 0.85 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.11 1.05 8.14 -51.92 -0.42 0.63 16 40 H 0.06 1.11 7.57 -51.93 -0.39 0.72 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.39 10.31 7.08 -40.82 -0.29 10.02 16 44 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.10 1.88 7.06 -51.93 -0.37 1.51 16 46 H 0.10 2.13 6.94 -51.93 -0.36 1.77 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -32.47 382.40 -9.63 -42.11 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.97 Total: 8.23 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.08 Total: -1.94 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.03 Total: -55.14 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.24 Total: -16.66 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.05 Total: 0.18 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.47 -9.63 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485641013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.298 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds