Wall clock time and date at job start Tue Mar 31 2020 20:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47254 * 2 1 4 4 C 1.33815 * 124.52403 * 89.99779 * 3 2 1 5 5 C 1.37478 * 115.09922 * 180.02562 * 4 3 2 6 6 C 1.36650 * 113.29556 * 359.97438 * 5 4 3 7 7 C 1.46584 * 125.45575 * 179.97438 * 6 5 4 8 8 O 1.21700 * 119.99950 * 333.49964 * 7 6 5 9 9 N 1.34771 * 120.00128 * 153.50787 * 7 6 5 10 10 C 1.47153 * 120.98358 * 353.49243 * 9 7 6 11 11 C 1.53292 * 108.38853 * 230.56501 * 10 9 7 12 12 O 1.42965 * 109.22156 * 307.69406 * 11 10 9 13 13 C 1.42959 * 114.16323 * 62.58019 * 12 11 10 14 14 H 1.08998 * 109.55258 * 57.37221 * 13 12 11 15 15 C 1.53005 * 109.51023 * 177.49437 * 13 12 11 16 16 H 1.09011 * 109.46941 * 184.74539 * 15 13 12 17 17 C 1.52991 * 109.47194 * 304.74714 * 15 13 12 18 18 N 1.46499 * 109.47068 * 64.75169 * 15 13 12 19 19 C 1.36932 * 120.00345 * 154.99606 * 18 15 13 20 20 H 1.08004 * 119.99815 * 0.02562 * 19 18 15 21 21 C 1.38813 * 120.00355 * 180.27260 * 19 18 15 22 22 N 1.31618 * 119.99719 * 359.72615 * 21 19 18 23 23 Si 1.86796 * 120.00237 * 179.72886 * 21 19 18 24 24 H 1.48500 * 109.47385 * 59.99908 * 23 21 19 25 25 H 1.48502 * 109.47280 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46873 * 299.99905 * 23 21 19 27 27 C 1.47148 * 120.98619 * 173.52227 * 9 7 6 28 28 S 1.70621 * 124.51886 * 270.26576 * 3 2 1 29 29 H 1.09008 * 109.46597 * 60.00379 * 1 2 3 30 30 H 1.08997 * 109.47527 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47358 * 300.00594 * 1 2 3 32 32 H 1.08999 * 109.46902 * 239.99147 * 2 1 3 33 33 H 1.09008 * 109.46597 * 119.99621 * 2 1 3 34 34 H 1.07995 * 122.45108 * 0.02562 * 4 3 2 35 35 H 1.07991 * 123.35131 * 179.97438 * 5 4 3 36 36 H 1.09005 * 109.67883 * 350.28538 * 10 9 7 37 37 H 1.09000 * 109.68232 * 110.80065 * 10 9 7 38 38 H 1.08999 * 109.51410 * 67.62147 * 11 10 9 39 39 H 1.09008 * 109.51222 * 187.77610 * 11 10 9 40 40 H 1.09006 * 109.47137 * 60.00501 * 17 15 13 41 41 H 1.09006 * 109.47079 * 179.97438 * 17 15 13 42 42 H 1.08997 * 109.47581 * 299.99525 * 17 15 13 43 43 H 0.97006 * 120.00002 * 334.99850 * 18 15 13 44 44 H 0.97002 * 119.99866 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.67987 * 9.71345 * 27 9 7 46 46 H 1.09004 * 109.68564 * 249.16417 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1358 1.1025 5 6 2.7368 3.4146 0.8774 6 6 2.8461 3.7234 -0.4493 7 6 3.2995 5.0089 -0.9885 8 8 3.1593 6.0262 -0.3355 9 7 3.8715 5.0641 -2.2076 10 6 4.1809 3.8353 -2.9556 11 6 5.6406 3.9055 -3.4186 12 8 5.8570 5.1395 -4.1073 13 6 5.6642 6.3026 -3.2989 14 1 6.3240 6.2581 -2.4324 15 6 5.9824 7.5540 -4.1197 16 1 5.9169 8.4344 -3.4802 17 6 7.3971 7.4428 -4.6913 18 7 5.0201 7.6755 -5.2177 19 6 4.7548 8.9033 -5.7629 20 1 5.2552 9.7821 -5.3837 21 6 3.8388 9.0192 -6.7994 22 7 3.2293 7.9482 -7.2619 23 14 3.4712 10.6951 -7.5380 24 1 4.7194 11.2748 -8.0958 25 1 2.4656 10.5490 -8.6210 26 1 2.9359 11.5939 -6.4840 27 6 4.2057 6.3551 -2.8298 28 16 2.3486 2.3345 -1.4058 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.1447 1.7374 2.0964 35 1 2.9808 4.1063 1.6700 36 1 4.0418 2.9679 -2.3103 37 1 3.5238 3.7575 -3.8218 38 1 6.3002 3.8514 -2.5525 39 1 5.8502 3.0724 -4.0896 40 1 7.4625 6.5625 -5.3309 41 1 7.6236 8.3342 -5.2765 42 1 8.1131 7.3525 -3.8745 43 1 4.5709 6.8862 -5.5585 44 1 2.5890 8.0292 -7.9859 45 1 4.0830 7.1564 -2.1011 46 1 3.5515 6.5314 -3.6837 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485641013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:09 Heat of formation + Delta-G solvation = -50.122671 kcal Electronic energy + Delta-G solvation = -27498.164603 eV Core-core repulsion = 23707.260117 eV Total energy + Delta-G solvation = -3790.904486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.55594 -39.86022 -38.77663 -37.13967 -35.88835 -34.69443 -34.16316 -31.86482 -30.34761 -30.04592 -28.65828 -26.40457 -25.71088 -25.05308 -23.83516 -23.23223 -21.79129 -21.18652 -19.60993 -19.36255 -19.13278 -17.68689 -17.17703 -17.15615 -16.91568 -16.33235 -16.25949 -15.86958 -15.76793 -15.23604 -15.09035 -14.96715 -14.80548 -14.42153 -14.34275 -14.02025 -13.89922 -13.61108 -13.42281 -13.09484 -13.00509 -12.78662 -12.72649 -12.58709 -12.49539 -12.44327 -12.22274 -12.08898 -11.86050 -11.69141 -11.67496 -11.50715 -11.19951 -11.06049 -10.92975 -9.85678 -9.58865 -9.44178 -8.94986 -7.89305 -5.16509 -0.53631 0.35975 0.87365 1.34696 1.48143 1.50662 1.56177 1.67192 2.01421 2.58438 2.75223 3.35647 3.44424 3.64631 3.72592 3.88028 3.90755 3.97818 4.06104 4.14153 4.23176 4.25239 4.33117 4.40955 4.46123 4.48497 4.60164 4.69655 4.75386 4.79576 4.83424 4.90618 4.96525 5.03745 5.08955 5.09995 5.19043 5.20684 5.25850 5.34545 5.42278 5.54661 5.62161 6.14311 6.21519 6.32362 6.85358 7.39396 8.14394 8.40151 9.33712 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016997 B = 0.002808 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.941743 B = 9967.421547 C =10403.187377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.056 4.056 3 C -0.193 4.193 4 C -0.160 4.160 5 C -0.048 4.048 6 C -0.308 4.308 7 C 0.585 3.415 8 O -0.576 6.576 9 N -0.608 5.608 10 C 0.056 3.944 11 C 0.048 3.952 12 O -0.379 6.379 13 C 0.093 3.907 14 H 0.077 0.923 15 C 0.174 3.826 16 H 0.059 0.941 17 C -0.147 4.147 18 N -0.726 5.726 19 C -0.236 4.236 20 H 0.075 0.925 21 C -0.074 4.074 22 N -0.967 5.967 23 Si 0.968 3.032 24 H -0.279 1.279 25 H -0.298 1.298 26 H -0.282 1.282 27 C 0.097 3.903 28 S 0.242 5.758 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.167 0.833 35 H 0.148 0.852 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.136 0.864 40 H 0.047 0.953 41 H 0.038 0.962 42 H 0.066 0.934 43 H 0.377 0.623 44 H 0.249 0.751 45 H 0.081 0.919 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.403 -21.519 16.813 27.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.095 4.095 3 C -0.312 4.312 4 C -0.189 4.189 5 C -0.082 4.082 6 C -0.428 4.428 7 C 0.375 3.625 8 O -0.458 6.458 9 N -0.340 5.340 10 C -0.067 4.067 11 C -0.029 4.029 12 O -0.297 6.297 13 C 0.033 3.967 14 H 0.095 0.905 15 C 0.065 3.935 16 H 0.077 0.923 17 C -0.206 4.206 18 N -0.367 5.367 19 C -0.368 4.368 20 H 0.093 0.907 21 C -0.267 4.267 22 N -0.617 5.617 23 Si 0.797 3.203 24 H -0.205 1.205 25 H -0.224 1.224 26 H -0.208 1.208 27 C -0.026 4.026 28 S 0.511 5.489 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.184 0.816 35 H 0.165 0.835 36 H 0.134 0.866 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.154 0.846 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.210 0.790 44 H 0.057 0.943 45 H 0.100 0.900 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.264 -21.094 15.372 26.102 hybrid contribution -0.607 1.389 0.997 1.815 sum -0.343 -19.705 16.370 25.619 Atomic orbital electron populations 1.21824 0.93807 1.03120 1.02069 1.20309 0.96434 0.87728 1.05041 1.25007 1.04707 1.03294 0.98235 1.20092 1.04809 0.93045 1.00956 1.20912 0.95812 0.97145 0.94370 1.24342 1.19545 0.99536 0.99347 1.17501 0.76810 0.87783 0.80402 1.90780 1.58689 1.36799 1.59517 1.48102 1.60429 1.08327 1.17186 1.23076 0.99380 0.86676 0.97569 1.23167 0.93124 0.87876 0.98755 1.88073 1.89810 1.13684 1.38139 1.22623 0.93545 0.86923 0.93562 0.90537 1.20499 0.90388 0.93402 0.89257 0.92275 1.22140 0.96834 1.00927 1.00747 1.42502 1.48612 1.06416 1.39188 1.19575 1.17834 0.87417 1.11954 0.90712 1.25465 1.00459 1.00170 1.00566 1.69816 1.32296 1.28970 1.30663 0.85298 0.77299 0.80070 0.77610 1.20485 1.22405 1.20797 1.22138 0.97736 0.85129 0.97609 1.83214 1.58423 1.00466 1.06800 0.93303 0.90180 0.92505 0.89387 0.87962 0.81564 0.83474 0.86570 0.90009 0.91494 0.84617 0.93392 0.94267 0.91482 0.79002 0.94257 0.90011 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.90 71.98 0.71 -0.63 16 2 C -0.06 -0.49 6.36 29.85 0.19 -0.30 16 3 C -0.19 -2.80 5.53 24.68 0.14 -2.66 16 4 C -0.16 -2.51 10.00 21.08 0.21 -2.30 16 5 C -0.05 -1.05 10.11 21.72 0.22 -0.83 16 6 C -0.31 -7.90 5.84 24.08 0.14 -7.76 16 7 C 0.59 19.69 7.61 86.42 0.66 20.34 16 8 O -0.58 -23.75 16.43 -4.35 -0.07 -23.82 16 9 N -0.61 -19.49 3.02 -822.17 -2.48 -21.98 16 10 C 0.06 1.38 5.60 86.35 0.48 1.86 16 11 C 0.05 1.11 6.98 72.08 0.50 1.61 16 12 O -0.38 -12.50 9.24 -148.98 -1.38 -13.88 16 13 C 0.09 3.20 2.57 30.69 0.08 3.28 16 14 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 15 C 0.17 6.97 2.80 44.99 0.13 7.09 16 16 H 0.06 2.38 8.08 -2.38 -0.02 2.36 16 17 C -0.15 -5.32 9.30 71.98 0.67 -4.65 16 18 N -0.73 -36.72 4.24 -322.94 -1.37 -38.09 16 19 C -0.24 -13.16 9.93 84.03 0.83 -12.32 16 20 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 21 C -0.07 -4.31 5.50 84.86 0.47 -3.85 16 22 N -0.97 -59.72 13.06 21.65 0.28 -59.44 16 23 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 26 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 27 C 0.10 3.65 5.84 86.35 0.50 4.16 16 28 S 0.24 4.40 19.07 -56.49 -1.08 3.32 16 29 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 35 H 0.15 3.18 8.06 -2.92 -0.02 3.15 16 36 H 0.12 2.23 4.06 -19.16 -0.08 2.16 16 37 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.14 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.05 1.82 7.57 -2.38 -0.02 1.80 16 41 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.38 20.75 7.08 -92.70 -0.66 20.09 16 44 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 45 H 0.08 3.32 7.06 -2.39 -0.02 3.30 16 46 H 0.07 2.95 6.94 -2.39 -0.02 2.93 16 Total: -1.00 -72.94 382.40 2.13 -70.81 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.26 Total: 30.92 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 5.93 Total: 3.06 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -3.57 Total: -119.50 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -1.45 Total: -37.70 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.08 Total: 3.32 kcal Total: -72.94 2.13 -70.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485641013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.686 kcal (2) G-P(sol) polarization free energy of solvation -72.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds