Wall clock time and date at job start Tue Mar 31 2020 20:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47293 * 2 1 4 4 C 1.33815 * 124.52404 * 89.99785 * 3 2 1 5 5 C 1.37471 * 115.10252 * 180.02562 * 4 3 2 6 6 C 1.36642 * 113.29751 * 0.02562 * 5 4 3 7 7 C 1.46592 * 125.45728 * 179.97438 * 6 5 4 8 8 O 1.21698 * 119.99884 * 333.49931 * 7 6 5 9 9 N 1.34773 * 119.99782 * 153.50325 * 7 6 5 10 10 C 1.47150 * 120.98612 * 353.49430 * 9 7 6 11 11 C 1.53292 * 108.38768 * 230.56094 * 10 9 7 12 12 O 1.42958 * 109.26471 * 307.72023 * 11 10 9 13 13 C 1.42968 * 114.16732 * 62.49980 * 12 11 10 14 14 H 1.08997 * 109.50991 * 57.45061 * 13 12 11 15 15 C 1.53001 * 109.51181 * 177.55430 * 13 12 11 16 16 H 1.08993 * 109.47447 * 174.90081 * 15 13 12 17 17 C 1.53001 * 109.47033 * 54.89344 * 15 13 12 18 18 N 1.46500 * 109.46793 * 294.89975 * 15 13 12 19 19 C 1.36944 * 119.99985 * 205.00039 * 18 15 13 20 20 H 1.07996 * 119.99380 * 0.02562 * 19 18 15 21 21 C 1.38806 * 120.00229 * 179.97438 * 19 18 15 22 22 N 1.31626 * 119.99974 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00155 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47174 * 90.00244 * 23 21 19 25 25 H 1.48499 * 109.47315 * 210.00323 * 23 21 19 26 26 H 1.48498 * 109.47040 * 330.00343 * 23 21 19 27 27 C 1.47156 * 120.97902 * 173.52311 * 9 7 6 28 28 S 1.70616 * 124.52300 * 270.27537 * 3 2 1 29 29 H 1.09003 * 109.47428 * 59.99837 * 1 2 3 30 30 H 1.09006 * 109.47637 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47354 * 299.99754 * 1 2 3 32 32 H 1.09002 * 109.46662 * 240.00082 * 2 1 3 33 33 H 1.09003 * 109.47428 * 120.00162 * 2 1 3 34 34 H 1.08002 * 122.45070 * 0.03076 * 4 3 2 35 35 H 1.08001 * 123.34963 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.68222 * 350.28608 * 10 9 7 37 37 H 1.09000 * 109.68547 * 110.83406 * 10 9 7 38 38 H 1.08997 * 109.51302 * 67.62362 * 11 10 9 39 39 H 1.09003 * 109.51204 * 187.72401 * 11 10 9 40 40 H 1.09000 * 109.46733 * 60.00307 * 17 15 13 41 41 H 1.09001 * 109.46624 * 179.97438 * 17 15 13 42 42 H 1.08999 * 109.47765 * 300.00219 * 17 15 13 43 43 H 0.97003 * 120.00581 * 24.99977 * 18 15 13 44 44 H 0.96995 * 119.99898 * 179.97438 * 22 21 19 45 45 H 1.08995 * 109.67984 * 9.71741 * 27 9 7 46 46 H 1.09001 * 109.67804 * 249.16462 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2851 2.1358 1.1025 5 6 2.7367 3.4145 0.8774 6 6 2.8450 3.7238 -0.4491 7 6 3.2982 5.0094 -0.9883 8 8 3.1587 6.0265 -0.3348 9 7 3.8693 5.0650 -2.2078 10 6 4.1779 3.8363 -2.9564 11 6 5.6372 3.9066 -3.4205 12 8 5.8544 5.1406 -4.1087 13 6 5.6613 6.3036 -3.3000 14 1 6.3217 6.2587 -2.4340 15 6 5.9789 7.5553 -4.1206 16 1 5.7452 8.4435 -3.5338 17 6 5.1391 7.5532 -5.3995 18 7 7.4015 7.5616 -4.4706 19 6 8.0367 8.7460 -4.7331 20 1 7.4891 9.6754 -4.6817 21 6 9.3847 8.7521 -5.0643 22 7 10.0523 7.6194 -5.1265 23 14 10.2511 10.3677 -5.4230 24 1 10.8129 10.9185 -4.1636 25 1 11.3495 10.1352 -6.3950 26 1 9.2796 11.3338 -5.9958 27 6 4.2032 6.3562 -2.8297 28 16 2.3483 2.3346 -1.4057 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.1447 1.7374 2.0965 35 1 2.9807 4.1062 1.6703 36 1 4.0392 2.9687 -2.3114 37 1 3.5206 3.7592 -3.8225 38 1 6.2975 3.8520 -2.5550 39 1 5.8465 3.0732 -4.0912 40 1 4.0807 7.5485 -5.1391 41 1 5.3651 8.4452 -5.9839 42 1 5.3728 6.6650 -5.9864 43 1 7.8935 6.7269 -4.5165 44 1 10.9941 7.6236 -5.3582 45 1 4.0812 7.1572 -2.1007 46 1 3.5483 6.5328 -3.6830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485641014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:12 Heat of formation + Delta-G solvation = -29.815063 kcal Electronic energy + Delta-G solvation = -27192.154329 eV Core-core repulsion = 23402.130447 eV Total energy + Delta-G solvation = -3790.023882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.44622 -38.79694 -37.90370 -35.55288 -34.58377 -34.14699 -32.51414 -30.49475 -29.35396 -28.44216 -27.22859 -25.53593 -24.61119 -23.52294 -22.82670 -22.47755 -20.80490 -19.67586 -18.69805 -18.29680 -17.21154 -16.54403 -16.33013 -15.96871 -15.55093 -15.49841 -14.97662 -14.65358 -14.56546 -14.42246 -14.11139 -13.72923 -13.39192 -13.30207 -13.25385 -12.94653 -12.83067 -12.46300 -12.35444 -12.11134 -11.97587 -11.94342 -11.58547 -11.33873 -11.13997 -11.07473 -10.83359 -10.70776 -10.53584 -10.30583 -10.15006 -9.89693 -9.83669 -9.63915 -9.00670 -8.87936 -8.74676 -8.51109 -6.91513 -5.71676 -3.00417 0.23835 1.10746 1.56026 2.13113 2.67492 3.00753 3.46557 3.51677 3.53276 3.95376 4.21806 4.31581 4.55789 4.59161 4.71935 4.78516 4.83741 4.94108 5.05167 5.09145 5.14986 5.24651 5.31265 5.36316 5.39907 5.45200 5.60831 5.65849 5.68838 5.69885 5.70639 5.78877 5.87491 5.97849 5.99413 6.07059 6.19945 6.33889 6.47386 6.66224 6.83588 7.14838 7.18522 7.46107 7.73714 7.93770 8.46543 9.58384 10.15883 10.52522 11.50760 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027852 B = 0.002339 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.072812 B =11967.934362 C =12182.238776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.208 4.208 4 C -0.152 4.152 5 C -0.053 4.053 6 C -0.268 4.268 7 C 0.591 3.409 8 O -0.527 6.527 9 N -0.609 5.609 10 C 0.059 3.941 11 C 0.050 3.950 12 O -0.356 6.356 13 C 0.076 3.924 14 H 0.065 0.935 15 C 0.185 3.815 16 H 0.060 0.940 17 C -0.162 4.162 18 N -0.719 5.719 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.084 3.916 28 S 0.219 5.781 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.106 0.894 40 H 0.034 0.966 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.389 0.611 44 H 0.254 0.746 45 H 0.102 0.898 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.880 -18.260 9.584 28.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.327 4.327 4 C -0.183 4.183 5 C -0.086 4.086 6 C -0.388 4.388 7 C 0.379 3.621 8 O -0.405 6.405 9 N -0.342 5.342 10 C -0.066 4.066 11 C -0.028 4.028 12 O -0.274 6.274 13 C 0.016 3.984 14 H 0.083 0.917 15 C 0.074 3.926 16 H 0.078 0.922 17 C -0.223 4.223 18 N -0.360 5.360 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.038 4.038 28 S 0.488 5.512 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.159 0.841 35 H 0.169 0.831 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.124 0.876 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.223 0.777 44 H 0.064 0.936 45 H 0.121 0.879 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.957 -17.818 8.156 27.969 hybrid contribution 0.721 0.691 1.654 1.932 sum -19.236 -17.127 9.810 27.561 Atomic orbital electron populations 1.21804 0.94062 1.02197 1.02624 1.20148 0.96349 0.89435 1.03543 1.24576 1.06733 1.02373 0.99026 1.19923 1.04732 0.94030 0.99586 1.20723 0.96577 0.96237 0.95030 1.24532 1.16733 0.99444 0.98140 1.17010 0.77488 0.87020 0.80600 1.90834 1.56757 1.34901 1.58021 1.48007 1.60848 1.08085 1.17301 1.22902 0.99317 0.87115 0.97255 1.22854 0.92845 0.89005 0.98084 1.88108 1.89883 1.12583 1.36823 1.22993 0.93168 0.87527 0.94696 0.91715 1.20195 0.87236 0.91859 0.93274 0.92235 1.22419 0.97261 1.02248 1.00325 1.42354 1.03625 1.07273 1.82795 1.19248 0.92235 0.86378 1.39079 0.91157 1.24742 0.96723 0.96788 1.02735 1.69681 1.08799 1.24244 1.55194 0.86200 0.79341 0.83096 0.77612 1.21788 1.21839 1.20776 1.22556 0.97536 0.85011 0.98692 1.83243 1.58965 1.02090 1.06909 0.92365 0.91828 0.92190 0.90567 0.89863 0.84057 0.83115 0.88880 0.89868 0.92686 0.87568 0.94682 0.92857 0.92405 0.77671 0.93590 0.87939 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.89 37.16 0.37 -0.36 16 2 C -0.06 -0.30 6.36 -27.89 -0.18 -0.47 16 3 C -0.21 -1.60 5.53 -35.86 -0.20 -1.80 16 4 C -0.15 -1.27 9.99 -41.41 -0.41 -1.69 16 5 C -0.05 -0.56 10.11 -40.44 -0.41 -0.96 16 6 C -0.27 -3.15 5.84 -36.79 -0.21 -3.37 16 7 C 0.59 8.68 7.61 -12.89 -0.10 8.59 16 8 O -0.53 -9.46 16.43 5.19 0.09 -9.37 16 9 N -0.61 -8.34 3.02 -173.85 -0.52 -8.86 16 10 C 0.06 0.64 5.60 -3.54 -0.02 0.62 16 11 C 0.05 0.64 6.98 37.31 0.26 0.90 16 12 O -0.36 -6.04 9.24 -35.23 -0.33 -6.36 16 13 C 0.08 1.31 2.61 -26.58 -0.07 1.24 16 14 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 15 C 0.19 3.73 2.77 -67.93 -0.19 3.54 16 16 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 17 C -0.16 -2.99 9.06 37.16 0.34 -2.66 16 18 N -0.72 -18.34 5.10 -53.43 -0.27 -18.62 16 19 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 23 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.08 1.26 5.84 -3.53 -0.02 1.24 16 28 S 0.22 1.86 19.07 -107.50 -2.05 -0.19 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.09 0.87 4.06 -25.49 -0.10 0.77 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.03 0.53 6.42 -51.93 -0.33 0.20 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.12 7.56 -51.93 -0.39 0.72 16 43 H 0.39 10.71 7.58 -40.82 -0.31 10.40 16 44 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.10 1.61 7.06 -51.93 -0.37 1.24 16 46 H 0.08 1.17 6.27 -51.93 -0.33 0.84 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -33.49 381.13 -9.60 -43.10 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.87 Total: 7.20 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -1.09 Total: -2.50 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.07 Total: -55.24 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.24 Total: -15.73 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.05 Total: -0.19 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.49 -9.60 -43.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485641014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.282 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds