Wall clock time and date at job start Tue Mar 31 2020 20:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47293 * 2 1 4 4 C 1.33815 * 124.52404 * 89.99785 * 3 2 1 5 5 C 1.37471 * 115.10252 * 180.02562 * 4 3 2 6 6 C 1.36642 * 113.29751 * 0.02562 * 5 4 3 7 7 C 1.46592 * 125.45728 * 179.97438 * 6 5 4 8 8 O 1.21698 * 119.99884 * 333.49931 * 7 6 5 9 9 N 1.34773 * 119.99782 * 153.50325 * 7 6 5 10 10 C 1.47150 * 120.98612 * 353.49430 * 9 7 6 11 11 C 1.53292 * 108.38768 * 230.56094 * 10 9 7 12 12 O 1.42958 * 109.26471 * 307.72023 * 11 10 9 13 13 C 1.42968 * 114.16732 * 62.49980 * 12 11 10 14 14 H 1.08997 * 109.50991 * 57.45061 * 13 12 11 15 15 C 1.53001 * 109.51181 * 177.55430 * 13 12 11 16 16 H 1.08993 * 109.47447 * 174.90081 * 15 13 12 17 17 C 1.53001 * 109.47033 * 54.89344 * 15 13 12 18 18 N 1.46500 * 109.46793 * 294.89975 * 15 13 12 19 19 C 1.36944 * 119.99985 * 205.00039 * 18 15 13 20 20 H 1.07996 * 119.99380 * 0.02562 * 19 18 15 21 21 C 1.38806 * 120.00229 * 179.97438 * 19 18 15 22 22 N 1.31626 * 119.99974 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00155 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47174 * 90.00244 * 23 21 19 25 25 H 1.48499 * 109.47315 * 210.00323 * 23 21 19 26 26 H 1.48498 * 109.47040 * 330.00343 * 23 21 19 27 27 C 1.47156 * 120.97902 * 173.52311 * 9 7 6 28 28 S 1.70616 * 124.52300 * 270.27537 * 3 2 1 29 29 H 1.09003 * 109.47428 * 59.99837 * 1 2 3 30 30 H 1.09006 * 109.47637 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47354 * 299.99754 * 1 2 3 32 32 H 1.09002 * 109.46662 * 240.00082 * 2 1 3 33 33 H 1.09003 * 109.47428 * 120.00162 * 2 1 3 34 34 H 1.08002 * 122.45070 * 0.03076 * 4 3 2 35 35 H 1.08001 * 123.34963 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.68222 * 350.28608 * 10 9 7 37 37 H 1.09000 * 109.68547 * 110.83406 * 10 9 7 38 38 H 1.08997 * 109.51302 * 67.62362 * 11 10 9 39 39 H 1.09003 * 109.51204 * 187.72401 * 11 10 9 40 40 H 1.09000 * 109.46733 * 60.00307 * 17 15 13 41 41 H 1.09001 * 109.46624 * 179.97438 * 17 15 13 42 42 H 1.08999 * 109.47765 * 300.00219 * 17 15 13 43 43 H 0.97003 * 120.00581 * 24.99977 * 18 15 13 44 44 H 0.96995 * 119.99898 * 179.97438 * 22 21 19 45 45 H 1.08995 * 109.67984 * 9.71741 * 27 9 7 46 46 H 1.09001 * 109.67804 * 249.16462 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2851 2.1358 1.1025 5 6 2.7367 3.4145 0.8774 6 6 2.8450 3.7238 -0.4491 7 6 3.2982 5.0094 -0.9883 8 8 3.1587 6.0265 -0.3348 9 7 3.8693 5.0650 -2.2078 10 6 4.1779 3.8363 -2.9564 11 6 5.6372 3.9066 -3.4205 12 8 5.8544 5.1406 -4.1087 13 6 5.6613 6.3036 -3.3000 14 1 6.3217 6.2587 -2.4340 15 6 5.9789 7.5553 -4.1206 16 1 5.7452 8.4435 -3.5338 17 6 5.1391 7.5532 -5.3995 18 7 7.4015 7.5616 -4.4706 19 6 8.0367 8.7460 -4.7331 20 1 7.4891 9.6754 -4.6817 21 6 9.3847 8.7521 -5.0643 22 7 10.0523 7.6194 -5.1265 23 14 10.2511 10.3677 -5.4230 24 1 10.8129 10.9185 -4.1636 25 1 11.3495 10.1352 -6.3950 26 1 9.2796 11.3338 -5.9958 27 6 4.2032 6.3562 -2.8297 28 16 2.3483 2.3346 -1.4057 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.1447 1.7374 2.0965 35 1 2.9807 4.1062 1.6703 36 1 4.0392 2.9687 -2.3114 37 1 3.5206 3.7592 -3.8225 38 1 6.2975 3.8520 -2.5550 39 1 5.8465 3.0732 -4.0912 40 1 4.0807 7.5485 -5.1391 41 1 5.3651 8.4452 -5.9839 42 1 5.3728 6.6650 -5.9864 43 1 7.8935 6.7269 -4.5165 44 1 10.9941 7.6236 -5.3582 45 1 4.0812 7.1572 -2.1007 46 1 3.5483 6.5328 -3.6830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485641014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:11 Heat of formation + Delta-G solvation = -51.406777 kcal Electronic energy + Delta-G solvation = -27193.090615 eV Core-core repulsion = 23402.130447 eV Total energy + Delta-G solvation = -3790.960169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.58846 -39.87935 -38.78518 -37.16159 -35.86491 -34.72120 -34.31784 -32.05257 -30.19926 -30.00834 -28.38168 -26.65142 -25.93509 -24.98267 -23.85117 -23.23079 -21.86285 -21.14896 -19.56037 -19.38624 -19.10864 -17.74234 -17.19652 -17.09730 -16.84404 -16.66374 -16.20282 -15.90595 -15.80340 -15.32487 -15.12132 -14.98032 -14.70779 -14.45082 -14.31772 -14.04048 -13.94670 -13.69373 -13.50014 -13.11912 -13.01190 -12.85362 -12.77384 -12.46909 -12.44782 -12.40750 -12.18204 -12.11155 -11.91017 -11.68041 -11.65149 -11.54820 -11.28579 -11.07422 -10.93666 -9.86298 -9.58367 -9.42001 -9.00527 -7.91851 -5.20583 -0.54200 0.36877 0.85857 1.33517 1.47426 1.49347 1.57526 1.62614 2.02152 2.56860 2.73168 3.32701 3.42047 3.54639 3.72318 3.83513 3.89951 3.97180 4.03192 4.13872 4.21941 4.32630 4.34554 4.41192 4.42526 4.46617 4.54809 4.60375 4.73456 4.75385 4.79645 4.90611 4.93064 5.04014 5.08557 5.10137 5.18346 5.20198 5.26570 5.34969 5.41767 5.52157 5.62747 6.09940 6.19089 6.29707 6.84055 7.35930 8.11227 8.36198 9.31649 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027852 B = 0.002339 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.072812 B =11967.934362 C =12182.238776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.057 4.057 3 C -0.195 4.195 4 C -0.162 4.162 5 C -0.053 4.053 6 C -0.310 4.310 7 C 0.588 3.412 8 O -0.573 6.573 9 N -0.610 5.610 10 C 0.062 3.938 11 C 0.043 3.957 12 O -0.377 6.377 13 C 0.090 3.910 14 H 0.038 0.962 15 C 0.177 3.823 16 H 0.059 0.941 17 C -0.148 4.148 18 N -0.732 5.732 19 C -0.238 4.238 20 H 0.077 0.923 21 C -0.078 4.078 22 N -0.969 5.969 23 Si 0.973 3.027 24 H -0.289 1.289 25 H -0.296 1.296 26 H -0.269 1.269 27 C 0.094 3.906 28 S 0.258 5.742 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.163 0.837 35 H 0.144 0.856 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.045 0.955 39 H 0.137 0.863 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.048 0.952 43 H 0.375 0.625 44 H 0.250 0.750 45 H 0.090 0.910 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.886 -20.190 9.441 31.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.314 4.314 4 C -0.192 4.192 5 C -0.087 4.087 6 C -0.430 4.430 7 C 0.378 3.622 8 O -0.455 6.455 9 N -0.343 5.343 10 C -0.061 4.061 11 C -0.034 4.034 12 O -0.295 6.295 13 C 0.031 3.969 14 H 0.056 0.944 15 C 0.068 3.932 16 H 0.076 0.924 17 C -0.208 4.208 18 N -0.373 5.373 19 C -0.370 4.370 20 H 0.095 0.905 21 C -0.270 4.270 22 N -0.620 5.620 23 Si 0.802 3.198 24 H -0.216 1.216 25 H -0.223 1.223 26 H -0.193 1.193 27 C -0.029 4.029 28 S 0.527 5.473 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.180 0.820 35 H 0.161 0.839 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.063 0.937 39 H 0.154 0.846 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.207 0.793 44 H 0.058 0.942 45 H 0.108 0.892 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.015 -19.758 8.004 30.645 hybrid contribution 1.243 1.138 1.762 2.438 sum -20.772 -18.621 9.766 29.556 Atomic orbital electron populations 1.21814 0.93566 1.03118 1.02196 1.20310 0.96637 0.87759 1.04943 1.24999 1.04685 1.03312 0.98439 1.20069 1.04986 0.93144 1.00970 1.20894 0.96014 0.97156 0.94628 1.24369 1.19489 0.99792 0.99318 1.17447 0.76837 0.87684 0.80278 1.90793 1.58724 1.36776 1.59175 1.48077 1.60429 1.08413 1.17376 1.23063 0.98392 0.86599 0.98041 1.23151 0.93911 0.87984 0.98364 1.88061 1.90333 1.13611 1.37507 1.22572 0.94235 0.87057 0.93065 0.94384 1.20424 0.84869 0.93440 0.94500 0.92354 1.22215 0.98988 1.00999 0.98585 1.42526 1.05736 1.05952 1.83049 1.19647 0.92565 0.87442 1.37346 0.90501 1.25566 0.97675 1.00028 1.03770 1.69843 1.08708 1.26343 1.57103 0.85146 0.78065 0.79438 0.77151 1.21614 1.22269 1.19347 1.22326 0.95912 0.85763 0.98915 1.82950 1.58054 0.99945 1.06317 0.92851 0.90302 0.92608 0.89282 0.88405 0.81970 0.83869 0.87027 0.87696 0.93677 0.84556 0.91051 0.94342 0.93300 0.79267 0.94153 0.89158 0.88154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 71.98 0.71 -0.27 16 2 C -0.06 -0.40 6.36 29.84 0.19 -0.21 16 3 C -0.19 -2.45 5.53 24.68 0.14 -2.31 16 4 C -0.16 -2.38 9.99 21.08 0.21 -2.17 16 5 C -0.05 -1.08 10.11 21.71 0.22 -0.86 16 6 C -0.31 -7.06 5.84 24.08 0.14 -6.92 16 7 C 0.59 17.42 7.61 86.42 0.66 18.08 16 8 O -0.57 -21.38 16.43 -4.34 -0.07 -21.45 16 9 N -0.61 -16.40 3.02 -822.17 -2.48 -18.89 16 10 C 0.06 1.25 5.60 86.35 0.48 1.73 16 11 C 0.04 1.04 6.98 72.08 0.50 1.54 16 12 O -0.38 -12.67 9.24 -148.98 -1.38 -14.05 16 13 C 0.09 3.19 2.61 30.69 0.08 3.27 16 14 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 15 C 0.18 7.20 2.77 44.99 0.12 7.32 16 16 H 0.06 2.38 8.08 -2.39 -0.02 2.36 16 17 C -0.15 -5.34 9.06 71.98 0.65 -4.69 16 18 N -0.73 -38.27 5.10 -322.95 -1.65 -39.92 16 19 C -0.24 -13.52 9.93 84.03 0.83 -12.69 16 20 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 21 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 22 N -0.97 -60.77 13.06 21.65 0.28 -60.49 16 23 Si 0.97 47.19 29.55 68.60 2.03 49.22 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 27 C 0.09 2.78 5.84 86.35 0.50 3.28 16 28 S 0.26 3.72 19.07 -56.49 -1.08 2.65 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.08 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 35 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 36 H 0.11 1.82 4.06 -19.20 -0.08 1.74 16 37 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.14 2.44 8.14 -2.39 -0.02 2.43 16 40 H 0.07 2.03 6.42 -2.39 -0.02 2.01 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.05 1.84 7.56 -2.39 -0.02 1.82 16 43 H 0.38 21.38 7.58 -92.71 -0.70 20.68 16 44 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 45 H 0.09 2.92 7.06 -2.39 -0.02 2.90 16 46 H 0.10 2.63 6.27 -2.39 -0.01 2.61 16 Total: -1.00 -74.69 381.13 1.79 -72.90 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.22 Total: 29.07 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 5.92 Total: 0.96 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -3.85 Total: -119.29 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -1.45 Total: -35.50 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.08 Total: 2.65 kcal Total: -74.69 1.79 -72.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485641014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.489 kcal (2) G-P(sol) polarization free energy of solvation -74.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds