Wall clock time and date at job start Tue Mar 31 2020 20:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47477 * 2 1 4 4 C 1.33821 * 124.52452 * 89.99357 * 3 2 1 5 5 C 1.37463 * 115.10063 * 180.02562 * 4 3 2 6 6 C 1.36654 * 113.30024 * 0.02562 * 5 4 3 7 7 C 1.46580 * 125.45813 * 179.97438 * 6 5 4 8 8 O 1.21704 * 120.00384 * 43.34433 * 7 6 5 9 9 N 1.34776 * 119.99829 * 223.34865 * 7 6 5 10 10 C 1.47153 * 120.98267 * 356.38267 * 9 7 6 11 11 C 1.53293 * 108.38382 * 129.44602 * 10 9 7 12 12 O 1.42962 * 109.22585 * 52.30627 * 11 10 9 13 13 C 1.42964 * 114.16049 * 297.42116 * 12 11 10 14 14 H 1.09001 * 109.55500 * 302.62077 * 13 12 11 15 15 C 1.53002 * 109.50750 * 182.50008 * 13 12 11 16 16 H 1.09003 * 109.46999 * 185.25143 * 15 13 12 17 17 C 1.52996 * 109.47333 * 305.25614 * 15 13 12 18 18 N 1.46509 * 109.47156 * 65.25525 * 15 13 12 19 19 C 1.36932 * 119.99714 * 154.72417 * 18 15 13 20 20 H 1.07996 * 120.00689 * 359.97438 * 19 18 15 21 21 C 1.38819 * 119.99571 * 179.97438 * 19 18 15 22 22 N 1.31613 * 120.00073 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99981 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47098 * 89.99700 * 23 21 19 25 25 H 1.48502 * 109.47338 * 209.99760 * 23 21 19 26 26 H 1.48503 * 109.47081 * 329.99966 * 23 21 19 27 27 C 1.47147 * 120.98577 * 176.36684 * 9 7 6 28 28 S 1.70617 * 124.52118 * 270.27317 * 3 2 1 29 29 H 1.08999 * 109.47022 * 300.00076 * 1 2 3 30 30 H 1.08999 * 109.46755 * 59.99996 * 1 2 3 31 31 H 1.08997 * 109.47411 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47459 * 239.99616 * 2 1 3 33 33 H 1.08999 * 109.46755 * 120.00003 * 2 1 3 34 34 H 1.07997 * 122.44758 * 0.02720 * 4 3 2 35 35 H 1.08003 * 123.35265 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.68594 * 249.17014 * 10 9 7 37 37 H 1.09006 * 109.68089 * 9.72639 * 10 9 7 38 38 H 1.09006 * 109.51234 * 172.23096 * 11 10 9 39 39 H 1.09007 * 109.51551 * 292.32930 * 11 10 9 40 40 H 1.09002 * 109.47163 * 180.02562 * 17 15 13 41 41 H 1.09002 * 109.46659 * 299.99362 * 17 15 13 42 42 H 1.08989 * 109.47507 * 59.99810 * 17 15 13 43 43 H 0.96996 * 119.99546 * 335.00041 * 18 15 13 44 44 H 0.96998 * 120.00127 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.68281 * 110.82625 * 27 9 7 46 46 H 1.08997 * 109.68031 * 350.27907 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1359 1.1025 5 6 2.7368 3.4145 0.8775 6 6 2.8452 3.7238 -0.4492 7 6 3.2985 5.0093 -0.9884 8 8 4.2630 5.5681 -0.4998 9 7 2.6470 5.5725 -2.0251 10 6 1.5279 4.8796 -2.6831 11 6 0.3418 5.8472 -2.7657 12 8 0.7730 7.0703 -3.3675 13 6 1.7742 7.7678 -2.6224 14 1 1.4031 7.9763 -1.6190 15 6 2.1108 9.0838 -3.3265 16 1 2.9384 9.5706 -2.8105 17 6 2.5100 8.7993 -4.7758 18 7 0.9384 9.9622 -3.3064 19 6 1.0987 11.3199 -3.3851 20 1 2.0893 11.7432 -3.4615 21 6 -0.0122 12.1521 -3.3665 22 7 0.1418 13.4570 -3.4416 23 14 -1.7255 11.4200 -3.2335 24 1 -2.1021 11.2982 -1.8022 25 1 -2.6967 12.3036 -3.9274 26 1 -1.7400 10.0761 -3.8652 27 6 3.0336 6.8986 -2.5324 28 16 2.3485 2.3346 -1.4057 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.1446 1.7375 2.0964 35 1 2.9808 4.1062 1.6702 36 1 1.8238 4.5751 -3.6869 37 1 1.2460 4.0023 -2.1008 38 1 -0.4490 5.4030 -3.3704 39 1 -0.0356 6.0472 -1.7628 40 1 2.7502 9.7369 -5.2772 41 1 3.3823 8.1459 -4.7907 42 1 1.6825 8.3126 -5.2918 43 1 0.0490 9.5823 -3.2333 44 1 -0.6344 14.0385 -3.4291 45 1 3.4812 6.7972 -3.5211 46 1 3.7489 7.3582 -1.8505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485641015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:14 Heat of formation + Delta-G solvation = -26.856863 kcal Electronic energy + Delta-G solvation = -27361.634608 eV Core-core repulsion = 23571.739004 eV Total energy + Delta-G solvation = -3789.895605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.54352 -38.87834 -38.00422 -35.72594 -34.69975 -34.19765 -32.53375 -30.77268 -29.44752 -28.85945 -27.35763 -25.61645 -24.66349 -23.47219 -22.84050 -22.40230 -20.79281 -19.84126 -18.81173 -18.34644 -17.62137 -16.67466 -16.57367 -16.09742 -15.56085 -15.51107 -15.03492 -14.73169 -14.59084 -14.44963 -14.29442 -13.85904 -13.58323 -13.28793 -13.17550 -12.90339 -12.80022 -12.60911 -12.54280 -12.28668 -12.03010 -11.96681 -11.64806 -11.58927 -11.29240 -11.19159 -10.93793 -10.78152 -10.66010 -10.42694 -10.17069 -10.00490 -9.94141 -9.56115 -9.05003 -8.91515 -8.81456 -8.62210 -7.24575 -5.74075 -3.09229 0.23180 1.00110 1.48320 2.11757 2.55432 2.89281 3.41246 3.47077 3.48453 3.80780 4.16415 4.24945 4.51839 4.57770 4.63223 4.74598 4.77158 4.89416 4.94016 4.99008 5.05412 5.18640 5.20341 5.29330 5.33066 5.40973 5.52944 5.54068 5.57288 5.61585 5.67681 5.69956 5.71446 5.80992 5.86958 6.01555 6.10764 6.22138 6.34360 6.48179 6.74774 7.05709 7.09149 7.29664 7.85820 8.02138 8.45097 9.24288 9.96610 10.17583 11.44146 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019481 B = 0.002692 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.974437 B =10399.704994 C =10927.531106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.205 4.205 4 C -0.149 4.149 5 C -0.059 4.059 6 C -0.263 4.263 7 C 0.591 3.409 8 O -0.524 6.524 9 N -0.607 5.607 10 C 0.059 3.941 11 C 0.048 3.952 12 O -0.361 6.361 13 C 0.071 3.929 14 H 0.066 0.934 15 C 0.191 3.809 16 H 0.069 0.931 17 C -0.163 4.163 18 N -0.744 5.744 19 C -0.242 4.242 20 H 0.091 0.909 21 C 0.005 3.995 22 N -0.934 5.934 23 Si 0.882 3.118 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.273 1.273 27 C 0.085 3.915 28 S 0.214 5.786 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.038 0.962 42 H 0.056 0.944 43 H 0.366 0.634 44 H 0.259 0.741 45 H 0.086 0.914 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 -31.157 5.641 31.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.324 4.324 4 C -0.179 4.179 5 C -0.092 4.092 6 C -0.384 4.384 7 C 0.378 3.622 8 O -0.401 6.401 9 N -0.340 5.340 10 C -0.065 4.065 11 C -0.030 4.030 12 O -0.279 6.279 13 C 0.012 3.988 14 H 0.084 0.916 15 C 0.080 3.920 16 H 0.087 0.913 17 C -0.223 4.223 18 N -0.387 5.387 19 C -0.372 4.372 20 H 0.109 0.891 21 C -0.191 4.191 22 N -0.582 5.582 23 Si 0.712 3.288 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.199 1.199 27 C -0.037 4.037 28 S 0.482 5.518 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.124 0.876 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.199 0.801 44 H 0.069 0.931 45 H 0.104 0.896 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.510 -30.832 4.161 31.212 hybrid contribution -1.158 -0.316 1.932 2.275 sum 1.351 -31.148 6.093 31.767 Atomic orbital electron populations 1.21810 0.93942 1.02264 1.02698 1.20148 0.96430 0.89335 1.03516 1.24411 1.07374 1.02246 0.98387 1.19922 1.04442 0.93932 0.99617 1.20673 0.97226 0.96480 0.94796 1.24486 1.16009 0.99632 0.98226 1.17034 0.82552 0.83320 0.79297 1.90851 1.26239 1.63550 1.59478 1.48040 1.33694 1.19709 1.32577 1.22865 0.87983 0.96596 0.99028 1.22891 0.95098 0.85650 0.99389 1.88087 1.57405 1.34227 1.48168 1.23053 0.86965 0.92534 0.96267 0.91649 1.20172 0.91364 0.86321 0.94099 0.91284 1.22383 0.99716 1.00954 0.99244 1.42700 1.02847 1.03408 1.89705 1.19077 0.95137 0.80358 1.42645 0.89134 1.24651 0.97329 0.95100 1.02012 1.69699 1.29267 1.01794 1.57439 0.86570 0.85900 0.78562 0.77768 1.21234 1.21825 1.19893 1.22529 0.98503 0.81589 1.01095 1.83146 1.59757 1.01578 1.07324 0.92110 0.92303 0.91816 0.90636 0.89835 0.83926 0.83226 0.89839 0.88814 0.87637 0.92739 0.92355 0.94313 0.92514 0.80086 0.93100 0.89641 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.90 37.16 0.37 -0.30 16 2 C -0.06 -0.27 6.36 -27.88 -0.18 -0.45 16 3 C -0.21 -1.50 5.53 -35.86 -0.20 -1.70 16 4 C -0.15 -1.18 9.99 -41.41 -0.41 -1.60 16 5 C -0.06 -0.59 10.23 -40.44 -0.41 -1.01 16 6 C -0.26 -2.95 5.54 -36.79 -0.20 -3.16 16 7 C 0.59 8.30 7.56 -12.90 -0.10 8.21 16 8 O -0.52 -9.12 16.56 5.19 0.09 -9.04 16 9 N -0.61 -7.84 3.02 -173.86 -0.52 -8.37 16 10 C 0.06 0.60 5.99 -3.53 -0.02 0.58 16 11 C 0.05 0.55 6.98 37.31 0.26 0.81 16 12 O -0.36 -5.66 9.24 -35.23 -0.33 -5.99 16 13 C 0.07 1.15 2.61 -26.58 -0.07 1.08 16 14 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 15 C 0.19 3.66 2.77 -67.93 -0.19 3.47 16 16 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 17 C -0.16 -2.89 9.06 37.16 0.34 -2.55 16 18 N -0.74 -17.79 4.91 -53.42 -0.26 -18.05 16 19 C -0.24 -6.85 10.41 -15.06 -0.16 -7.01 16 20 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 21 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 22 N -0.93 -29.55 13.97 55.49 0.78 -28.77 16 23 Si 0.88 22.45 27.73 -169.99 -4.71 17.73 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.27 -6.64 6.52 56.52 0.37 -6.27 16 27 C 0.09 1.20 5.81 -3.54 -0.02 1.18 16 28 S 0.21 1.72 19.74 -107.50 -2.12 -0.40 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.15 1.45 8.06 -52.48 -0.42 1.02 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.80 4.13 -30.55 -0.13 0.68 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.04 0.57 6.42 -51.93 -0.33 0.23 16 42 H 0.06 1.03 7.55 -51.94 -0.39 0.64 16 43 H 0.37 8.81 5.45 -40.82 -0.22 8.59 16 44 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 45 H 0.09 1.13 6.27 -51.93 -0.33 0.81 16 46 H 0.10 1.55 7.10 -51.93 -0.37 1.18 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -34.32 379.08 -9.32 -43.64 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.85 Total: 5.93 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.09 Total: -2.39 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.01 Total: -55.20 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.24 Total: -15.02 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.71 Total: 17.73 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.12 Total: -0.40 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.32 -9.32 -43.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485641015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.786 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds