Wall clock time and date at job start Tue Mar 31 2020 20:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47477 * 2 1 4 4 C 1.33821 * 124.52452 * 89.99357 * 3 2 1 5 5 C 1.37463 * 115.10063 * 180.02562 * 4 3 2 6 6 C 1.36654 * 113.30024 * 0.02562 * 5 4 3 7 7 C 1.46580 * 125.45813 * 179.97438 * 6 5 4 8 8 O 1.21704 * 120.00384 * 43.34433 * 7 6 5 9 9 N 1.34776 * 119.99829 * 223.34865 * 7 6 5 10 10 C 1.47153 * 120.98267 * 356.38267 * 9 7 6 11 11 C 1.53293 * 108.38382 * 129.44602 * 10 9 7 12 12 O 1.42962 * 109.22585 * 52.30627 * 11 10 9 13 13 C 1.42964 * 114.16049 * 297.42116 * 12 11 10 14 14 H 1.09001 * 109.55500 * 302.62077 * 13 12 11 15 15 C 1.53002 * 109.50750 * 182.50008 * 13 12 11 16 16 H 1.09003 * 109.46999 * 185.25143 * 15 13 12 17 17 C 1.52996 * 109.47333 * 305.25614 * 15 13 12 18 18 N 1.46509 * 109.47156 * 65.25525 * 15 13 12 19 19 C 1.36932 * 119.99714 * 154.72417 * 18 15 13 20 20 H 1.07996 * 120.00689 * 359.97438 * 19 18 15 21 21 C 1.38819 * 119.99571 * 179.97438 * 19 18 15 22 22 N 1.31613 * 120.00073 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99981 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47098 * 89.99700 * 23 21 19 25 25 H 1.48502 * 109.47338 * 209.99760 * 23 21 19 26 26 H 1.48503 * 109.47081 * 329.99966 * 23 21 19 27 27 C 1.47147 * 120.98577 * 176.36684 * 9 7 6 28 28 S 1.70617 * 124.52118 * 270.27317 * 3 2 1 29 29 H 1.08999 * 109.47022 * 300.00076 * 1 2 3 30 30 H 1.08999 * 109.46755 * 59.99996 * 1 2 3 31 31 H 1.08997 * 109.47411 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47459 * 239.99616 * 2 1 3 33 33 H 1.08999 * 109.46755 * 120.00003 * 2 1 3 34 34 H 1.07997 * 122.44758 * 0.02720 * 4 3 2 35 35 H 1.08003 * 123.35265 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.68594 * 249.17014 * 10 9 7 37 37 H 1.09006 * 109.68089 * 9.72639 * 10 9 7 38 38 H 1.09006 * 109.51234 * 172.23096 * 11 10 9 39 39 H 1.09007 * 109.51551 * 292.32930 * 11 10 9 40 40 H 1.09002 * 109.47163 * 180.02562 * 17 15 13 41 41 H 1.09002 * 109.46659 * 299.99362 * 17 15 13 42 42 H 1.08989 * 109.47507 * 59.99810 * 17 15 13 43 43 H 0.96996 * 119.99546 * 335.00041 * 18 15 13 44 44 H 0.96998 * 120.00127 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.68281 * 110.82625 * 27 9 7 46 46 H 1.08997 * 109.68031 * 350.27907 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1359 1.1025 5 6 2.7368 3.4145 0.8775 6 6 2.8452 3.7238 -0.4492 7 6 3.2985 5.0093 -0.9884 8 8 4.2630 5.5681 -0.4998 9 7 2.6470 5.5725 -2.0251 10 6 1.5279 4.8796 -2.6831 11 6 0.3418 5.8472 -2.7657 12 8 0.7730 7.0703 -3.3675 13 6 1.7742 7.7678 -2.6224 14 1 1.4031 7.9763 -1.6190 15 6 2.1108 9.0838 -3.3265 16 1 2.9384 9.5706 -2.8105 17 6 2.5100 8.7993 -4.7758 18 7 0.9384 9.9622 -3.3064 19 6 1.0987 11.3199 -3.3851 20 1 2.0893 11.7432 -3.4615 21 6 -0.0122 12.1521 -3.3665 22 7 0.1418 13.4570 -3.4416 23 14 -1.7255 11.4200 -3.2335 24 1 -2.1021 11.2982 -1.8022 25 1 -2.6967 12.3036 -3.9274 26 1 -1.7400 10.0761 -3.8652 27 6 3.0336 6.8986 -2.5324 28 16 2.3485 2.3346 -1.4057 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.1446 1.7375 2.0964 35 1 2.9808 4.1062 1.6702 36 1 1.8238 4.5751 -3.6869 37 1 1.2460 4.0023 -2.1008 38 1 -0.4490 5.4030 -3.3704 39 1 -0.0356 6.0472 -1.7628 40 1 2.7502 9.7369 -5.2772 41 1 3.3823 8.1459 -4.7907 42 1 1.6825 8.3126 -5.2918 43 1 0.0490 9.5823 -3.2333 44 1 -0.6344 14.0385 -3.4291 45 1 3.4812 6.7972 -3.5211 46 1 3.7489 7.3582 -1.8505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485641015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:13 Heat of formation + Delta-G solvation = -49.478390 kcal Electronic energy + Delta-G solvation = -27362.615551 eV Core-core repulsion = 23571.739004 eV Total energy + Delta-G solvation = -3790.876548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.61291 -39.91121 -38.81354 -37.30602 -35.88201 -34.72848 -34.35667 -32.42589 -30.32049 -30.21764 -28.40483 -26.64442 -25.86472 -24.83827 -23.77309 -23.25066 -21.85634 -21.27514 -19.83748 -19.59440 -19.09371 -17.81072 -17.36696 -17.13056 -16.78629 -16.63132 -16.31566 -15.89962 -15.78455 -15.43180 -15.03414 -14.91025 -14.67044 -14.53313 -14.34098 -14.31590 -13.97313 -13.82647 -13.46729 -13.28001 -13.19203 -12.94133 -12.73159 -12.50440 -12.43726 -12.40170 -12.13962 -12.10483 -11.87501 -11.78961 -11.69027 -11.62194 -11.32149 -11.10792 -10.98925 -9.85379 -9.61437 -9.43579 -9.32676 -8.01532 -5.34464 -0.48954 0.30104 0.83394 1.36133 1.38244 1.40510 1.49169 1.58049 1.96430 2.49303 2.67971 3.29690 3.31705 3.40575 3.71766 3.80355 3.82648 3.93714 3.98558 4.13218 4.19880 4.23183 4.32768 4.39487 4.41749 4.46333 4.54779 4.58556 4.71349 4.73783 4.79032 4.88645 4.90870 5.03307 5.04468 5.09990 5.16696 5.19693 5.23063 5.35602 5.41599 5.58254 5.77318 6.08003 6.12812 6.23396 6.82333 7.08375 7.84262 8.04848 9.19913 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019481 B = 0.002692 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.974437 B =10399.704994 C =10927.531106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.057 4.057 3 C -0.193 4.193 4 C -0.159 4.159 5 C -0.060 4.060 6 C -0.303 4.303 7 C 0.588 3.412 8 O -0.571 6.571 9 N -0.607 5.607 10 C 0.061 3.939 11 C 0.041 3.959 12 O -0.378 6.378 13 C 0.087 3.913 14 H 0.050 0.950 15 C 0.181 3.819 16 H 0.060 0.940 17 C -0.151 4.151 18 N -0.747 5.747 19 C -0.227 4.227 20 H 0.059 0.941 21 C -0.065 4.065 22 N -0.984 5.984 23 Si 0.953 3.047 24 H -0.281 1.281 25 H -0.295 1.295 26 H -0.252 1.252 27 C 0.092 3.908 28 S 0.252 5.748 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.163 0.837 35 H 0.143 0.857 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.050 0.950 40 H 0.034 0.966 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.367 0.633 44 H 0.257 0.743 45 H 0.099 0.901 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.617 -35.563 5.367 35.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.313 4.313 4 C -0.189 4.189 5 C -0.094 4.094 6 C -0.423 4.423 7 C 0.377 3.623 8 O -0.452 6.452 9 N -0.339 5.339 10 C -0.062 4.062 11 C -0.036 4.036 12 O -0.297 6.297 13 C 0.028 3.972 14 H 0.068 0.932 15 C 0.072 3.928 16 H 0.078 0.922 17 C -0.210 4.210 18 N -0.391 5.391 19 C -0.358 4.358 20 H 0.077 0.923 21 C -0.256 4.256 22 N -0.635 5.635 23 Si 0.780 3.220 24 H -0.207 1.207 25 H -0.222 1.222 26 H -0.177 1.177 27 C -0.030 4.030 28 S 0.521 5.479 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.180 0.820 35 H 0.161 0.839 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.155 0.845 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.201 0.799 44 H 0.066 0.934 45 H 0.117 0.883 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.058 -35.312 3.867 35.539 hybrid contribution -0.639 0.923 2.043 2.331 sum 0.419 -34.390 5.911 34.897 Atomic orbital electron populations 1.21817 0.93394 1.03107 1.02379 1.20300 0.96763 0.87723 1.04793 1.24827 1.05405 1.03152 0.97866 1.20062 1.04765 0.93082 1.00945 1.20841 0.96767 0.97367 0.94427 1.24326 1.18786 0.99843 0.99334 1.17457 0.81909 0.84066 0.78835 1.90813 1.28353 1.65145 1.60889 1.48107 1.34197 1.19126 1.32482 1.23057 0.86515 0.96553 1.00067 1.23202 0.96288 0.84321 0.99767 1.88040 1.57153 1.35938 1.48530 1.22602 0.88239 0.91594 0.94788 0.93232 1.20379 0.89600 0.87245 0.95528 0.92177 1.22205 1.01058 1.00452 0.97288 1.42691 1.04386 1.02214 1.89769 1.19042 0.93777 0.82439 1.40530 0.92267 1.25462 1.01773 0.95458 1.02894 1.69877 1.30327 1.03454 1.59796 0.85434 0.80238 0.78429 0.77889 1.20703 1.22204 1.17694 1.22311 0.97073 0.82179 1.01485 1.82899 1.58714 0.99650 1.06684 0.92556 0.92528 0.90467 0.89471 0.88514 0.81967 0.83934 0.87942 0.87035 0.84458 0.93119 0.94663 0.90921 0.92549 0.79928 0.93400 0.88324 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.90 71.98 0.71 -0.12 16 2 C -0.06 -0.35 6.36 29.85 0.19 -0.16 16 3 C -0.19 -2.23 5.53 24.68 0.14 -2.10 16 4 C -0.16 -2.18 9.99 21.08 0.21 -1.97 16 5 C -0.06 -1.16 10.23 21.72 0.22 -0.94 16 6 C -0.30 -6.47 5.54 24.08 0.13 -6.34 16 7 C 0.59 16.42 7.56 86.42 0.65 17.07 16 8 O -0.57 -20.53 16.56 -4.36 -0.07 -20.60 16 9 N -0.61 -14.99 3.02 -822.18 -2.48 -17.47 16 10 C 0.06 1.07 5.99 86.35 0.52 1.59 16 11 C 0.04 0.83 6.98 72.08 0.50 1.34 16 12 O -0.38 -11.04 9.24 -148.98 -1.38 -12.42 16 13 C 0.09 2.77 2.61 30.69 0.08 2.85 16 14 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 15 C 0.18 6.95 2.77 44.99 0.12 7.08 16 16 H 0.06 2.41 8.08 -2.39 -0.02 2.39 16 17 C -0.15 -5.19 9.06 71.98 0.65 -4.54 16 18 N -0.75 -35.80 4.91 -322.92 -1.58 -37.39 16 19 C -0.23 -13.15 10.41 84.04 0.88 -12.28 16 20 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 21 C -0.06 -3.88 5.50 84.86 0.47 -3.42 16 22 N -0.98 -64.12 13.97 21.65 0.30 -63.81 16 23 Si 0.95 46.72 27.73 68.60 1.90 48.62 16 24 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 26 H -0.25 -11.37 6.52 99.48 0.65 -10.72 16 27 C 0.09 2.55 5.81 86.35 0.50 3.05 16 28 S 0.25 3.35 19.74 -56.49 -1.12 2.24 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.11 1.57 4.13 -15.97 -0.07 1.50 16 38 H 0.14 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 1.99 6.42 -2.39 -0.02 1.98 16 42 H 0.06 1.95 7.55 -2.39 -0.02 1.93 16 43 H 0.37 17.29 5.45 -92.71 -0.51 16.78 16 44 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 45 H 0.10 2.44 6.27 -2.39 -0.01 2.43 16 46 H 0.09 2.75 7.10 -2.39 -0.02 2.73 16 Total: -1.00 -76.91 379.08 1.92 -74.99 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.37 Total: 24.72 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.98 Total: 1.12 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -3.76 Total: -118.67 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -1.45 Total: -33.02 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.90 Total: 48.62 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.12 Total: 2.24 kcal Total: -76.91 1.92 -74.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485641015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.509 kcal (2) G-P(sol) polarization free energy of solvation -76.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds