Wall clock time and date at job start Tue Mar 31 2020 21:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47046 * 116.63147 * 3 2 1 5 5 C 1.52996 * 109.47118 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47159 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 C 1.52997 * 109.47555 * 180.02562 * 9 8 6 11 11 H 1.09000 * 112.84729 * 43.80692 * 10 9 8 12 12 C 1.53782 * 113.61653 * 174.99994 * 10 9 8 13 13 C 1.53780 * 87.07872 * 139.98291 * 12 10 9 14 14 H 1.09000 * 113.61346 * 219.93267 * 13 12 10 15 15 N 1.46504 * 113.61520 * 89.11690 * 13 12 10 16 16 C 1.34780 * 120.00392 * 154.99469 * 15 13 12 17 17 O 1.21286 * 119.99388 * 0.02562 * 16 15 13 18 18 C 1.50692 * 120.00021 * 180.02562 * 16 15 13 19 19 S 1.81007 * 109.46963 * 180.02562 * 18 16 15 20 20 C 1.76203 * 99.99884 * 179.97438 * 19 18 16 21 21 H 1.07993 * 120.00391 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99430 * 179.97438 * 20 19 18 23 23 N 1.31626 * 120.00381 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99337 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47229 * 90.00487 * 24 22 20 26 26 H 1.48501 * 109.46972 * 209.99845 * 24 22 20 27 27 H 1.48495 * 109.47418 * 330.00082 * 24 22 20 28 28 C 1.53774 * 87.08411 * 334.56798 * 13 12 10 29 29 H 4.44645 * 5.63371 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.47177 * 356.63353 * 3 2 1 31 31 H 1.09003 * 109.46522 * 236.62810 * 3 2 1 32 32 H 1.09004 * 109.47131 * 59.99653 * 4 3 2 33 33 H 1.09000 * 109.47504 * 299.99956 * 4 3 2 34 34 H 1.09004 * 109.47066 * 60.00025 * 5 4 3 35 35 H 1.08994 * 109.47405 * 299.99855 * 5 4 3 36 36 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 37 37 H 1.08998 * 109.47134 * 300.00670 * 9 8 6 38 38 H 1.09002 * 109.46857 * 59.99862 * 9 8 6 39 39 H 1.08997 * 113.61383 * 254.53330 * 12 10 9 40 40 H 1.08998 * 113.60973 * 25.43845 * 12 10 9 41 41 H 0.96999 * 119.99517 * 335.00117 * 15 13 12 42 42 H 1.09003 * 109.47164 * 300.00116 * 18 16 15 43 43 H 1.08992 * 109.47539 * 60.00561 * 18 16 15 44 44 H 0.97000 * 120.00181 * 179.97438 * 23 22 20 45 45 H 1.08998 * 113.61544 * 270.88323 * 28 13 12 46 46 H 1.09004 * 113.61702 * 139.97454 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.6475 -1.2894 5 6 4.6857 0.6487 -1.2891 6 6 5.1877 1.2853 -2.5595 7 8 4.3994 1.6978 -3.3838 8 7 6.5127 1.4017 -2.7770 9 6 7.0008 2.0259 -4.0092 10 6 8.5308 2.0316 -4.0067 11 1 8.9570 1.0858 -3.6722 12 6 9.1470 2.5568 -5.3141 13 6 10.1892 3.2763 -4.4417 14 1 10.4392 4.2765 -4.7956 15 7 11.3728 2.4634 -4.1509 16 6 12.5456 3.0605 -3.8600 17 8 12.6209 4.2708 -3.8385 18 6 13.7632 2.2243 -3.5614 19 16 15.1690 3.3093 -3.2110 20 6 16.4171 2.1036 -2.9052 21 1 16.1787 1.0521 -2.9662 22 6 17.7067 2.5056 -2.5857 23 7 17.9974 3.7872 -2.5118 24 14 19.0297 1.2274 -2.2608 25 1 19.7163 0.8910 -3.5338 26 1 20.0173 1.7719 -1.2946 27 1 18.4073 0.0034 -1.6955 28 6 9.1411 3.2629 -3.3165 29 1 -1.0501 -0.0002 0.0000 30 1 3.0098 -1.0250 0.0603 31 1 3.0090 0.5661 0.8583 32 1 2.7919 1.6732 -1.3498 33 1 2.7927 0.0821 -2.1477 34 1 5.0499 -0.3769 -1.2285 35 1 5.0484 1.2144 -0.4310 36 1 7.1433 1.0720 -2.1177 37 1 6.6413 1.4614 -4.8695 38 1 6.6333 3.0504 -4.0676 39 1 9.5699 1.7735 -5.9430 40 1 8.4938 3.2353 -5.8629 41 1 11.3125 1.4954 -4.1678 42 1 13.5669 1.5931 -2.6947 43 1 13.9936 1.5974 -4.4227 44 1 18.8985 4.0680 -2.2882 45 1 8.4864 4.1343 -3.3193 46 1 9.5593 3.0494 -2.3328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001487398708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:12 Heat of formation + Delta-G solvation = -21.788260 kcal Electronic energy + Delta-G solvation = -24656.777616 eV Core-core repulsion = 20867.101802 eV Total energy + Delta-G solvation = -3789.675813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.52862 -39.81047 -38.19083 -36.10795 -34.96459 -33.08756 -32.68525 -32.45661 -29.72168 -28.79993 -27.20621 -25.99408 -25.51299 -23.38894 -22.35103 -21.03311 -20.60991 -19.38157 -18.63694 -17.89667 -17.28281 -16.65472 -16.50180 -16.23088 -16.05019 -15.36241 -15.06058 -14.83920 -14.81348 -14.53981 -14.31453 -13.99561 -13.88891 -13.37196 -13.18733 -13.02838 -12.89601 -12.73325 -12.55757 -12.31815 -12.06862 -11.82480 -11.47806 -11.32713 -11.09051 -11.05499 -10.88552 -10.79258 -10.66399 -10.55632 -10.52212 -10.13597 -9.84202 -9.47145 -9.42465 -9.09893 -8.93479 -8.27222 -6.53421 -6.24554 -3.95453 2.28357 2.36621 2.43271 2.81227 2.96632 3.01253 3.20079 3.25472 3.29051 3.64557 3.91450 4.16773 4.17446 4.19117 4.35156 4.44072 4.49765 4.58324 4.64173 4.86491 4.95426 4.97150 5.08677 5.09408 5.10837 5.12936 5.24781 5.36543 5.43987 5.47365 5.53952 5.61381 5.62893 5.74374 5.76393 5.78316 5.80792 5.84456 5.98831 6.08391 6.09805 6.64461 7.10049 7.21130 7.56552 7.64856 7.85418 8.32161 8.55817 9.20837 10.82886 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019393 B = 0.001448 C = 0.001378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.490386 B =19335.923707 C =20310.270879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 C -0.014 4.014 4 C -0.100 4.100 5 C -0.142 4.142 6 C 0.510 3.490 7 O -0.542 6.542 8 N -0.730 5.730 9 C 0.129 3.871 10 C -0.126 4.126 11 H 0.096 0.904 12 C -0.136 4.136 13 C 0.124 3.876 14 H 0.104 0.896 15 N -0.722 5.722 16 C 0.534 3.466 17 O -0.515 6.515 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C -0.148 4.148 29 H 0.216 0.784 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.402 0.598 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.269 0.731 45 H 0.091 0.909 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.948 -9.559 1.709 30.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.187 4.187 3 C -0.051 4.051 4 C -0.138 4.138 5 C -0.182 4.182 6 C 0.297 3.703 7 O -0.419 6.419 8 N -0.382 5.382 9 C 0.006 3.994 10 C -0.145 4.145 11 H 0.114 0.886 12 C -0.175 4.175 13 C 0.018 3.982 14 H 0.122 0.878 15 N -0.375 5.375 16 C 0.320 3.680 17 O -0.388 6.388 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.186 4.186 29 H 0.233 0.767 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.236 0.764 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.109 0.891 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -29.221 -7.074 1.169 30.088 hybrid contribution 0.883 -2.908 0.533 3.086 sum -28.339 -9.982 1.702 30.093 Atomic orbital electron populations 1.24945 0.96051 1.01041 1.00679 1.23088 0.94585 1.00473 1.00590 1.18768 0.84938 1.02328 0.99018 1.21277 0.92862 1.02581 0.97041 1.21692 0.97529 1.02670 0.96325 1.20709 0.82159 0.78964 0.88484 1.90725 1.55296 1.48764 1.47097 1.46058 1.07128 1.62215 1.22788 1.21391 0.92876 0.98477 0.86670 1.22880 0.93620 0.99420 0.98541 0.88577 1.23303 0.97580 1.00688 0.95908 1.21699 0.84427 0.96587 0.95529 0.87803 1.45710 1.08872 1.09596 1.73343 1.20343 0.83459 0.88774 0.75390 1.90707 1.84427 1.14288 1.49397 1.23532 0.98569 1.03788 1.04543 1.85419 0.98296 1.08887 1.90689 1.22865 0.96334 0.94057 1.55231 0.90931 1.24986 0.97867 0.95956 0.94694 1.70012 1.20837 1.14203 1.45207 0.86174 0.80469 0.80602 0.78288 1.20250 1.20727 1.19705 1.23539 0.98132 0.97652 0.99314 0.76670 0.89426 0.89386 0.90702 0.90732 0.88550 0.88463 0.76384 0.91406 0.91166 0.90445 0.88494 0.76849 0.89231 0.89190 0.92148 0.89092 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.44 19.25 29.55 0.57 -0.87 16 2 C -0.19 -1.40 13.34 -37.12 -0.50 -1.89 16 3 C -0.01 -0.07 5.70 -29.52 -0.17 -0.24 16 4 C -0.10 -0.60 4.46 -26.74 -0.12 -0.72 16 5 C -0.14 -0.63 5.70 -27.88 -0.16 -0.79 16 6 C 0.51 4.06 7.83 -10.98 -0.09 3.97 16 7 O -0.54 -6.69 15.98 5.55 0.09 -6.61 16 8 N -0.73 -4.49 5.56 -60.29 -0.33 -4.82 16 9 C 0.13 0.90 5.51 -4.04 -0.02 0.87 16 10 C -0.13 -0.78 3.63 -89.81 -0.33 -1.11 16 11 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 12 C -0.14 -0.96 7.39 -25.92 -0.19 -1.15 16 13 C 0.12 1.28 4.32 -67.12 -0.29 0.99 16 14 H 0.10 1.32 7.46 -51.93 -0.39 0.93 16 15 N -0.72 -8.66 5.26 -53.02 -0.28 -8.94 16 16 C 0.53 9.43 7.85 -10.99 -0.09 9.34 16 17 O -0.51 -11.28 15.46 5.55 0.09 -11.19 16 18 C -0.15 -2.97 6.16 36.00 0.22 -2.74 16 19 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 20 C -0.54 -15.03 9.50 30.94 0.29 -14.73 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.86 13.22 55.49 0.73 -25.12 16 24 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 C -0.15 -1.23 7.43 -25.92 -0.19 -1.42 16 29 H 0.22 0.79 7.80 -54.09 -0.42 0.36 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.40 1.52 8.47 -40.82 -0.35 1.18 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.56 7.85 -51.93 -0.41 0.16 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.61 8.10 -51.93 -0.42 0.19 16 41 H 0.40 3.59 8.70 -40.82 -0.36 3.24 16 42 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 43 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.09 0.73 7.90 -51.93 -0.41 0.32 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 410.51 15.07 6.19 6.19 Total: -1.00 -37.32 410.51 -9.26 -46.59 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.36 Total: 0.17 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -1.15 Total: -8.51 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.12 Total: -38.88 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.17 Total: -17.80 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -37.32 -9.26 -46.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487398708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.799 kcal (2) G-P(sol) polarization free energy of solvation -37.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds