Wall clock time and date at job start Tue Mar 31 2020 21:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47046 * 116.63147 * 3 2 1 5 5 C 1.52996 * 109.47118 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47159 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 C 1.52997 * 109.47555 * 180.02562 * 9 8 6 11 11 H 1.09000 * 112.84729 * 43.80692 * 10 9 8 12 12 C 1.53782 * 113.61653 * 174.99994 * 10 9 8 13 13 C 1.53780 * 87.07872 * 139.98291 * 12 10 9 14 14 H 1.09000 * 113.61346 * 219.93267 * 13 12 10 15 15 N 1.46504 * 113.61520 * 89.11690 * 13 12 10 16 16 C 1.34780 * 120.00392 * 154.99469 * 15 13 12 17 17 O 1.21286 * 119.99388 * 0.02562 * 16 15 13 18 18 C 1.50692 * 120.00021 * 180.02562 * 16 15 13 19 19 S 1.81007 * 109.46963 * 180.02562 * 18 16 15 20 20 C 1.76203 * 99.99884 * 179.97438 * 19 18 16 21 21 H 1.07993 * 120.00391 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99430 * 179.97438 * 20 19 18 23 23 N 1.31626 * 120.00381 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99337 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47229 * 90.00487 * 24 22 20 26 26 H 1.48501 * 109.46972 * 209.99845 * 24 22 20 27 27 H 1.48495 * 109.47418 * 330.00082 * 24 22 20 28 28 C 1.53774 * 87.08411 * 334.56798 * 13 12 10 29 29 H 4.44645 * 5.63371 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.47177 * 356.63353 * 3 2 1 31 31 H 1.09003 * 109.46522 * 236.62810 * 3 2 1 32 32 H 1.09004 * 109.47131 * 59.99653 * 4 3 2 33 33 H 1.09000 * 109.47504 * 299.99956 * 4 3 2 34 34 H 1.09004 * 109.47066 * 60.00025 * 5 4 3 35 35 H 1.08994 * 109.47405 * 299.99855 * 5 4 3 36 36 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 37 37 H 1.08998 * 109.47134 * 300.00670 * 9 8 6 38 38 H 1.09002 * 109.46857 * 59.99862 * 9 8 6 39 39 H 1.08997 * 113.61383 * 254.53330 * 12 10 9 40 40 H 1.08998 * 113.60973 * 25.43845 * 12 10 9 41 41 H 0.96999 * 119.99517 * 335.00117 * 15 13 12 42 42 H 1.09003 * 109.47164 * 300.00116 * 18 16 15 43 43 H 1.08992 * 109.47539 * 60.00561 * 18 16 15 44 44 H 0.97000 * 120.00181 * 179.97438 * 23 22 20 45 45 H 1.08998 * 113.61544 * 270.88323 * 28 13 12 46 46 H 1.09004 * 113.61702 * 139.97454 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.6475 -1.2894 5 6 4.6857 0.6487 -1.2891 6 6 5.1877 1.2853 -2.5595 7 8 4.3994 1.6978 -3.3838 8 7 6.5127 1.4017 -2.7770 9 6 7.0008 2.0259 -4.0092 10 6 8.5308 2.0316 -4.0067 11 1 8.9570 1.0858 -3.6722 12 6 9.1470 2.5568 -5.3141 13 6 10.1892 3.2763 -4.4417 14 1 10.4392 4.2765 -4.7956 15 7 11.3728 2.4634 -4.1509 16 6 12.5456 3.0605 -3.8600 17 8 12.6209 4.2708 -3.8385 18 6 13.7632 2.2243 -3.5614 19 16 15.1690 3.3093 -3.2110 20 6 16.4171 2.1036 -2.9052 21 1 16.1787 1.0521 -2.9662 22 6 17.7067 2.5056 -2.5857 23 7 17.9974 3.7872 -2.5118 24 14 19.0297 1.2274 -2.2608 25 1 19.7163 0.8910 -3.5338 26 1 20.0173 1.7719 -1.2946 27 1 18.4073 0.0034 -1.6955 28 6 9.1411 3.2629 -3.3165 29 1 -1.0501 -0.0002 0.0000 30 1 3.0098 -1.0250 0.0603 31 1 3.0090 0.5661 0.8583 32 1 2.7919 1.6732 -1.3498 33 1 2.7927 0.0821 -2.1477 34 1 5.0499 -0.3769 -1.2285 35 1 5.0484 1.2144 -0.4310 36 1 7.1433 1.0720 -2.1177 37 1 6.6413 1.4614 -4.8695 38 1 6.6333 3.0504 -4.0676 39 1 9.5699 1.7735 -5.9430 40 1 8.4938 3.2353 -5.8629 41 1 11.3125 1.4954 -4.1678 42 1 13.5669 1.5931 -2.6947 43 1 13.9936 1.5974 -4.4227 44 1 18.8985 4.0680 -2.2882 45 1 8.4864 4.1343 -3.3193 46 1 9.5593 3.0494 -2.3328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001487398708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:11 Heat of formation + Delta-G solvation = -48.006354 kcal Electronic energy + Delta-G solvation = -24657.914518 eV Core-core repulsion = 20867.101802 eV Total energy + Delta-G solvation = -3790.812715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.35707 -40.62249 -39.30809 -36.56228 -35.70465 -34.57611 -34.16543 -33.20527 -30.91027 -29.58522 -27.88063 -27.58193 -26.65007 -24.04402 -22.92656 -22.15466 -21.30672 -20.18233 -19.81180 -19.10163 -18.03874 -17.66573 -17.13243 -17.02248 -16.94202 -16.86542 -16.42053 -16.07249 -15.78310 -15.35975 -15.25847 -14.86701 -14.65575 -14.48017 -14.46644 -13.88209 -13.72881 -13.52522 -13.34463 -13.29738 -13.15203 -12.89262 -12.80975 -12.60277 -12.48583 -11.95137 -11.92118 -11.71660 -11.63449 -11.24719 -11.17102 -11.13148 -10.96918 -10.93964 -10.77960 -10.25561 -10.07118 -9.98290 -8.65320 -8.33533 -6.11483 1.28335 1.43523 1.48619 1.58529 1.61786 1.70410 1.85228 1.92597 2.26027 2.30401 2.30953 3.00982 3.33511 3.50819 3.51817 3.58936 3.82378 3.86446 3.89392 4.00932 4.10229 4.19316 4.32222 4.33592 4.52668 4.52986 4.60501 4.68292 4.71465 4.76061 4.82054 4.83097 4.88149 4.91877 5.08052 5.14565 5.21300 5.21741 5.25327 5.33592 5.43202 5.53006 5.67408 6.21004 6.54315 6.61724 6.72304 7.08086 7.28530 7.32537 8.75685 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019393 B = 0.001448 C = 0.001378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.490386 B =19335.923707 C =20310.270879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.216 4.216 3 C -0.012 4.012 4 C -0.095 4.095 5 C -0.133 4.133 6 C 0.504 3.496 7 O -0.594 6.594 8 N -0.719 5.719 9 C 0.132 3.868 10 C -0.103 4.103 11 H 0.116 0.884 12 C -0.123 4.123 13 C 0.106 3.894 14 H 0.075 0.925 15 N -0.693 5.693 16 C 0.536 3.464 17 O -0.566 6.566 18 C -0.129 4.129 19 S -0.154 6.154 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.997 3.003 25 H -0.269 1.269 26 H -0.279 1.279 27 H -0.257 1.257 28 C -0.143 4.143 29 H 0.238 0.762 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.417 0.583 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.417 0.583 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.271 0.729 45 H 0.092 0.908 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.391 -12.786 2.424 32.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.216 4.216 3 C -0.048 4.048 4 C -0.133 4.133 5 C -0.172 4.172 6 C 0.292 3.708 7 O -0.475 6.475 8 N -0.371 5.371 9 C 0.008 3.992 10 C -0.122 4.122 11 H 0.134 0.866 12 C -0.161 4.161 13 C 0.000 4.000 14 H 0.094 0.906 15 N -0.346 5.346 16 C 0.322 3.678 17 O -0.444 6.444 18 C -0.280 4.280 19 S 0.073 5.927 20 C -0.694 4.694 21 H 0.102 0.898 22 C -0.190 4.190 23 N -0.549 5.549 24 Si 0.819 3.181 25 H -0.194 1.194 26 H -0.204 1.204 27 H -0.180 1.180 28 C -0.182 4.182 29 H 0.254 0.746 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.254 0.746 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.123 0.877 41 H 0.255 0.745 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.080 0.920 45 H 0.110 0.890 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -29.688 -10.362 1.894 31.501 hybrid contribution 0.864 -1.887 0.261 2.091 sum -28.823 -12.248 2.155 31.392 Atomic orbital electron populations 1.25721 0.97164 1.00837 1.00341 1.23893 0.95938 1.00823 1.00994 1.18876 0.83611 1.03575 0.98732 1.21169 0.94238 1.00904 0.96996 1.21711 0.96023 1.04381 0.95128 1.21359 0.82184 0.78250 0.88990 1.90707 1.56619 1.51134 1.49043 1.45986 1.07009 1.61365 1.22750 1.21288 0.93115 0.97809 0.87014 1.22754 0.92964 0.99185 0.97274 0.86570 1.23264 0.96056 1.00661 0.96149 1.21918 0.84360 0.95689 0.98044 0.90644 1.45388 1.07577 1.10691 1.70991 1.20085 0.84476 0.87840 0.75428 1.90698 1.85275 1.16307 1.52146 1.23370 0.95953 1.02456 1.06246 1.85620 1.02607 1.13183 1.91267 1.23212 0.96772 0.94390 1.54997 0.89802 1.26109 1.00565 0.98211 0.94152 1.70182 1.21514 1.16711 1.46461 0.84971 0.76924 0.77830 0.78367 1.19396 1.20413 1.18049 1.23499 0.97342 0.98994 0.98337 0.74565 0.87511 0.87715 0.93047 0.92799 0.85639 0.85980 0.74642 0.91812 0.92477 0.89167 0.87655 0.74547 0.86983 0.87158 0.92028 0.88956 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.98 19.25 74.32 1.43 -1.55 16 2 C -0.22 -3.11 13.34 31.13 0.42 -2.69 16 3 C -0.01 -0.10 5.70 28.79 0.16 0.07 16 4 C -0.09 -1.08 4.46 30.59 0.14 -0.95 16 5 C -0.13 -0.86 5.70 29.85 0.17 -0.69 16 6 C 0.50 7.29 7.83 87.66 0.69 7.98 16 7 O -0.59 -14.76 15.98 -3.04 -0.05 -14.81 16 8 N -0.72 -7.09 5.56 -463.06 -2.57 -9.66 16 9 C 0.13 1.56 5.51 86.38 0.48 2.03 16 10 C -0.10 -0.98 3.63 -10.27 -0.04 -1.02 16 11 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 12 C -0.12 -1.42 7.39 31.12 0.23 -1.19 16 13 C 0.11 2.04 4.32 45.51 0.20 2.24 16 14 H 0.08 1.94 7.46 -2.39 -0.02 1.93 16 15 N -0.69 -15.19 5.26 -440.04 -2.32 -17.50 16 16 C 0.54 18.55 7.85 87.65 0.69 19.24 16 17 O -0.57 -25.46 15.46 -3.05 -0.05 -25.51 16 18 C -0.13 -4.82 6.16 71.23 0.44 -4.39 16 19 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 20 C -0.55 -30.51 9.50 67.95 0.65 -29.86 16 21 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 22 C 0.01 0.80 5.49 84.86 0.47 1.27 16 23 N -0.91 -55.46 13.22 21.65 0.29 -55.17 16 24 Si 1.00 42.69 29.55 68.60 2.03 44.72 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 26 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 28 C -0.14 -2.13 7.43 31.12 0.23 -1.90 16 29 H 0.24 1.55 7.80 -4.41 -0.03 1.52 16 30 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.81 8.10 -2.38 -0.02 0.79 16 33 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 34 H 0.13 0.13 8.14 -2.38 -0.02 0.11 16 35 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.42 1.67 8.47 -92.71 -0.79 0.88 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 0.86 7.85 -2.39 -0.02 0.84 16 39 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.11 1.11 8.10 -2.39 -0.02 1.09 16 41 H 0.42 6.01 8.70 -92.71 -0.81 5.20 16 42 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 43 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 44 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 45 H 0.09 1.38 7.90 -2.39 -0.02 1.36 16 46 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -86.28 410.51 1.90 -84.38 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -0.61 Total: 14.48 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 6.34 Total: -11.41 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -4.60 Total: -82.33 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.10 Total: -40.32 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -86.28 1.90 -84.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487398708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.375 kcal (2) G-P(sol) polarization free energy of solvation -86.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds