Wall clock time and date at job start Tue Mar 31 2020 20:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47265 * 2 1 4 4 C 1.50693 * 109.47012 * 179.97438 * 3 2 1 5 5 C 1.33816 * 124.52553 * 89.72487 * 4 3 2 6 6 C 1.37473 * 115.10201 * 179.85231 * 5 4 3 7 7 C 1.36657 * 113.29844 * 0.41782 * 6 5 4 8 8 C 1.46574 * 125.46041 * 179.79350 * 7 6 5 9 9 O 1.21700 * 120.00492 * 317.13610 * 8 7 6 10 10 N 1.34774 * 120.00013 * 137.13267 * 8 7 6 11 11 C 1.47151 * 120.98146 * 3.56890 * 10 8 7 12 12 C 1.53295 * 108.38786 * 230.51006 * 11 10 8 13 13 O 1.42960 * 109.22463 * 307.70248 * 12 11 10 14 14 C 1.42956 * 114.16846 * 62.57464 * 13 12 11 15 15 H 1.09002 * 109.51264 * 57.34632 * 14 13 12 16 16 C 1.53001 * 109.51510 * 177.44606 * 14 13 12 17 17 N 1.46502 * 109.47028 * 300.00256 * 16 14 13 18 18 C 1.36938 * 120.00056 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00053 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00319 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00330 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99645 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47153 * 90.00052 * 22 20 18 24 24 H 1.48502 * 109.46950 * 210.00254 * 22 20 18 25 25 H 1.48501 * 109.47317 * 330.00217 * 22 20 18 26 26 C 1.47155 * 120.98539 * 183.28838 * 10 8 7 27 27 S 1.70628 * 124.51966 * 270.01921 * 4 3 2 28 28 H 1.09005 * 109.46465 * 60.00411 * 1 2 3 29 29 H 1.09004 * 109.47009 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47506 * 300.00345 * 1 2 3 31 31 H 1.08995 * 109.47506 * 239.99655 * 2 1 3 32 32 H 1.09005 * 109.46989 * 119.99541 * 2 1 3 33 33 H 1.08995 * 109.46818 * 299.99742 * 3 2 1 34 34 H 1.08995 * 109.47140 * 59.99430 * 3 2 1 35 35 H 1.07994 * 122.44797 * 0.02562 * 5 4 3 36 36 H 1.08000 * 123.35569 * 180.21512 * 6 5 4 37 37 H 1.08998 * 109.68708 * 350.24052 * 11 10 8 38 38 H 1.09004 * 109.68231 * 110.78850 * 11 10 8 39 39 H 1.09000 * 109.51006 * 67.62121 * 12 11 10 40 40 H 1.08997 * 109.51294 * 187.77497 * 12 11 10 41 41 H 1.09004 * 109.46852 * 59.99957 * 16 14 13 42 42 H 1.08990 * 109.47621 * 180.02562 * 16 14 13 43 43 H 0.97003 * 119.99945 * 0.02562 * 17 16 14 44 44 H 0.96999 * 119.99815 * 179.97438 * 21 20 18 45 45 H 1.08994 * 109.68039 * 249.21255 * 26 10 8 46 46 H 1.09001 * 109.67651 * 9.76587 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3059 1.4370 -1.1015 6 6 5.6619 1.4413 -0.8759 7 6 5.9891 1.4413 0.4510 8 6 7.3518 1.4410 0.9907 9 8 8.2020 0.7239 0.4967 10 7 7.6635 2.2351 2.0342 11 6 6.6353 3.0524 2.6977 12 6 7.1503 4.4931 2.7935 13 8 8.4463 4.4906 3.3968 14 6 9.4396 3.7869 2.6471 15 1 9.5123 4.2151 1.6474 16 6 10.7918 3.9050 3.3532 17 7 11.1675 5.3173 3.4557 18 6 12.3470 5.6703 4.0552 19 1 13.0001 4.9075 4.4529 20 6 12.7028 7.0085 4.1528 21 7 13.8366 7.3477 4.7286 22 14 11.5728 8.3278 3.4656 23 1 10.6198 8.7611 4.5189 24 1 12.3825 9.4908 3.0217 25 1 10.8179 7.7802 2.3100 26 6 9.0408 2.3058 2.5475 27 16 4.5133 1.4422 1.4069 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.8839 1.4325 -2.0956 36 1 6.3958 1.4411 -1.6683 37 1 5.7150 3.0295 2.1141 38 1 6.4460 2.6630 3.6980 39 1 7.2147 4.9238 1.7943 40 1 6.4664 5.0844 3.4023 41 1 10.7187 3.4750 4.3522 42 1 11.5486 3.3687 2.7809 43 1 10.5804 6.0024 3.0995 44 1 14.0854 8.2828 4.7964 45 1 9.0895 1.8425 3.5329 46 1 9.7142 1.7882 1.8643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570140921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:59 Heat of formation + Delta-G solvation = -31.968691 kcal Electronic energy + Delta-G solvation = -26652.961432 eV Core-core repulsion = 22862.844161 eV Total energy + Delta-G solvation = -3790.117270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.52650 -38.84409 -38.04722 -35.38155 -35.22588 -34.54928 -32.33084 -31.00187 -30.45344 -28.56096 -27.43340 -25.66283 -24.11517 -23.61292 -22.42428 -21.97749 -21.17303 -20.67390 -18.84387 -18.39166 -17.58589 -16.71242 -16.59707 -16.24440 -15.65847 -15.45072 -15.36623 -14.99817 -14.60959 -14.37800 -14.29428 -14.04964 -13.72287 -13.41950 -13.18637 -13.11624 -12.97311 -12.74861 -12.55096 -12.32602 -12.14300 -11.94015 -11.86633 -11.68019 -11.41123 -11.25024 -11.15460 -11.05574 -10.83367 -10.60003 -10.22402 -10.10015 -10.03064 -9.55644 -9.06006 -8.87615 -8.83358 -8.67360 -7.19546 -5.73012 -3.08084 0.20853 0.98624 1.47099 2.09132 2.52826 2.86224 3.41866 3.46196 3.48721 3.78183 4.12235 4.21259 4.41316 4.50296 4.55050 4.63943 4.73923 4.77995 4.91894 4.94238 4.95769 5.00565 5.14655 5.16425 5.21594 5.25684 5.31158 5.51580 5.52793 5.53401 5.55964 5.56486 5.65352 5.70776 5.74279 5.78146 5.79500 5.92565 6.00119 6.15462 6.46132 6.59208 7.04071 7.28010 7.82440 8.02377 8.45669 9.25144 9.97439 10.17826 11.45265 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024866 B = 0.002274 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.784047 B =12312.371428 C =12780.272375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.051 4.051 4 C -0.204 4.204 5 C -0.148 4.148 6 C -0.059 4.059 7 C -0.264 4.264 8 C 0.592 3.408 9 O -0.524 6.524 10 N -0.607 5.607 11 C 0.059 3.941 12 C 0.048 3.952 13 O -0.359 6.359 14 C 0.069 3.931 15 H 0.064 0.936 16 C 0.168 3.832 17 N -0.750 5.750 18 C -0.243 4.243 19 H 0.091 0.909 20 C 0.004 3.996 21 N -0.934 5.934 22 Si 0.887 3.113 23 H -0.283 1.283 24 H -0.292 1.292 25 H -0.278 1.278 26 C 0.088 3.912 27 S 0.215 5.785 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.143 0.857 36 H 0.150 0.850 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.107 0.893 41 H 0.038 0.962 42 H 0.045 0.955 43 H 0.365 0.635 44 H 0.259 0.741 45 H 0.083 0.917 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.800 -14.294 -10.419 34.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.090 4.090 4 C -0.323 4.323 5 C -0.179 4.179 6 C -0.091 4.091 7 C -0.385 4.385 8 C 0.379 3.621 9 O -0.402 6.402 10 N -0.341 5.341 11 C -0.065 4.065 12 C -0.031 4.031 13 O -0.277 6.277 14 C 0.010 3.990 15 H 0.082 0.918 16 C 0.040 3.960 17 N -0.395 5.395 18 C -0.373 4.373 19 H 0.109 0.891 20 C -0.191 4.191 21 N -0.582 5.582 22 Si 0.717 3.283 23 H -0.210 1.210 24 H -0.219 1.219 25 H -0.205 1.205 26 C -0.034 4.034 27 S 0.483 5.517 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.161 0.839 36 H 0.168 0.832 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.125 0.875 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.198 0.802 44 H 0.069 0.931 45 H 0.102 0.898 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -29.388 -14.617 -8.835 33.991 hybrid contribution -0.605 0.949 -2.302 2.563 sum -29.994 -13.668 -11.137 34.792 Atomic orbital electron populations 1.21782 0.95203 1.02050 1.02017 1.21573 0.96047 0.95480 1.02825 1.20253 0.87030 0.98127 1.03639 1.24400 1.01304 1.08251 0.98383 1.19922 0.92426 1.05922 0.99627 1.20671 0.96345 0.97350 0.94770 1.24474 0.97025 1.18714 0.98240 1.17029 0.86010 0.79765 0.79326 1.90848 1.49219 1.40568 1.59530 1.48030 1.10436 1.43619 1.32005 1.22884 0.91661 0.92972 0.99010 1.22908 0.86481 0.94288 0.99374 1.88143 1.17241 1.74700 1.47632 1.22965 0.90016 0.89802 0.96184 0.91787 1.20611 0.89216 0.88225 0.97938 1.42542 1.23526 1.01257 1.72222 1.19055 0.95302 0.93088 1.29856 0.89142 1.24652 0.97045 0.96752 1.00680 1.69704 1.22829 1.16697 1.49003 0.86504 0.80477 0.82259 0.79020 1.21000 1.21855 1.20471 1.22471 0.81878 0.98088 1.01008 1.83174 0.93301 1.67907 1.07271 0.92530 0.92388 0.92533 0.91456 0.91687 0.89747 0.90548 0.83927 0.83244 0.88739 0.89743 0.92745 0.87478 0.94394 0.93718 0.80223 0.93096 0.89835 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.91 37.16 0.37 -0.22 16 2 C -0.12 -0.58 5.92 -26.73 -0.16 -0.74 16 3 C -0.05 -0.26 5.65 -27.88 -0.16 -0.41 16 4 C -0.20 -1.46 5.53 -35.86 -0.20 -1.66 16 5 C -0.15 -1.15 10.00 -41.41 -0.41 -1.57 16 6 C -0.06 -0.58 10.22 -40.43 -0.41 -0.99 16 7 C -0.26 -2.91 5.55 -36.79 -0.20 -3.11 16 8 C 0.59 8.17 7.56 -12.90 -0.10 8.08 16 9 O -0.52 -8.96 16.56 5.19 0.09 -8.87 16 10 N -0.61 -7.78 3.01 -173.60 -0.52 -8.30 16 11 C 0.06 0.60 5.99 -3.53 -0.02 0.58 16 12 C 0.05 0.56 6.98 37.31 0.26 0.82 16 13 O -0.36 -5.84 10.13 -35.23 -0.36 -6.20 16 14 C 0.07 1.12 2.88 -26.36 -0.08 1.04 16 15 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 16 C 0.17 3.30 5.96 -4.04 -0.02 3.28 16 17 N -0.75 -18.46 5.30 -59.91 -0.32 -18.77 16 18 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 19 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 20 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 21 N -0.93 -29.79 13.97 55.49 0.78 -29.02 16 22 Si 0.89 22.75 27.73 -169.99 -4.71 18.04 16 23 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 25 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 26 C 0.09 1.22 5.94 -3.31 -0.02 1.20 16 27 S 0.21 1.71 19.72 -107.50 -2.12 -0.41 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.10 0.81 4.12 -30.33 -0.12 0.68 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.36 8.93 5.41 -40.82 -0.22 8.71 16 44 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.11 1.52 7.10 -51.93 -0.37 1.15 16 LS Contribution 384.32 15.07 5.79 5.79 Total: -1.00 -35.09 384.32 -9.86 -44.95 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.07 Total: 3.67 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.41 Total: -0.88 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.07 Total: -56.09 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.27 Total: -15.07 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.71 Total: 18.04 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.12 Total: -0.41 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.09 -9.86 -44.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570140921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.984 kcal (2) G-P(sol) polarization free energy of solvation -35.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds