Wall clock time and date at job start Tue Mar 31 2020 21:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32866 * 1 3 3 C 1.47122 * 120.00174 * 2 1 4 4 C 1.50699 * 119.99691 * 5.49139 * 3 2 1 5 5 C 1.32869 * 119.99887 * 185.49485 * 3 2 1 6 6 C 1.50695 * 120.00264 * 6.24585 * 5 3 2 7 7 C 1.50704 * 109.46836 * 126.12503 * 6 5 3 8 8 O 1.21280 * 120.00111 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99742 * 179.97438 * 7 6 5 10 10 C 1.47428 * 125.64885 * 359.97438 * 9 7 6 11 11 C 1.54900 * 104.82939 * 155.90329 * 10 9 7 12 12 C 1.55154 * 101.58624 * 37.00827 * 11 10 9 13 13 H 1.09001 * 110.71912 * 83.03979 * 12 11 10 14 14 N 1.46502 * 110.72135 * 206.13335 * 12 11 10 15 15 C 1.34771 * 119.99986 * 271.15325 * 14 12 11 16 16 O 1.21284 * 120.00216 * 0.28076 * 15 14 12 17 17 C 1.50703 * 120.00235 * 179.97438 * 15 14 12 18 18 S 1.80999 * 109.47409 * 180.02562 * 17 15 14 19 19 C 1.76197 * 99.99955 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99945 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00358 * 179.97438 * 19 18 17 22 22 N 1.31635 * 119.99632 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00469 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46969 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47043 * 120.00026 * 23 21 19 26 26 H 1.48496 * 109.47188 * 240.00252 * 23 21 19 27 27 C 1.47317 * 125.61587 * 180.19735 * 9 7 6 28 28 H 1.08001 * 120.00151 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00125 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00125 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47443 * 269.99925 * 4 3 2 32 32 H 1.08995 * 109.46995 * 30.00183 * 4 3 2 33 33 H 1.09000 * 109.46719 * 150.00308 * 4 3 2 34 34 H 1.07998 * 119.99618 * 186.25043 * 5 3 2 35 35 H 1.09002 * 109.47214 * 6.12518 * 6 5 3 36 36 H 1.08999 * 109.47263 * 246.12724 * 6 5 3 37 37 H 1.09002 * 110.36564 * 37.06326 * 10 9 7 38 38 H 1.09000 * 110.45590 * 274.78617 * 10 9 7 39 39 H 1.09001 * 111.00660 * 278.93074 * 11 10 9 40 40 H 1.09010 * 111.00691 * 155.08480 * 11 10 9 41 41 H 0.97001 * 119.99998 * 91.15679 * 14 12 11 42 42 H 1.08996 * 109.47215 * 300.00640 * 17 15 14 43 43 H 1.09003 * 109.46458 * 60.00180 * 17 15 14 44 44 H 0.96994 * 120.00005 * 179.97438 * 22 21 19 45 45 H 1.09007 * 110.06441 * 61.68311 * 27 9 7 46 46 H 1.09003 * 109.84856 * 300.42996 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3160 2.5762 0.1249 5 6 3.3884 1.2767 -0.1102 6 6 4.1249 -0.0109 -0.3761 7 6 5.0036 0.1545 -1.5893 8 8 5.0296 1.2137 -2.1794 9 7 5.7614 -0.8745 -2.0177 10 6 5.8272 -2.2100 -1.3969 11 6 6.2884 -3.1541 -2.5351 12 6 7.2937 -2.2527 -3.2994 13 1 8.2736 -2.2774 -2.8226 14 7 7.3921 -2.6605 -4.7031 15 6 8.2871 -3.5984 -5.0712 16 8 9.0077 -4.1085 -4.2397 17 6 8.3879 -4.0183 -6.5151 18 16 9.6705 -5.2837 -6.6873 19 6 9.5762 -5.5809 -8.4215 20 1 8.8657 -5.0355 -9.0250 21 6 10.4157 -6.5151 -9.0123 22 7 11.2820 -7.1795 -8.2768 23 14 10.3162 -6.8297 -10.8509 24 1 9.2694 -5.9605 -11.4458 25 1 11.6275 -6.5238 -11.4771 26 1 9.9729 -8.2542 -11.0915 27 6 6.6644 -0.8486 -3.1814 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8687 -0.9353 0.0004 31 1 1.0504 2.9393 -0.8679 32 1 0.4092 2.4195 0.7091 33 1 1.9472 3.3115 0.6239 34 1 3.9368 2.2015 -0.0091 35 1 3.4060 -0.8106 -0.5544 36 1 4.7410 -0.2620 0.4873 37 1 4.8441 -2.5076 -1.0320 38 1 6.5513 -2.2161 -0.5821 39 1 5.4508 -3.4342 -3.1739 40 1 6.7836 -4.0381 -2.1330 41 1 6.8130 -2.2554 -5.3675 42 1 7.4311 -4.4243 -6.8431 43 1 8.6451 -3.1540 -7.1276 44 1 11.8683 -7.8327 -8.6896 45 1 7.4459 -0.1035 -3.0319 46 1 6.0983 -0.6190 -4.0841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687175708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:34 Heat of formation + Delta-G solvation = -37.604878 kcal Electronic energy + Delta-G solvation = -25434.842399 eV Core-core repulsion = 21644.480726 eV Total energy + Delta-G solvation = -3790.361674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.57827 -39.32034 -37.79757 -37.05792 -34.22433 -32.49105 -32.45346 -31.23956 -30.32409 -29.62626 -28.18097 -25.88676 -25.47947 -23.58100 -22.27600 -21.54266 -20.54262 -19.68702 -18.01299 -17.90559 -17.54893 -16.99580 -16.31609 -16.12573 -15.92251 -15.32247 -14.93773 -14.82785 -14.76002 -14.48219 -13.97314 -13.81185 -13.71532 -13.28145 -13.15421 -12.96210 -12.88693 -12.67547 -12.64874 -12.41924 -12.35282 -12.03827 -11.96345 -11.68775 -11.20533 -11.08964 -11.05652 -11.04300 -10.85687 -10.78065 -10.19652 -9.83749 -9.51215 -9.13138 -9.08626 -8.96095 -8.63434 -8.27451 -6.53474 -6.24671 -3.95409 0.92572 2.30918 2.40434 2.70502 2.97501 3.02964 3.19930 3.26740 3.31224 3.65220 4.03382 4.17690 4.22189 4.24544 4.44840 4.49998 4.62123 4.76041 4.85585 4.87520 4.93452 5.00654 5.10305 5.10920 5.12100 5.16334 5.25251 5.26786 5.36996 5.41417 5.50536 5.59689 5.62768 5.72661 5.81777 5.84353 5.92648 5.96252 6.02298 6.09840 6.30233 6.50257 6.52270 7.11407 7.56806 7.58606 7.82360 8.32792 8.50117 9.21099 10.82827 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027247 B = 0.001629 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.397416 B =17187.570792 C =17407.012686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.129 4.129 3 C -0.107 4.107 4 C -0.116 4.116 5 C -0.122 4.122 6 C -0.113 4.113 7 C 0.533 3.467 8 O -0.536 6.536 9 N -0.620 5.620 10 C 0.099 3.901 11 C -0.146 4.146 12 C 0.137 3.863 13 H 0.107 0.893 14 N -0.731 5.731 15 C 0.536 3.464 16 O -0.514 6.514 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.103 3.897 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.400 0.600 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.268 0.732 45 H 0.078 0.922 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.775 15.069 18.445 30.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.147 4.147 3 C -0.107 4.107 4 C -0.172 4.172 5 C -0.140 4.140 6 C -0.152 4.152 7 C 0.322 3.678 8 O -0.412 6.412 9 N -0.356 5.356 10 C -0.024 4.024 11 C -0.185 4.185 12 C 0.031 3.969 13 H 0.125 0.875 14 N -0.385 5.385 15 C 0.322 3.678 16 O -0.388 6.388 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.206 1.206 27 C -0.020 4.020 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.134 0.866 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.139 0.861 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.235 0.765 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.446 14.728 19.542 30.644 hybrid contribution -1.117 0.419 -2.492 2.763 sum -19.563 15.147 17.049 30.047 Atomic orbital electron populations 1.24459 0.95745 1.02176 0.99283 1.21964 0.95410 0.96258 1.01026 1.20586 0.93824 0.94440 1.01828 1.20793 1.00050 0.94108 1.02259 1.22777 0.94057 0.97684 0.99515 1.20803 0.98930 0.98824 0.96675 1.20249 0.79493 0.82465 0.85593 1.90725 1.65977 1.26466 1.58037 1.48529 1.43789 1.12937 1.30298 1.22409 1.02091 0.81411 0.96499 1.23257 0.99757 0.98568 0.96951 1.21829 1.00052 0.91714 0.83308 0.87541 1.45976 1.40880 1.43301 1.08382 1.20339 0.78670 0.78047 0.90712 1.90705 1.42066 1.53085 1.52952 1.23539 1.06910 1.05674 0.94349 1.85383 1.42533 1.44541 1.10832 1.22910 1.25048 1.27467 0.92978 0.90841 1.24993 0.94475 0.94893 0.99200 1.70024 1.20482 1.23999 1.35769 0.86112 0.78159 0.78214 0.82989 1.19616 1.20547 1.20552 1.22145 0.93302 0.97108 0.89433 0.88047 0.88033 0.86560 0.91181 0.91735 0.91551 0.86136 0.87922 0.87827 0.90193 0.90549 0.90012 0.88691 0.76518 0.89115 0.89096 0.92212 0.90333 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.02 14.07 28.88 0.41 -0.61 16 2 C -0.13 -0.84 9.20 -37.83 -0.35 -1.19 16 3 C -0.11 -0.79 5.98 -102.87 -0.61 -1.40 16 4 C -0.12 -0.70 9.38 36.01 0.34 -0.36 16 5 C -0.12 -0.97 8.43 -36.16 -0.30 -1.27 16 6 C -0.11 -0.78 4.93 -29.04 -0.14 -0.92 16 7 C 0.53 5.46 7.84 -10.98 -0.09 5.37 16 8 O -0.54 -7.62 16.36 5.56 0.09 -7.53 16 9 N -0.62 -5.56 3.33 -170.28 -0.57 -6.13 16 10 C 0.10 0.65 6.69 -2.53 -0.02 0.63 16 11 C -0.15 -1.27 6.77 -24.59 -0.17 -1.43 16 12 C 0.14 1.44 3.26 -66.10 -0.22 1.22 16 13 H 0.11 1.27 7.62 -51.93 -0.40 0.87 16 14 N -0.73 -8.87 5.19 -52.03 -0.27 -9.15 16 15 C 0.54 9.31 7.85 -10.99 -0.09 9.22 16 16 O -0.51 -10.89 15.55 5.55 0.09 -10.80 16 17 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 19 C -0.54 -15.05 9.50 30.94 0.29 -14.76 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.86 13.22 55.49 0.73 -25.12 16 23 Si 0.92 21.21 29.55 -169.99 -5.02 16.18 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 C 0.10 1.00 6.64 -2.91 -0.02 0.98 16 28 H 0.10 0.45 8.06 -52.49 -0.42 0.03 16 29 H 0.10 0.51 6.31 -52.49 -0.33 0.18 16 30 H 0.12 0.61 6.00 -52.49 -0.31 0.30 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.32 6.67 -51.93 -0.35 -0.03 16 33 H 0.07 0.36 8.06 -51.93 -0.42 -0.05 16 34 H 0.12 1.01 8.04 -52.49 -0.42 0.59 16 35 H 0.10 0.56 5.12 -51.93 -0.27 0.29 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.37 7.48 -51.93 -0.39 -0.02 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 41 H 0.40 3.86 8.34 -40.82 -0.34 3.52 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 46 H 0.07 0.72 7.70 -51.93 -0.40 0.32 16 LS Contribution 397.95 15.07 6.00 6.00 Total: -1.00 -35.98 397.95 -8.98 -44.95 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.97 Total: 0.67 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -0.84 Total: -5.30 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: -0.10 Total: -40.39 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.18 Total: -18.33 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.98 -8.98 -44.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687175708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.348 kcal (2) G-P(sol) polarization free energy of solvation -35.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds