Wall clock time and date at job start Tue Mar 31 2020 21:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32866 * 1 3 3 C 1.47122 * 120.00174 * 2 1 4 4 C 1.50699 * 119.99691 * 5.49139 * 3 2 1 5 5 C 1.32869 * 119.99887 * 185.49485 * 3 2 1 6 6 C 1.50695 * 120.00264 * 6.24585 * 5 3 2 7 7 C 1.50704 * 109.46836 * 126.12503 * 6 5 3 8 8 O 1.21280 * 120.00111 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99742 * 179.97438 * 7 6 5 10 10 C 1.47428 * 125.64885 * 359.97438 * 9 7 6 11 11 C 1.54900 * 104.82939 * 155.90329 * 10 9 7 12 12 C 1.55154 * 101.58624 * 37.00827 * 11 10 9 13 13 H 1.09001 * 110.71912 * 83.03979 * 12 11 10 14 14 N 1.46502 * 110.72135 * 206.13335 * 12 11 10 15 15 C 1.34771 * 119.99986 * 271.15325 * 14 12 11 16 16 O 1.21284 * 120.00216 * 0.28076 * 15 14 12 17 17 C 1.50703 * 120.00235 * 179.97438 * 15 14 12 18 18 S 1.80999 * 109.47409 * 180.02562 * 17 15 14 19 19 C 1.76197 * 99.99955 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99945 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00358 * 179.97438 * 19 18 17 22 22 N 1.31635 * 119.99632 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00469 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46969 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47043 * 120.00026 * 23 21 19 26 26 H 1.48496 * 109.47188 * 240.00252 * 23 21 19 27 27 C 1.47317 * 125.61587 * 180.19735 * 9 7 6 28 28 H 1.08001 * 120.00151 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00125 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00125 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47443 * 269.99925 * 4 3 2 32 32 H 1.08995 * 109.46995 * 30.00183 * 4 3 2 33 33 H 1.09000 * 109.46719 * 150.00308 * 4 3 2 34 34 H 1.07998 * 119.99618 * 186.25043 * 5 3 2 35 35 H 1.09002 * 109.47214 * 6.12518 * 6 5 3 36 36 H 1.08999 * 109.47263 * 246.12724 * 6 5 3 37 37 H 1.09002 * 110.36564 * 37.06326 * 10 9 7 38 38 H 1.09000 * 110.45590 * 274.78617 * 10 9 7 39 39 H 1.09001 * 111.00660 * 278.93074 * 11 10 9 40 40 H 1.09010 * 111.00691 * 155.08480 * 11 10 9 41 41 H 0.97001 * 119.99998 * 91.15679 * 14 12 11 42 42 H 1.08996 * 109.47215 * 300.00640 * 17 15 14 43 43 H 1.09003 * 109.46458 * 60.00180 * 17 15 14 44 44 H 0.96994 * 120.00005 * 179.97438 * 22 21 19 45 45 H 1.09007 * 110.06441 * 61.68311 * 27 9 7 46 46 H 1.09003 * 109.84856 * 300.42996 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3160 2.5762 0.1249 5 6 3.3884 1.2767 -0.1102 6 6 4.1249 -0.0109 -0.3761 7 6 5.0036 0.1545 -1.5893 8 8 5.0296 1.2137 -2.1794 9 7 5.7614 -0.8745 -2.0177 10 6 5.8272 -2.2100 -1.3969 11 6 6.2884 -3.1541 -2.5351 12 6 7.2937 -2.2527 -3.2994 13 1 8.2736 -2.2774 -2.8226 14 7 7.3921 -2.6605 -4.7031 15 6 8.2871 -3.5984 -5.0712 16 8 9.0077 -4.1085 -4.2397 17 6 8.3879 -4.0183 -6.5151 18 16 9.6705 -5.2837 -6.6873 19 6 9.5762 -5.5809 -8.4215 20 1 8.8657 -5.0355 -9.0250 21 6 10.4157 -6.5151 -9.0123 22 7 11.2820 -7.1795 -8.2768 23 14 10.3162 -6.8297 -10.8509 24 1 9.2694 -5.9605 -11.4458 25 1 11.6275 -6.5238 -11.4771 26 1 9.9729 -8.2542 -11.0915 27 6 6.6644 -0.8486 -3.1814 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8687 -0.9353 0.0004 31 1 1.0504 2.9393 -0.8679 32 1 0.4092 2.4195 0.7091 33 1 1.9472 3.3115 0.6239 34 1 3.9368 2.2015 -0.0091 35 1 3.4060 -0.8106 -0.5544 36 1 4.7410 -0.2620 0.4873 37 1 4.8441 -2.5076 -1.0320 38 1 6.5513 -2.2161 -0.5821 39 1 5.4508 -3.4342 -3.1739 40 1 6.7836 -4.0381 -2.1330 41 1 6.8130 -2.2554 -5.3675 42 1 7.4311 -4.4243 -6.8431 43 1 8.6451 -3.1540 -7.1276 44 1 11.8683 -7.8327 -8.6896 45 1 7.4459 -0.1035 -3.0319 46 1 6.0983 -0.6190 -4.0841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687175708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:33 Heat of formation + Delta-G solvation = -61.404083 kcal Electronic energy + Delta-G solvation = -25435.874410 eV Core-core repulsion = 21644.480726 eV Total energy + Delta-G solvation = -3791.393684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.42891 -40.49360 -38.64845 -37.69578 -35.34096 -34.58092 -33.08696 -32.15586 -30.87464 -30.71025 -29.18597 -27.65844 -26.46279 -24.27143 -22.81924 -22.45829 -21.71035 -20.41218 -19.85090 -18.47158 -18.31819 -18.11312 -17.38426 -17.00371 -16.87712 -16.69948 -16.39401 -16.12333 -15.71283 -15.35317 -15.11819 -14.79009 -14.53743 -14.40752 -14.31279 -13.89554 -13.66618 -13.55157 -13.39715 -13.23654 -13.15690 -12.98486 -12.92893 -12.89633 -12.69243 -12.55449 -12.44409 -11.96288 -11.71006 -11.53338 -11.33092 -11.15674 -11.02970 -10.95505 -10.27109 -10.18260 -9.76719 -9.13412 -8.65569 -8.34935 -6.12225 0.43039 1.25432 1.41281 1.45205 1.55615 1.56928 1.58649 1.78679 2.16492 2.26988 2.37787 2.99546 3.27779 3.32840 3.53436 3.71888 3.82689 3.93224 3.99716 4.00794 4.15102 4.17669 4.27088 4.31352 4.40082 4.52335 4.53925 4.58701 4.67079 4.72727 4.76648 4.77079 4.79898 4.94862 4.98479 5.06586 5.15088 5.18397 5.42643 5.43522 5.49366 5.57653 5.81842 6.03944 6.20228 6.38832 6.46079 7.07045 7.07284 7.20131 8.74421 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027247 B = 0.001629 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.397416 B =17187.570792 C =17407.012686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.146 4.146 3 C -0.108 4.108 4 C -0.119 4.119 5 C -0.143 4.143 6 C -0.103 4.103 7 C 0.529 3.471 8 O -0.584 6.584 9 N -0.618 5.618 10 C 0.103 3.897 11 C -0.142 4.142 12 C 0.136 3.864 13 H 0.091 0.909 14 N -0.707 5.707 15 C 0.541 3.459 16 O -0.558 6.558 17 C -0.132 4.132 18 S -0.147 6.147 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.015 3.985 22 N -0.910 5.910 23 Si 0.997 3.003 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.273 1.273 27 C 0.108 3.892 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.130 0.870 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.416 0.584 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.271 0.729 45 H 0.071 0.929 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.217 15.256 18.413 32.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.108 4.108 4 C -0.176 4.176 5 C -0.161 4.161 6 C -0.142 4.142 7 C 0.320 3.680 8 O -0.464 6.464 9 N -0.352 5.352 10 C -0.019 4.019 11 C -0.181 4.181 12 C 0.030 3.970 13 H 0.109 0.891 14 N -0.361 5.361 15 C 0.327 3.673 16 O -0.435 6.435 17 C -0.283 4.283 18 S 0.081 5.919 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.199 1.199 27 C -0.016 4.016 28 H 0.133 0.867 29 H 0.122 0.878 30 H 0.148 0.852 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.129 0.871 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.253 0.747 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.931 14.932 19.527 32.286 hybrid contribution -0.464 0.462 -2.405 2.492 sum -21.395 15.394 17.122 31.431 Atomic orbital electron populations 1.24677 0.95656 1.03046 0.97678 1.22111 0.95845 0.96276 1.02175 1.20829 0.93845 0.95371 1.00774 1.20846 1.00551 0.93876 1.02295 1.22789 0.94441 0.97861 1.01019 1.20818 0.98848 0.98824 0.95719 1.20883 0.79357 0.81777 0.86014 1.90703 1.67612 1.28381 1.59705 1.48593 1.43012 1.13691 1.29947 1.22570 1.04262 0.79341 0.95746 1.23205 0.99059 0.98334 0.97472 1.21898 1.00148 0.92939 0.81998 0.89061 1.45691 1.39226 1.41329 1.09821 1.19971 0.79127 0.78745 0.89446 1.90697 1.44142 1.55075 1.53626 1.23385 1.04819 1.03710 0.96391 1.85524 1.46689 1.48264 1.11471 1.23249 1.25294 1.27709 0.93249 0.89986 1.26092 0.93854 0.94455 1.04619 1.70180 1.21530 1.24829 1.38154 0.84927 0.78552 0.78364 0.76246 1.18155 1.20016 1.19885 1.21999 0.93355 0.96046 0.90155 0.86678 0.87774 0.85218 0.91512 0.90564 0.91399 0.87575 0.85955 0.85494 0.87122 0.89095 0.89539 0.89409 0.74681 0.87103 0.87358 0.91988 0.91040 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 14.07 66.64 0.94 -0.61 16 2 C -0.15 -1.56 9.20 23.43 0.22 -1.35 16 3 C -0.11 -1.46 5.98 -18.71 -0.11 -1.57 16 4 C -0.12 -1.35 9.38 71.24 0.67 -0.69 16 5 C -0.14 -2.14 8.43 24.51 0.21 -1.94 16 6 C -0.10 -1.19 4.93 29.10 0.14 -1.04 16 7 C 0.53 10.09 7.84 87.66 0.69 10.77 16 8 O -0.58 -16.57 16.36 -3.03 -0.05 -16.62 16 9 N -0.62 -9.87 3.33 -811.04 -2.70 -12.57 16 10 C 0.10 1.05 6.69 86.85 0.58 1.63 16 11 C -0.14 -2.16 6.77 31.98 0.22 -1.95 16 12 C 0.14 2.68 3.26 46.18 0.15 2.83 16 13 H 0.09 2.16 7.62 -2.39 -0.02 2.14 16 14 N -0.71 -16.15 5.19 -436.93 -2.27 -18.42 16 15 C 0.54 18.50 7.85 87.66 0.69 19.18 16 16 O -0.56 -23.98 15.55 -3.04 -0.05 -24.03 16 17 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 18 S -0.15 -7.94 20.57 -56.49 -1.16 -9.10 16 19 C -0.55 -30.82 9.50 67.95 0.65 -30.18 16 20 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 21 C 0.01 0.83 5.49 84.86 0.47 1.29 16 22 N -0.91 -55.28 13.22 21.65 0.29 -54.99 16 23 Si 1.00 43.22 29.55 68.60 2.03 45.25 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 C 0.11 1.96 6.64 86.67 0.58 2.53 16 28 H 0.12 0.70 8.06 -2.91 -0.02 0.67 16 29 H 0.10 0.84 6.31 -2.91 -0.02 0.82 16 30 H 0.13 0.95 6.00 -2.91 -0.02 0.94 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.66 6.67 -2.39 -0.02 0.64 16 33 H 0.07 0.73 8.06 -2.39 -0.02 0.71 16 34 H 0.11 1.84 8.04 -2.91 -0.02 1.82 16 35 H 0.12 0.91 5.12 -2.39 -0.01 0.90 16 36 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.11 0.53 7.48 -2.39 -0.02 0.51 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.42 7.09 8.34 -92.71 -0.77 6.31 16 42 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 43 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 44 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 45 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 46 H 0.08 1.37 7.70 -2.39 -0.02 1.35 16 Total: -1.00 -80.89 397.95 2.81 -78.08 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.21 Total: 18.05 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 6.51 Total: -5.63 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -4.68 Total: -85.99 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -0.10 Total: -40.65 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.10 kcal Total: -80.89 2.81 -78.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687175708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.674 kcal (2) G-P(sol) polarization free energy of solvation -80.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds