Wall clock time and date at job start Tue Mar 31 2020 21:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47326 * 2 1 4 4 C 1.50694 * 119.99972 * 275.00350 * 3 2 1 5 5 C 1.33000 * 119.99802 * 94.99739 * 3 2 1 6 6 C 1.47105 * 119.99562 * 172.83988 * 5 3 2 7 7 O 1.21616 * 119.99946 * 354.01105 * 6 5 3 8 8 N 1.34770 * 119.99625 * 174.28741 * 6 5 3 9 9 C 1.46504 * 120.00201 * 179.72720 * 8 6 5 10 10 H 1.09002 * 115.51277 * 350.41742 * 9 8 6 11 11 C 1.52998 * 117.44714 * 204.99942 * 9 8 6 12 12 H 1.09001 * 119.53487 * 4.11579 * 11 9 8 13 13 C 1.54379 * 118.12450 * 159.20979 * 11 9 8 14 14 N 1.51831 * 102.86780 * 88.01862 * 13 11 9 15 15 C 1.34774 * 127.60914 * 140.54413 * 14 13 11 16 16 O 1.21283 * 119.99954 * 179.66725 * 15 14 13 17 17 C 1.50703 * 120.00255 * 359.66572 * 15 14 13 18 18 S 1.80996 * 109.46966 * 179.97438 * 17 15 14 19 19 C 1.76206 * 99.99768 * 180.02562 * 18 17 15 20 20 H 1.07992 * 119.99974 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99846 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99778 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99600 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47466 * 59.99739 * 23 21 19 25 25 H 1.48506 * 109.46873 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46940 * 299.98977 * 23 21 19 27 27 C 1.48144 * 104.54975 * 320.27391 * 14 13 11 28 28 C 1.53001 * 117.44502 * 135.75576 * 9 8 6 29 29 H 1.09003 * 119.54013 * 355.88503 * 28 9 8 30 30 H 1.08997 * 109.47247 * 59.99574 * 1 2 3 31 31 H 1.09000 * 109.47316 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47086 * 300.00016 * 1 2 3 33 33 H 1.09006 * 109.47086 * 239.99984 * 2 1 3 34 34 H 1.08997 * 109.47247 * 120.00426 * 2 1 3 35 35 H 1.08997 * 109.47279 * 264.38729 * 4 3 2 36 36 H 1.09007 * 109.47488 * 24.38726 * 4 3 2 37 37 H 1.09002 * 109.47448 * 144.38783 * 4 3 2 38 38 H 1.07995 * 120.00242 * 352.84524 * 5 3 2 39 39 H 0.96998 * 120.00263 * 359.72455 * 8 6 5 40 40 H 1.09000 * 110.41074 * 205.97992 * 13 11 9 41 41 H 1.09002 * 110.40919 * 328.41136 * 13 11 9 42 42 H 1.09001 * 109.46756 * 299.99887 * 17 15 14 43 43 H 1.08996 * 109.46719 * 59.99817 * 17 15 14 44 44 H 0.97008 * 119.99747 * 180.02562 * 22 21 19 45 45 H 1.09001 * 110.40480 * 281.07294 * 27 14 13 46 46 H 1.09003 * 110.50822 * 158.69486 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1762 2.1691 -1.3001 5 6 2.3486 2.0143 1.1475 6 6 2.9857 3.3402 1.1385 7 8 3.3223 3.8460 0.0850 8 7 3.2014 3.9919 2.2983 9 6 3.8413 5.3098 2.2900 10 1 4.2586 5.6230 1.3330 11 6 4.5811 5.7425 3.5574 12 1 4.6702 5.0467 4.3916 13 6 5.6464 6.8531 3.4348 14 7 4.8334 8.1228 3.6138 15 6 5.1825 9.2344 4.2912 16 8 4.4225 10.1783 4.3405 17 6 6.5173 9.3046 4.9873 18 16 6.6897 10.9124 5.8006 19 6 8.2908 10.7252 6.5120 20 1 8.8407 9.8066 6.3702 21 6 8.8450 11.7580 7.2555 22 7 8.1745 12.8774 7.4287 23 14 10.5427 11.5598 8.0091 24 1 11.5370 11.3190 6.9328 25 1 10.9036 12.7963 8.7482 26 1 10.5372 10.4069 8.9451 27 6 3.5764 7.8675 2.8725 28 6 3.2339 6.3943 3.1821 29 1 2.3194 6.1839 3.7369 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.2046 2.0905 -1.6527 36 1 1.5037 1.7399 -2.0428 37 1 1.9245 3.2183 -1.1453 38 1 2.1378 1.5228 2.0857 39 1 2.9329 3.5885 3.1385 40 1 6.3873 6.7584 4.2287 41 1 6.1278 6.8119 2.4577 42 1 6.5805 8.5115 5.7324 43 1 7.3155 9.1804 4.2557 44 1 8.5620 13.5994 7.9480 45 1 3.7317 8.0048 1.8024 46 1 2.7830 8.5250 3.2281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737526708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:12 Heat of formation + Delta-G solvation = -21.676002 kcal Electronic energy + Delta-G solvation = -25395.738612 eV Core-core repulsion = 21606.067667 eV Total energy + Delta-G solvation = -3789.670946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.70995 -39.71929 -38.09525 -36.61285 -34.77474 -32.49514 -32.41946 -31.36868 -29.77106 -28.37247 -28.04021 -25.70799 -25.31417 -24.46304 -22.05612 -21.26694 -20.42136 -19.41694 -19.00479 -17.71241 -17.45328 -17.04025 -16.35527 -15.45788 -15.36493 -15.20231 -15.09599 -14.92997 -14.80027 -14.18108 -13.91119 -13.83572 -13.61336 -13.38423 -13.19337 -12.98145 -12.71998 -12.64238 -12.54695 -12.27300 -12.11652 -11.91838 -11.87273 -11.81902 -11.45411 -11.15940 -11.04164 -11.03683 -10.77819 -10.42044 -9.98660 -9.82850 -9.63352 -9.37404 -9.05933 -9.05575 -8.65141 -8.23685 -6.50219 -6.21245 -3.92153 0.91459 2.57338 2.77111 2.86637 3.08397 3.23635 3.25023 3.29086 3.35933 3.58225 4.11841 4.20206 4.27800 4.30510 4.34666 4.50334 4.64035 4.69427 4.73237 4.76567 4.90435 5.01731 5.03045 5.13792 5.16320 5.28102 5.33248 5.35549 5.43805 5.45270 5.48620 5.59437 5.62394 5.66090 5.71039 5.73585 5.83153 5.90824 6.04983 6.10595 6.12789 6.15824 6.25393 7.11484 7.59234 7.64917 7.86579 8.35142 8.55088 9.23762 10.86124 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031387 B = 0.001629 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.869948 B =17183.543763 C =17636.114813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.020 4.020 4 C -0.127 4.127 5 C -0.238 4.238 6 C 0.551 3.449 7 O -0.535 6.535 8 N -0.699 5.699 9 C 0.120 3.880 10 H 0.140 0.860 11 C -0.182 4.182 12 H 0.123 0.877 13 C 0.133 3.867 14 N -0.634 5.634 15 C 0.555 3.445 16 O -0.516 6.516 17 C -0.147 4.147 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.138 3.862 28 C -0.179 4.179 29 H 0.122 0.878 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.403 0.597 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 45 H 0.073 0.927 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.411 -28.333 -13.823 34.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 C -0.022 4.022 4 C -0.183 4.183 5 C -0.259 4.259 6 C 0.342 3.658 7 O -0.414 6.414 8 N -0.348 5.348 9 C 0.013 3.987 10 H 0.157 0.843 11 C -0.203 4.203 12 H 0.141 0.859 13 C 0.011 3.989 14 N -0.372 5.372 15 C 0.344 3.656 16 O -0.390 6.390 17 C -0.297 4.297 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 C 0.014 3.986 28 C -0.200 4.200 29 H 0.140 0.860 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.144 0.856 39 H 0.237 0.763 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.270 -26.249 -14.346 33.143 hybrid contribution 1.810 -1.578 1.187 2.678 sum -12.460 -27.826 -13.160 33.208 Atomic orbital electron populations 1.21729 0.94050 1.02224 1.02538 1.20801 0.96804 0.92506 1.03526 1.22606 0.89371 0.94742 0.95479 1.21179 1.02493 1.01320 0.93309 1.22289 1.08240 0.96276 0.99076 1.18556 0.78682 0.85339 0.83210 1.90782 1.51331 1.68922 1.30363 1.45214 1.61794 1.18378 1.09412 1.21680 0.97720 0.82785 0.96544 0.84283 1.24113 0.94638 1.01306 1.00225 0.85916 1.22426 0.92754 0.80986 1.02761 1.50143 1.18145 1.15493 1.53446 1.19997 0.88297 0.80160 0.77124 1.90717 1.52954 1.35213 1.60096 1.23507 0.95713 1.07827 1.02654 1.85411 1.23417 1.10351 1.64163 1.22821 1.02812 1.04460 1.38363 0.90971 1.24986 0.98480 0.94441 0.95598 1.70010 1.37581 1.04570 1.38091 0.86225 0.82431 0.77720 0.79126 1.19925 1.20793 1.19951 1.21566 0.87997 0.92725 0.96274 1.24265 0.97508 0.93123 1.05074 0.85998 0.92235 0.91992 0.92330 0.90164 0.90581 0.90112 0.92546 0.89124 0.85577 0.76266 0.88960 0.89941 0.89298 0.89241 0.92119 0.90937 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.89 37.16 0.37 -0.16 16 2 C -0.10 -0.39 6.08 -27.88 -0.17 -0.56 16 3 C -0.02 -0.13 5.36 -101.17 -0.54 -0.67 16 4 C -0.13 -0.92 8.48 36.00 0.31 -0.61 16 5 C -0.24 -1.53 9.60 -37.80 -0.36 -1.90 16 6 C 0.55 4.91 7.61 -12.67 -0.10 4.81 16 7 O -0.54 -6.47 12.85 5.26 0.07 -6.40 16 8 N -0.70 -5.02 5.56 -54.99 -0.31 -5.33 16 9 C 0.12 1.02 5.97 -67.93 -0.41 0.61 16 10 H 0.14 1.38 7.40 -51.93 -0.38 0.99 16 11 C -0.18 -1.55 6.96 -89.22 -0.62 -2.17 16 12 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 13 C 0.13 1.40 6.96 -0.30 0.00 1.40 16 14 N -0.63 -9.23 3.39 -166.15 -0.56 -9.79 16 15 C 0.56 10.87 7.94 -10.98 -0.09 10.78 16 16 O -0.52 -12.16 16.13 5.56 0.09 -12.07 16 17 C -0.15 -3.02 5.17 36.01 0.19 -2.84 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 23 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 C 0.14 1.66 6.86 -2.41 -0.02 1.65 16 28 C -0.18 -1.64 7.06 -89.22 -0.63 -2.27 16 29 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.25 8.03 -51.93 -0.42 -0.17 16 35 H 0.08 0.64 8.04 -51.93 -0.42 0.23 16 36 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 37 H 0.09 0.84 6.14 -51.93 -0.32 0.53 16 38 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 39 H 0.40 1.87 8.81 -40.82 -0.36 1.51 16 40 H 0.09 0.94 7.41 -51.93 -0.38 0.55 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.09 1.69 7.99 -51.92 -0.41 1.28 16 43 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.09 1.20 7.89 -51.93 -0.41 0.79 16 LS Contribution 398.78 15.07 6.01 6.01 Total: -1.00 -36.10 398.78 -10.38 -46.48 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.30 Total: -0.99 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -1.88 Total: -4.93 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: -0.13 Total: -40.61 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.16 Total: -18.47 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.10 -10.38 -46.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737526708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.801 kcal (2) G-P(sol) polarization free energy of solvation -36.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds