Wall clock time and date at job start Tue Mar 31 2020 21:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47194 * 2 1 4 4 N 1.46895 * 109.46996 * 179.97438 * 3 2 1 5 5 C 1.48565 * 111.00157 * 290.12981 * 4 3 2 6 6 C 1.54383 * 104.59522 * 200.96105 * 5 4 3 7 7 C 1.54269 * 105.05680 * 23.84977 * 6 5 4 8 8 H 1.09004 * 110.32158 * 240.99702 * 7 6 5 9 9 N 1.46498 * 110.31866 * 118.90189 * 7 6 5 10 10 S 1.65600 * 120.00277 * 96.45412 * 9 7 6 11 11 O 1.42100 * 106.40166 * 311.45483 * 10 9 7 12 12 O 1.42106 * 106.40164 * 178.53819 * 10 9 7 13 13 C 1.76197 * 107.22076 * 64.99483 * 10 9 7 14 14 C 1.38655 * 119.87668 * 269.73235 * 13 10 9 15 15 C 1.38614 * 120.49967 * 179.72596 * 14 13 10 16 16 C 1.37633 * 120.25159 * 0.54078 * 15 14 13 17 17 C 1.40708 * 119.74091 * 359.73289 * 16 15 14 18 18 C 1.41393 * 120.24087 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99665 * 204.37151 * 18 17 16 20 20 C 1.39949 * 120.00286 * 24.36518 * 18 17 16 21 21 N 1.30825 * 119.99890 * 17.86797 * 20 18 17 22 22 Si 1.86796 * 120.00044 * 197.86246 * 20 18 17 23 23 H 1.48508 * 109.46996 * 90.00162 * 22 20 18 24 24 H 1.48500 * 109.47309 * 210.00004 * 22 20 18 25 25 H 1.48502 * 109.47493 * 330.00302 * 22 20 18 26 26 C 1.37601 * 119.87533 * 90.00001 * 13 10 9 27 27 C 1.48564 * 111.00007 * 174.70828 * 4 3 2 28 28 H 1.08998 * 109.47312 * 59.99698 * 1 2 3 29 29 H 1.09004 * 109.46964 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46747 * 299.99591 * 1 2 3 31 31 H 1.09007 * 109.46898 * 239.99918 * 2 1 3 32 32 H 1.09001 * 109.46820 * 120.00231 * 2 1 3 33 33 H 1.09003 * 109.46940 * 60.00527 * 3 2 1 34 34 H 1.08998 * 109.47238 * 300.00348 * 3 2 1 35 35 H 1.08997 * 110.41495 * 82.18173 * 5 4 3 36 36 H 1.09003 * 110.40953 * 319.73757 * 5 4 3 37 37 H 1.09000 * 110.32338 * 264.95659 * 6 5 4 38 38 H 1.09000 * 110.32533 * 142.74528 * 6 5 4 39 39 H 0.97003 * 119.99640 * 276.44913 * 9 7 6 40 40 H 1.08001 * 119.74786 * 359.97438 * 14 13 10 41 41 H 1.08003 * 119.87347 * 180.25488 * 15 14 13 42 42 H 1.08001 * 120.12892 * 179.70946 * 16 15 14 43 43 H 0.97002 * 119.99845 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.12495 * 0.02562 * 26 13 10 45 45 H 1.09000 * 110.40946 * 40.26611 * 27 4 3 46 46 H 1.08999 * 110.40979 * 277.82193 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0409 0.9653 1.3031 6 6 5.4828 1.5141 1.3591 7 6 5.4831 2.7365 0.4181 8 1 6.1899 2.5858 -0.3980 9 7 5.8195 3.9521 1.1633 10 16 7.3776 4.5129 1.1731 11 8 8.2036 3.3975 1.4778 12 8 7.3693 5.7073 1.9431 13 6 7.7715 4.9876 -0.4774 14 6 8.3324 4.0642 -1.3464 15 6 8.6422 4.4221 -2.6492 16 6 8.4058 5.7040 -3.0910 17 6 7.8422 6.6510 -2.2162 18 6 7.5944 7.9707 -2.6591 19 1 7.5452 8.7796 -1.9451 20 6 7.4129 8.2288 -4.0225 21 7 7.1237 7.2499 -4.8407 22 14 7.5833 9.9712 -4.6740 23 1 8.9937 10.2160 -5.0695 24 1 6.7005 10.1466 -5.8552 25 1 7.1915 10.9362 -3.6155 26 6 7.5265 6.2749 -0.8974 27 6 4.0415 2.8234 -0.1273 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 4.0474 -0.1242 1.3351 36 1 3.4490 1.3670 2.1256 37 1 6.1880 0.7627 1.0039 38 1 5.7328 1.8187 2.3754 39 1 5.1294 4.4286 1.6509 40 1 8.5256 3.0574 -1.0069 41 1 9.0749 3.6936 -3.3189 42 1 8.6522 5.9820 -4.1051 43 1 6.9975 7.4288 -5.7857 44 1 7.0940 6.9938 -0.2173 45 1 3.4498 3.5159 0.4713 46 1 4.0484 3.1329 -1.1724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595353621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:15 Heat of formation + Delta-G solvation = -62.855569 kcal Electronic energy + Delta-G solvation = -27347.521564 eV Core-core repulsion = 23556.064938 eV Total energy + Delta-G solvation = -3791.456626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 6.46 seconds Orbital eigenvalues (eV) -39.34544 -37.65283 -36.66807 -35.52000 -35.30062 -33.86380 -33.14291 -30.13454 -30.09053 -29.80260 -28.09990 -25.52161 -25.32176 -22.19460 -21.92468 -21.23450 -20.94165 -20.47954 -19.13616 -17.95676 -17.13467 -16.49718 -16.05746 -15.86476 -15.40658 -15.20668 -14.85848 -14.72860 -14.14474 -14.10239 -13.57524 -13.48616 -13.34082 -13.11503 -12.59746 -12.54220 -12.25779 -12.13527 -11.95993 -11.90256 -11.61961 -11.54857 -11.45710 -11.41129 -11.39025 -11.16024 -11.04279 -11.00873 -10.90396 -10.83119 -10.69407 -10.61302 -9.81476 -9.68152 -9.37006 -9.19022 -8.64229 -8.05323 -7.72041 -6.94347 -4.55071 1.01099 2.17974 2.61890 2.98991 3.03048 3.05703 3.45530 3.81668 3.92187 4.20807 4.40216 4.51160 4.57362 4.79326 4.90119 4.95126 5.06196 5.14235 5.18465 5.27256 5.37806 5.39105 5.44524 5.50587 5.53471 5.66653 5.78060 5.80997 5.89623 5.93996 6.03965 6.04428 6.12988 6.16329 6.24638 6.64420 6.70640 6.75121 6.83048 6.87876 7.01713 7.17238 7.21938 7.36946 7.71706 7.79707 7.93103 8.39030 8.65492 8.70414 10.01028 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.003241 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.637676 B = 8638.454133 C =10082.040869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.044 3.956 4 N -0.510 5.510 5 C 0.032 3.968 6 C -0.139 4.139 7 C 0.153 3.847 8 H 0.103 0.897 9 N -1.115 6.115 10 S 2.687 3.313 11 O -0.972 6.972 12 O -0.974 6.974 13 C -0.632 4.632 14 C -0.150 4.150 15 C -0.119 4.119 16 C -0.118 4.118 17 C 0.092 3.908 18 C -0.460 4.460 19 H 0.083 0.917 20 C 0.075 3.925 21 N -0.793 5.793 22 Si 0.912 3.088 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.124 4.124 27 C 0.029 3.971 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.412 0.588 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.283 0.717 44 H 0.111 0.889 45 H 0.052 0.948 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.697 -10.452 6.256 15.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.085 4.085 4 N -0.234 5.234 5 C -0.096 4.096 6 C -0.179 4.179 7 C 0.045 3.955 8 H 0.121 0.879 9 N -0.871 5.871 10 S 2.783 3.217 11 O -0.962 6.962 12 O -0.964 6.964 13 C -0.724 4.724 14 C -0.171 4.171 15 C -0.139 4.139 16 C -0.138 4.138 17 C 0.088 3.912 18 C -0.490 4.490 19 H 0.101 0.899 20 C -0.143 4.143 21 N -0.418 5.418 22 Si 0.736 3.264 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.184 1.184 26 C -0.145 4.145 27 C -0.100 4.100 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.245 0.755 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.143 0.857 43 H 0.094 0.906 44 H 0.129 0.871 45 H 0.071 0.929 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.932 -10.896 6.229 15.405 hybrid contribution -0.760 1.631 -0.393 1.842 sum -9.691 -9.265 5.836 14.623 Atomic orbital electron populations 1.21747 0.95734 1.01690 1.01776 1.21482 0.95246 0.96280 1.02703 1.22332 0.87673 0.97421 1.01055 1.65390 1.07897 1.19087 1.31028 1.23161 0.95232 1.00837 0.90360 1.22865 0.96494 0.97833 1.00736 1.21392 0.97343 0.83232 0.93525 0.87867 1.55775 1.29472 1.36941 1.64944 1.01731 0.72118 0.72890 0.74935 1.93522 1.65560 1.53125 1.83957 1.93539 1.85850 1.47386 1.69660 1.29720 1.17339 1.03349 1.21954 1.20093 1.05690 0.97220 0.94116 1.20811 1.01375 0.96709 0.94985 1.21645 0.98702 0.92748 1.00712 1.17686 0.89314 0.93562 0.90631 1.19630 1.42879 0.93926 0.92524 0.89911 1.25934 0.91927 0.99541 0.96901 1.69780 1.32474 1.33980 1.05590 0.86243 0.79259 0.82005 0.78896 1.19135 1.20210 1.18440 1.20767 1.03079 0.92954 0.97725 1.23398 0.94133 0.89870 1.02620 0.92601 0.92592 0.92958 0.91032 0.92123 0.94700 0.90572 0.90023 0.93887 0.89863 0.90258 0.75472 0.87549 0.88352 0.85745 0.90569 0.87105 0.92933 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -0.98 5.99 -26.73 -0.16 -1.14 16 3 C 0.04 0.41 4.81 -3.83 -0.02 0.39 16 4 N -0.51 -5.67 5.37 -229.97 -1.24 -6.90 16 5 C 0.03 0.33 5.74 -2.18 -0.01 0.31 16 6 C -0.14 -1.64 6.79 -25.34 -0.17 -1.81 16 7 C 0.15 2.04 3.59 -66.55 -0.24 1.80 16 8 H 0.10 1.50 7.35 -51.93 -0.38 1.12 16 9 N -1.11 -15.75 5.45 -3.71 -0.02 -15.78 16 10 S 2.69 49.39 5.67 -107.50 -0.61 48.78 16 11 O -0.97 -19.26 17.02 -57.17 -0.97 -20.23 16 12 O -0.97 -20.23 17.27 -57.17 -0.99 -21.22 16 13 C -0.63 -13.54 5.84 -39.66 -0.23 -13.78 16 14 C -0.15 -3.19 8.96 -39.29 -0.35 -3.54 16 15 C -0.12 -2.64 10.02 -39.66 -0.40 -3.04 16 16 C -0.12 -2.91 8.70 -38.87 -0.34 -3.25 16 17 C 0.09 2.34 5.58 -106.82 -0.60 1.75 16 18 C -0.46 -11.71 9.05 -37.74 -0.34 -12.05 16 19 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 20 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 21 N -0.79 -19.36 10.95 55.55 0.61 -18.76 16 22 Si 0.91 17.93 29.59 -169.99 -5.03 12.90 16 23 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 24 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 26 C -0.12 -2.94 9.26 -38.87 -0.36 -3.30 16 27 C 0.03 0.35 6.20 -2.18 -0.01 0.34 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.49 7.25 -51.93 -0.38 0.11 16 33 H 0.03 0.32 7.88 -51.93 -0.41 -0.09 16 34 H 0.08 0.73 8.13 -51.93 -0.42 0.30 16 35 H 0.08 0.75 7.76 -51.93 -0.40 0.35 16 36 H 0.04 0.41 7.82 -51.93 -0.41 0.00 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.92 7.95 -51.93 -0.41 0.51 16 39 H 0.41 4.86 8.61 -34.47 -0.30 4.56 16 40 H 0.11 2.04 7.59 -52.49 -0.40 1.64 16 41 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 42 H 0.12 3.12 6.16 -52.49 -0.32 2.80 16 43 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 44 H 0.11 2.53 7.60 -52.49 -0.40 2.13 16 45 H 0.05 0.58 7.67 -51.93 -0.40 0.18 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 383.11 15.07 5.77 5.77 Total: -1.00 -29.55 383.11 -12.56 -42.12 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -7.14 Total: 9.59 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: -2.95 Total: -36.28 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: -0.65 Total: -41.43 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -1.96 Total: -41.45 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Atomic # 16 Polarization: 49.39 SS G_CDS: -0.61 Total: 48.78 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.55 -12.56 -42.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595353621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.738 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.46 seconds