Wall clock time and date at job start Tue Mar 31 2020 20:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50705 * 119.99885 * 2 1 4 4 C 1.32991 * 120.00297 * 179.97438 * 2 1 3 5 5 C 1.47104 * 119.99763 * 5.64089 * 4 2 1 6 6 O 1.21618 * 119.99839 * 354.63019 * 5 4 2 7 7 N 1.34774 * 120.00038 * 174.62705 * 5 4 2 8 8 C 1.48144 * 127.83817 * 179.97438 * 7 5 4 9 9 C 1.54390 * 104.61877 * 140.41705 * 8 7 5 10 10 H 1.09001 * 117.61553 * 242.77164 * 9 8 7 11 11 C 1.52999 * 118.12035 * 87.19124 * 9 8 7 12 12 H 1.09002 * 117.44397 * 16.06764 * 11 9 8 13 13 C 1.53009 * 117.44204 * 160.81270 * 11 9 8 14 14 N 1.46496 * 109.47023 * 185.00092 * 13 11 9 15 15 C 1.34776 * 119.99933 * 179.97438 * 14 13 11 16 16 O 1.21289 * 119.99828 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00140 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.47213 * 180.02562 * 17 15 14 19 19 C 1.76196 * 100.00191 * 180.02562 * 18 17 15 20 20 H 1.08008 * 119.99746 * 359.72201 * 19 18 17 21 21 C 1.38792 * 120.00322 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00490 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00128 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46878 * 90.00167 * 23 21 19 25 25 H 1.48492 * 109.47503 * 210.00618 * 23 21 19 26 26 H 1.48504 * 109.46982 * 330.00761 * 23 21 19 27 27 C 1.52999 * 60.55601 * 268.46198 * 11 9 8 28 28 H 1.09003 * 119.54077 * 248.22971 * 27 11 9 29 29 C 1.48143 * 127.83947 * 0.02562 * 7 5 4 30 30 H 1.09000 * 109.47550 * 238.06763 * 1 2 3 31 31 H 1.09007 * 109.47219 * 358.07189 * 1 2 3 32 32 H 1.09004 * 109.47215 * 118.06824 * 1 2 3 33 33 H 1.08998 * 109.47083 * 269.99626 * 3 2 1 34 34 H 1.08996 * 109.47084 * 29.99832 * 3 2 1 35 35 H 1.09003 * 109.46779 * 149.99825 * 3 2 1 36 36 H 1.08004 * 120.00597 * 185.63782 * 4 2 1 37 37 H 1.09001 * 110.40698 * 21.63633 * 8 7 5 38 38 H 1.09000 * 110.41358 * 259.20224 * 8 7 5 39 39 H 1.08996 * 109.47220 * 64.99988 * 13 11 9 40 40 H 1.09006 * 109.46613 * 305.00260 * 13 11 9 41 41 H 0.96997 * 120.00043 * 0.02562 * 14 13 11 42 42 H 1.09003 * 109.46721 * 60.00596 * 17 15 14 43 43 H 1.08997 * 109.47231 * 300.00806 * 17 15 14 44 44 H 0.96994 * 120.00165 * 179.97438 * 22 21 19 45 45 H 1.08996 * 110.40526 * 338.36749 * 29 7 5 46 46 H 1.09001 * 110.40754 * 100.68242 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4418 -2.4226 -0.1241 6 8 0.2256 -2.4272 -0.1293 7 7 2.1205 -3.5819 -0.2326 8 6 1.5675 -4.9498 -0.3654 9 6 2.4934 -5.6472 -1.3851 10 1 2.0514 -5.9786 -2.3248 11 6 3.7548 -6.3360 -0.8605 12 1 3.8092 -6.5374 0.2094 13 6 4.4144 -7.3814 -1.7623 14 7 5.5273 -8.0108 -1.0472 15 6 6.2591 -8.9692 -1.6492 16 8 5.9965 -9.3103 -2.7831 17 6 7.4044 -9.6163 -0.9139 18 16 8.1845 -10.8530 -1.9806 19 6 9.4501 -11.4337 -0.9011 20 1 9.5500 -11.0138 0.0891 21 6 10.3228 -12.4261 -1.3252 22 7 11.2687 -12.8596 -0.5189 23 14 10.1550 -13.1468 -3.0404 24 1 10.9815 -12.3601 -3.9908 25 1 10.6181 -14.5576 -3.0321 26 1 8.7320 -13.0954 -3.4619 27 6 3.8263 -4.8742 -1.3064 28 1 4.3923 -4.6121 -2.2003 29 6 3.5890 -3.7775 -0.2452 30 1 -0.3634 -0.5435 0.8721 31 1 -0.3634 1.0271 0.0346 32 1 -0.3634 -0.4836 -0.9068 33 1 2.4422 1.6198 -1.0276 34 1 1.6714 2.0648 0.5138 35 1 3.2129 1.1748 0.5139 36 1 3.2481 -1.1540 0.0924 37 1 0.5459 -4.9117 -0.7437 38 1 1.5996 -5.4676 0.5933 39 1 4.7891 -6.8984 -2.6647 40 1 3.6813 -8.1409 -2.0343 41 1 5.7371 -7.7383 -0.1403 42 1 7.0300 -10.0989 -0.0110 43 1 8.1374 -8.8566 -0.6425 44 1 11.8783 -13.5534 -0.8152 45 1 4.0928 -2.8548 -0.5327 46 1 3.9364 -4.1106 0.7328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571994113.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:56 Heat of formation + Delta-G solvation = -23.551870 kcal Electronic energy + Delta-G solvation = -25188.811547 eV Core-core repulsion = 21399.059258 eV Total energy + Delta-G solvation = -3789.752289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.97478 -39.49506 -38.89034 -35.90705 -35.19761 -33.53874 -32.45245 -30.14655 -29.45130 -28.46847 -28.22737 -27.05242 -25.63154 -24.57297 -21.42620 -21.07386 -20.70586 -20.19518 -18.50114 -17.97136 -17.68882 -16.52862 -16.32257 -15.89690 -15.71113 -15.37387 -15.01812 -14.86340 -14.70198 -14.37079 -14.08417 -13.96294 -13.84413 -13.50102 -13.25027 -13.15559 -12.91758 -12.80955 -12.69661 -12.61145 -12.17657 -12.10532 -11.95387 -11.86315 -11.81487 -11.28193 -11.02113 -10.67738 -10.57610 -10.47428 -9.93967 -9.86303 -9.65230 -9.55474 -9.09137 -9.04368 -8.98968 -8.51900 -6.93616 -6.30320 -4.02324 0.92186 2.50632 2.70365 2.87046 2.91430 2.97381 3.29037 3.32832 3.49460 3.61034 3.94290 4.08220 4.15903 4.31818 4.35380 4.38079 4.54098 4.63652 4.71302 4.72596 4.83568 4.90097 4.96161 4.99294 5.08815 5.11273 5.16686 5.20522 5.31148 5.32846 5.35007 5.44493 5.50709 5.54533 5.57121 5.64955 5.74702 5.78354 5.82339 5.98999 6.04191 6.08456 6.46564 7.13840 7.55534 7.80500 7.92650 8.39987 8.44414 9.15889 10.78868 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033565 B = 0.001527 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.005733 B =18330.039471 C =18709.654223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.028 4.028 3 C -0.128 4.128 4 C -0.237 4.237 5 C 0.568 3.432 6 O -0.542 6.542 7 N -0.622 5.622 8 C 0.132 3.868 9 C -0.164 4.164 10 H 0.127 0.873 11 C -0.120 4.120 12 H 0.113 0.887 13 C 0.153 3.847 14 N -0.735 5.735 15 C 0.531 3.469 16 O -0.520 6.520 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C -0.169 4.169 28 H 0.126 0.874 29 C 0.128 3.872 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.126 0.874 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.401 0.599 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.087 0.913 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.506 26.803 3.171 33.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.030 4.030 3 C -0.185 4.185 4 C -0.258 4.258 5 C 0.362 3.638 6 O -0.422 6.422 7 N -0.356 5.356 8 C 0.010 3.990 9 C -0.184 4.184 10 H 0.144 0.856 11 C -0.139 4.139 12 H 0.131 0.869 13 C 0.029 3.971 14 N -0.390 5.390 15 C 0.317 3.683 16 O -0.394 6.394 17 C -0.275 4.275 18 S 0.084 5.916 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.188 4.188 28 H 0.144 0.856 29 C 0.006 3.994 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.144 0.856 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.235 0.765 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.514 26.230 1.317 33.325 hybrid contribution 0.858 0.004 1.107 1.400 sum -19.656 26.234 2.424 32.870 Atomic orbital electron populations 1.21072 0.90727 1.01272 1.04389 1.22625 0.96983 0.94504 0.88914 1.21045 1.00140 0.94183 1.03094 1.22304 1.00172 0.91551 1.11771 1.18187 0.86689 0.82841 0.76119 1.90793 1.13510 1.86633 1.51220 1.49151 1.07358 1.06093 1.73019 1.21736 0.97960 0.81149 0.98135 1.23697 0.89374 1.03349 1.01991 0.85561 1.22639 0.98802 0.91948 1.00525 0.86875 1.20741 0.88582 0.93893 0.93906 1.45914 1.33502 1.40838 1.18698 1.20287 0.82709 0.78617 0.86709 1.90709 1.68876 1.61684 1.18155 1.23275 0.98171 1.02687 1.03326 1.84799 1.39087 1.44656 1.23029 1.22316 1.15831 1.25938 1.02879 0.89379 1.24708 0.93733 0.95044 0.97772 1.69937 1.17064 1.28546 1.36128 0.86737 0.81604 0.79179 0.84343 1.19211 1.19924 1.15928 1.23893 1.01639 0.91412 1.01854 0.85598 1.21876 0.80784 0.98434 0.98344 0.89916 0.92767 0.89862 0.90059 0.90869 0.91010 0.85619 0.89234 0.90650 0.91136 0.90694 0.76525 0.88407 0.88454 0.91932 0.89495 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 8.33 36.00 0.30 -0.56 16 2 C -0.03 -0.18 6.11 -101.17 -0.62 -0.80 16 3 C -0.13 -0.48 9.99 36.01 0.36 -0.12 16 4 C -0.24 -1.71 9.12 -37.81 -0.34 -2.06 16 5 C 0.57 5.54 7.82 -12.66 -0.10 5.44 16 6 O -0.54 -6.81 13.37 5.26 0.07 -6.74 16 7 N -0.62 -5.03 3.32 -170.67 -0.57 -5.59 16 8 C 0.13 0.99 6.85 -2.41 -0.02 0.98 16 9 C -0.16 -1.10 6.85 -89.22 -0.61 -1.71 16 10 H 0.13 0.84 8.14 -51.93 -0.42 0.41 16 11 C -0.12 -0.79 5.39 -90.62 -0.49 -1.28 16 12 H 0.11 0.65 8.04 -51.93 -0.42 0.23 16 13 C 0.15 1.48 5.95 -4.04 -0.02 1.45 16 14 N -0.73 -8.39 5.56 -60.29 -0.33 -8.73 16 15 C 0.53 8.96 7.85 -10.99 -0.09 8.87 16 16 O -0.52 -10.88 15.86 5.55 0.09 -10.79 16 17 C -0.12 -2.31 6.16 36.01 0.22 -2.09 16 18 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 19 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 20 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.34 13.97 55.49 0.78 -25.56 16 23 Si 0.86 21.60 27.74 -169.99 -4.71 16.88 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 27 C -0.17 -1.05 6.75 -89.19 -0.60 -1.65 16 28 H 0.13 0.78 8.12 -51.93 -0.42 0.36 16 29 C 0.13 0.73 6.66 -2.38 -0.02 0.72 16 30 H 0.08 0.72 7.30 -51.93 -0.38 0.34 16 31 H 0.05 0.29 7.93 -51.93 -0.41 -0.13 16 32 H 0.08 0.74 7.16 -51.93 -0.37 0.37 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.22 8.03 -51.93 -0.42 -0.20 16 35 H 0.07 0.22 8.06 -51.93 -0.42 -0.20 16 36 H 0.13 0.65 6.79 -52.48 -0.36 0.29 16 37 H 0.09 0.76 7.88 -51.93 -0.41 0.35 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.74 7.94 -51.93 -0.41 0.33 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.40 3.39 8.40 -40.82 -0.34 3.04 16 42 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 43 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.09 0.39 6.75 -51.93 -0.35 0.04 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 394.42 15.07 5.94 5.94 Total: -1.00 -35.70 394.42 -9.79 -45.49 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -7.24 Total: -0.68 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -1.81 Total: -4.68 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: -0.13 Total: -39.89 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.16 Total: -17.53 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.70 -9.79 -45.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571994113.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.937 kcal (2) G-P(sol) polarization free energy of solvation -35.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds