Wall clock time and date at job start Tue Mar 31 2020 20:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50705 * 119.99885 * 2 1 4 4 C 1.32991 * 120.00297 * 179.97438 * 2 1 3 5 5 C 1.47104 * 119.99763 * 5.64089 * 4 2 1 6 6 O 1.21618 * 119.99839 * 354.63019 * 5 4 2 7 7 N 1.34774 * 120.00038 * 174.62705 * 5 4 2 8 8 C 1.48144 * 127.83817 * 179.97438 * 7 5 4 9 9 C 1.54390 * 104.61877 * 140.41705 * 8 7 5 10 10 H 1.09001 * 117.61553 * 242.77164 * 9 8 7 11 11 C 1.52999 * 118.12035 * 87.19124 * 9 8 7 12 12 H 1.09002 * 117.44397 * 16.06764 * 11 9 8 13 13 C 1.53009 * 117.44204 * 160.81270 * 11 9 8 14 14 N 1.46496 * 109.47023 * 185.00092 * 13 11 9 15 15 C 1.34776 * 119.99933 * 179.97438 * 14 13 11 16 16 O 1.21289 * 119.99828 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00140 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.47213 * 180.02562 * 17 15 14 19 19 C 1.76196 * 100.00191 * 180.02562 * 18 17 15 20 20 H 1.08008 * 119.99746 * 359.72201 * 19 18 17 21 21 C 1.38792 * 120.00322 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00490 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00128 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46878 * 90.00167 * 23 21 19 25 25 H 1.48492 * 109.47503 * 210.00618 * 23 21 19 26 26 H 1.48504 * 109.46982 * 330.00761 * 23 21 19 27 27 C 1.52999 * 60.55601 * 268.46198 * 11 9 8 28 28 H 1.09003 * 119.54077 * 248.22971 * 27 11 9 29 29 C 1.48143 * 127.83947 * 0.02562 * 7 5 4 30 30 H 1.09000 * 109.47550 * 238.06763 * 1 2 3 31 31 H 1.09007 * 109.47219 * 358.07189 * 1 2 3 32 32 H 1.09004 * 109.47215 * 118.06824 * 1 2 3 33 33 H 1.08998 * 109.47083 * 269.99626 * 3 2 1 34 34 H 1.08996 * 109.47084 * 29.99832 * 3 2 1 35 35 H 1.09003 * 109.46779 * 149.99825 * 3 2 1 36 36 H 1.08004 * 120.00597 * 185.63782 * 4 2 1 37 37 H 1.09001 * 110.40698 * 21.63633 * 8 7 5 38 38 H 1.09000 * 110.41358 * 259.20224 * 8 7 5 39 39 H 1.08996 * 109.47220 * 64.99988 * 13 11 9 40 40 H 1.09006 * 109.46613 * 305.00260 * 13 11 9 41 41 H 0.96997 * 120.00043 * 0.02562 * 14 13 11 42 42 H 1.09003 * 109.46721 * 60.00596 * 17 15 14 43 43 H 1.08997 * 109.47231 * 300.00806 * 17 15 14 44 44 H 0.96994 * 120.00165 * 179.97438 * 22 21 19 45 45 H 1.08996 * 110.40526 * 338.36749 * 29 7 5 46 46 H 1.09001 * 110.40754 * 100.68242 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4418 -2.4226 -0.1241 6 8 0.2256 -2.4272 -0.1293 7 7 2.1205 -3.5819 -0.2326 8 6 1.5675 -4.9498 -0.3654 9 6 2.4934 -5.6472 -1.3851 10 1 2.0514 -5.9786 -2.3248 11 6 3.7548 -6.3360 -0.8605 12 1 3.8092 -6.5374 0.2094 13 6 4.4144 -7.3814 -1.7623 14 7 5.5273 -8.0108 -1.0472 15 6 6.2591 -8.9692 -1.6492 16 8 5.9965 -9.3103 -2.7831 17 6 7.4044 -9.6163 -0.9139 18 16 8.1845 -10.8530 -1.9806 19 6 9.4501 -11.4337 -0.9011 20 1 9.5500 -11.0138 0.0891 21 6 10.3228 -12.4261 -1.3252 22 7 11.2687 -12.8596 -0.5189 23 14 10.1550 -13.1468 -3.0404 24 1 10.9815 -12.3601 -3.9908 25 1 10.6181 -14.5576 -3.0321 26 1 8.7320 -13.0954 -3.4619 27 6 3.8263 -4.8742 -1.3064 28 1 4.3923 -4.6121 -2.2003 29 6 3.5890 -3.7775 -0.2452 30 1 -0.3634 -0.5435 0.8721 31 1 -0.3634 1.0271 0.0346 32 1 -0.3634 -0.4836 -0.9068 33 1 2.4422 1.6198 -1.0276 34 1 1.6714 2.0648 0.5138 35 1 3.2129 1.1748 0.5139 36 1 3.2481 -1.1540 0.0924 37 1 0.5459 -4.9117 -0.7437 38 1 1.5996 -5.4676 0.5933 39 1 4.7891 -6.8984 -2.6647 40 1 3.6813 -8.1409 -2.0343 41 1 5.7371 -7.7383 -0.1403 42 1 7.0300 -10.0989 -0.0110 43 1 8.1374 -8.8566 -0.6425 44 1 11.8783 -13.5534 -0.8152 45 1 4.0928 -2.8548 -0.5327 46 1 3.9364 -4.1106 0.7328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571994113.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:55 Heat of formation + Delta-G solvation = -47.074217 kcal Electronic energy + Delta-G solvation = -25189.831553 eV Core-core repulsion = 21399.059258 eV Total energy + Delta-G solvation = -3790.772295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.59438 -40.60333 -39.72855 -36.48809 -36.07490 -34.66058 -34.42541 -31.39619 -30.07812 -29.08178 -28.66626 -27.98307 -27.67266 -25.30077 -22.13850 -21.73805 -21.53917 -21.00193 -19.85015 -19.04026 -18.36700 -17.85139 -17.40789 -17.05043 -16.74136 -16.51577 -16.28628 -15.76153 -15.55058 -15.25212 -15.04879 -14.89515 -14.74943 -14.54725 -14.50395 -14.16378 -13.63400 -13.59769 -13.34586 -13.33011 -13.20912 -13.16165 -12.99571 -12.71125 -12.63096 -12.49160 -12.43284 -12.37027 -11.85840 -11.26039 -11.15883 -11.12334 -10.89230 -10.57910 -10.51110 -10.21498 -10.08284 -9.66220 -8.97688 -8.50182 -6.20733 0.37172 1.00990 1.32512 1.48104 1.56958 1.58947 1.92974 2.17161 2.24408 2.26561 2.48720 2.74208 2.88311 3.33975 3.50056 3.65992 3.80461 3.90191 3.94895 4.03462 4.16971 4.18783 4.24613 4.26990 4.43531 4.50956 4.54250 4.55792 4.67628 4.69422 4.71343 4.74761 4.81854 4.89117 4.94483 4.97013 5.11676 5.14021 5.18432 5.22576 5.44643 5.51490 5.62673 5.72097 6.12971 6.49794 6.52918 6.95354 7.13502 7.22155 8.62080 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033565 B = 0.001527 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.005733 B =18330.039471 C =18709.654223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.027 4.027 3 C -0.125 4.125 4 C -0.248 4.248 5 C 0.556 3.444 6 O -0.584 6.584 7 N -0.625 5.625 8 C 0.130 3.870 9 C -0.166 4.166 10 H 0.124 0.876 11 C -0.108 4.108 12 H 0.131 0.869 13 C 0.154 3.846 14 N -0.707 5.707 15 C 0.535 3.465 16 O -0.565 6.565 17 C -0.111 4.111 18 S -0.179 6.179 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.047 3.953 22 N -0.917 5.917 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.260 1.260 26 H -0.237 1.237 27 C -0.161 4.161 28 H 0.129 0.871 29 C 0.127 3.873 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.151 0.849 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.419 0.581 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.276 0.724 45 H 0.103 0.897 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.397 28.600 3.389 34.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.029 4.029 3 C -0.181 4.181 4 C -0.268 4.268 5 C 0.350 3.650 6 O -0.467 6.467 7 N -0.357 5.357 8 C 0.008 3.992 9 C -0.186 4.186 10 H 0.142 0.858 11 C -0.127 4.127 12 H 0.149 0.851 13 C 0.030 3.970 14 N -0.362 5.362 15 C 0.321 3.679 16 O -0.444 6.444 17 C -0.262 4.262 18 S 0.048 5.952 19 C -0.676 4.676 20 H 0.082 0.918 21 C -0.159 4.159 22 N -0.555 5.555 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.161 1.161 27 C -0.180 4.180 28 H 0.147 0.853 29 C 0.006 3.994 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.168 0.832 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.257 0.743 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.086 0.914 45 H 0.122 0.878 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.393 28.051 1.582 34.717 hybrid contribution 0.717 -0.434 1.134 1.410 sum -19.676 27.617 2.716 34.018 Atomic orbital electron populations 1.20998 0.91888 1.01899 1.02518 1.22905 0.96488 0.95804 0.87680 1.21095 1.00409 0.92620 1.03989 1.22441 1.01206 0.90463 1.12699 1.18733 0.86494 0.84033 0.75698 1.90772 1.15289 1.87302 1.53289 1.49261 1.08552 1.05809 1.72105 1.21749 0.97338 0.81373 0.98743 1.23613 0.89524 1.03714 1.01756 0.85773 1.22450 0.98238 0.91342 1.00684 0.85101 1.20796 0.87651 0.94256 0.94286 1.45653 1.32519 1.38688 1.19293 1.19940 0.82633 0.79384 0.85982 1.90702 1.70146 1.63533 1.20000 1.23271 0.99010 1.01383 1.02520 1.84740 1.38569 1.47373 1.24560 1.22470 1.16878 1.25796 1.02468 0.91847 1.25543 0.93521 0.95540 1.01284 1.70015 1.18046 1.29471 1.37976 0.85879 0.81445 0.79107 0.80014 1.18714 1.18448 1.16108 1.23950 1.00790 0.91196 1.02064 0.85296 1.22057 0.79308 0.99078 0.98976 0.91800 0.90727 0.91953 0.89070 0.89917 0.89755 0.83188 0.90953 0.89683 0.91690 0.91525 0.74338 0.86700 0.86632 0.91409 0.87824 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 8.33 71.23 0.59 -1.12 16 2 C -0.03 -0.31 6.11 -17.62 -0.11 -0.42 16 3 C -0.12 -0.61 9.99 71.24 0.71 0.10 16 4 C -0.25 -3.21 9.12 23.43 0.21 -2.99 16 5 C 0.56 10.65 7.82 86.57 0.68 11.33 16 6 O -0.58 -15.33 13.37 -4.09 -0.05 -15.38 16 7 N -0.62 -9.28 3.32 -812.11 -2.69 -11.97 16 8 C 0.13 1.84 6.85 86.54 0.59 2.43 16 9 C -0.17 -1.95 6.85 -9.89 -0.07 -2.02 16 10 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 11 C -0.11 -1.12 5.39 -10.79 -0.06 -1.18 16 12 H 0.13 0.97 8.04 -2.39 -0.02 0.95 16 13 C 0.15 2.62 5.95 86.38 0.51 3.14 16 14 N -0.71 -14.15 5.56 -463.05 -2.57 -16.72 16 15 C 0.54 17.05 7.85 87.66 0.69 17.73 16 16 O -0.57 -23.14 15.86 -3.06 -0.05 -23.19 16 17 C -0.11 -3.93 6.16 71.24 0.44 -3.49 16 18 S -0.18 -8.84 18.55 -56.49 -1.05 -9.89 16 19 C -0.53 -30.26 10.04 67.95 0.68 -29.58 16 20 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 21 C 0.05 2.70 5.50 84.85 0.47 3.16 16 22 N -0.92 -55.26 13.97 21.65 0.30 -54.96 16 23 Si 0.91 44.53 27.74 68.60 1.90 46.43 16 24 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.24 -11.55 6.74 99.48 0.67 -10.88 16 27 C -0.16 -1.56 6.75 -9.87 -0.07 -1.63 16 28 H 0.13 1.25 8.12 -2.39 -0.02 1.23 16 29 C 0.13 1.08 6.66 86.55 0.58 1.66 16 30 H 0.06 1.18 7.30 -2.39 -0.02 1.16 16 31 H 0.07 0.73 7.93 -2.38 -0.02 0.71 16 32 H 0.06 1.18 7.16 -2.39 -0.02 1.16 16 33 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.08 0.27 8.03 -2.39 -0.02 0.25 16 35 H 0.08 0.23 8.06 -2.39 -0.02 0.21 16 36 H 0.15 1.10 6.79 -2.91 -0.02 1.08 16 37 H 0.07 1.27 7.88 -2.39 -0.02 1.25 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.24 7.94 -2.39 -0.02 1.22 16 40 H 0.07 1.31 8.14 -2.38 -0.02 1.30 16 41 H 0.42 5.47 8.40 -92.71 -0.78 4.69 16 42 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 43 H 0.12 3.70 8.14 -2.40 -0.02 3.68 16 44 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 45 H 0.10 0.57 6.75 -2.39 -0.02 0.55 16 46 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -79.33 394.42 1.82 -77.51 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.17 Total: 11.05 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 5.86 Total: -2.88 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -4.96 Total: -83.66 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -0.10 Total: -38.57 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.90 Total: 46.43 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -79.33 1.82 -77.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571994113.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.440 kcal (2) G-P(sol) polarization free energy of solvation -79.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds