Wall clock time and date at job start Tue Mar 31 2020 21:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.99852 * 2 1 4 4 C 1.54310 * 109.98353 * 238.97398 * 2 1 3 5 5 H 1.09003 * 110.92690 * 144.62915 * 4 2 1 6 6 C 1.50704 * 110.59368 * 21.30610 * 4 2 1 7 7 C 1.38236 * 119.99808 * 284.95298 * 6 4 2 8 8 C 1.38238 * 119.99958 * 179.74271 * 7 6 4 9 9 C 1.38237 * 119.99638 * 0.54657 * 8 7 6 10 10 C 1.38231 * 120.00381 * 359.70320 * 9 8 7 11 11 C 1.38234 * 119.99805 * 0.02562 * 10 9 8 12 12 C 1.55156 * 102.86380 * 263.04595 * 4 2 1 13 13 C 1.54910 * 101.58124 * 324.30439 * 12 4 2 14 14 N 1.47016 * 109.88324 * 121.09617 * 2 1 3 15 15 S 1.65593 * 125.65077 * 300.51196 * 14 2 1 16 16 O 1.42105 * 106.40525 * 156.17627 * 15 14 2 17 17 O 1.42099 * 106.40504 * 23.25828 * 15 14 2 18 18 N 1.65599 * 107.22017 * 269.71736 * 15 14 2 19 19 C 1.46503 * 119.99999 * 89.99881 * 18 15 14 20 20 C 1.46497 * 119.99951 * 269.99999 * 18 15 14 21 21 C 1.50701 * 109.47178 * 264.99658 * 20 18 15 22 22 H 1.07993 * 119.99907 * 0.02562 * 21 20 18 23 23 C 1.37882 * 119.99757 * 180.02562 * 21 20 18 24 24 N 1.31520 * 119.99754 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00252 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47109 * 90.00283 * 25 23 21 27 27 H 1.48505 * 109.47137 * 210.00226 * 25 23 21 28 28 H 1.48502 * 109.46939 * 329.99758 * 25 23 21 29 29 H 1.09004 * 109.46603 * 305.33034 * 1 2 3 30 30 H 1.08993 * 109.47021 * 65.33226 * 1 2 3 31 31 H 1.08998 * 109.46939 * 185.33564 * 1 2 3 32 32 H 1.07997 * 120.00010 * 359.97438 * 7 6 4 33 33 H 1.07991 * 120.00404 * 180.27336 * 8 7 6 34 34 H 1.08007 * 119.99786 * 179.72317 * 9 8 7 35 35 H 1.07996 * 120.00649 * 179.97438 * 10 9 8 36 36 H 1.08000 * 120.00502 * 179.97438 * 11 10 9 37 37 H 1.09001 * 111.00619 * 206.23098 * 12 4 2 38 38 H 1.09006 * 111.03776 * 82.39344 * 12 4 2 39 39 H 1.09000 * 110.36287 * 278.16922 * 13 12 4 40 40 H 1.08998 * 110.36487 * 155.84429 * 13 12 4 41 41 H 1.09006 * 109.46699 * 270.00240 * 19 18 15 42 42 H 1.09002 * 109.47107 * 150.00411 * 19 18 15 43 43 H 1.09001 * 109.47046 * 30.00227 * 19 18 15 44 44 H 1.08997 * 109.47386 * 25.00054 * 20 18 15 45 45 H 1.09002 * 109.47297 * 144.99623 * 20 18 15 46 46 H 0.96997 * 119.99631 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0574 -0.7475 -1.2427 5 1 2.9707 -0.2848 -1.6169 6 6 1.0034 -0.7965 -2.3187 7 6 -0.0689 -1.6604 -2.1970 8 6 -1.0385 -1.7015 -3.1814 9 6 -0.9299 -0.8870 -4.2930 10 6 0.1451 -0.0268 -4.4172 11 6 1.1117 0.0184 -3.4301 12 6 2.3476 -2.1692 -0.6934 13 6 2.8524 -1.8530 0.7366 14 7 2.0301 -0.7140 1.1839 15 16 1.7159 -0.3101 2.7587 16 8 1.8853 -1.4985 3.5193 17 8 0.5090 0.4399 2.7476 18 7 2.9087 0.7305 3.2453 19 6 2.7377 2.1747 3.0688 20 6 4.1349 0.2068 3.8522 21 6 4.0014 0.2285 5.3532 22 1 3.0938 0.5952 5.8093 23 6 5.0380 -0.2199 6.1440 24 7 4.9213 -0.2014 7.4539 25 14 6.6076 -0.8549 5.3550 26 1 7.5609 0.2693 5.1746 27 1 7.2193 -1.8869 6.2304 28 1 6.2904 -1.4522 4.0329 29 1 -0.3633 0.5943 0.8385 30 1 -0.3633 0.4289 -0.9338 31 1 -0.3633 -1.0232 0.0956 32 1 -0.1511 -2.3004 -1.3310 33 1 -1.8785 -2.3732 -3.0842 34 1 -1.6851 -0.9223 -5.0643 35 1 0.2302 0.6093 -5.2858 36 1 1.9519 0.6901 -3.5273 37 1 3.1212 -2.6645 -1.2802 38 1 1.4386 -2.7700 -0.6629 39 1 3.9060 -1.5746 0.7140 40 1 2.6998 -2.7112 1.3911 41 1 3.1288 2.4705 2.0953 42 1 3.2787 2.7033 3.8537 43 1 1.6783 2.4248 3.1260 44 1 4.2977 -0.8174 3.5167 45 1 4.9810 0.8257 3.5538 46 1 5.6505 -0.5172 8.0102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433757248.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:31 Heat of formation + Delta-G solvation = -35.632145 kcal Electronic energy + Delta-G solvation = -28439.138687 eV Core-core repulsion = 24648.862558 eV Total energy + Delta-G solvation = -3790.276129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.39674 -38.07241 -36.71832 -35.62485 -35.21021 -32.85930 -32.38833 -31.25500 -31.11121 -28.94650 -28.39583 -26.02063 -25.15293 -23.05917 -22.66908 -21.99219 -21.72947 -19.97408 -18.43134 -17.42060 -17.07511 -16.95509 -16.71675 -15.96503 -15.52421 -15.17001 -14.92358 -14.48913 -14.21040 -13.89349 -13.74252 -13.69089 -13.42057 -13.17336 -13.01988 -12.70662 -12.49676 -12.42583 -12.27204 -11.99552 -11.85217 -11.77347 -11.48231 -11.32811 -11.30620 -11.25768 -11.18849 -10.91057 -10.72931 -10.64382 -10.58707 -10.49483 -10.21291 -9.56608 -9.09659 -8.91961 -8.83371 -8.60383 -8.12478 -6.09085 -4.08513 1.03701 1.16856 1.19907 3.24683 3.31560 3.32658 3.41925 3.54444 4.00698 4.33321 4.37189 4.42760 4.55037 4.74664 4.78348 4.91218 4.95177 5.03992 5.13470 5.20457 5.23928 5.27623 5.32414 5.47410 5.53109 5.57679 5.66400 5.74231 5.78018 5.83155 5.85989 5.92087 6.01647 6.04616 6.16994 6.26402 6.31067 6.33760 6.40656 6.44768 6.49033 6.57182 6.71691 6.79023 7.07004 7.39057 7.56870 8.48186 8.95607 9.49723 11.04551 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023346 B = 0.003225 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.048805 B = 8681.287589 C = 9021.856756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.162 3.838 3 H 0.073 0.927 4 C -0.058 4.058 5 H 0.093 0.907 6 C -0.063 4.063 7 C -0.110 4.110 8 C -0.121 4.121 9 C -0.126 4.126 10 C -0.121 4.121 11 C -0.117 4.117 12 C -0.123 4.123 13 C 0.115 3.885 14 N -1.020 6.020 15 S 2.793 3.207 16 O -0.958 6.958 17 O -0.984 6.984 18 N -0.991 5.991 19 C 0.095 3.905 20 C 0.228 3.772 21 C -0.532 4.532 22 H 0.077 0.923 23 C 0.073 3.927 24 N -0.895 5.895 25 Si 0.874 3.126 26 H -0.275 1.275 27 H -0.283 1.283 28 H -0.265 1.265 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.038 0.962 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.032 0.968 45 H 0.028 0.972 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.765 -0.581 -25.162 26.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.056 3.944 3 H 0.091 0.909 4 C -0.078 4.078 5 H 0.111 0.889 6 C -0.064 4.064 7 C -0.127 4.127 8 C -0.139 4.139 9 C -0.144 4.144 10 C -0.139 4.139 11 C -0.135 4.135 12 C -0.162 4.162 13 C -0.011 4.011 14 N -0.858 5.858 15 S 2.803 3.197 16 O -0.942 6.942 17 O -0.969 6.969 18 N -0.833 5.833 19 C -0.052 4.052 20 C 0.104 3.896 21 C -0.571 4.571 22 H 0.095 0.905 23 C -0.130 4.130 24 N -0.533 5.533 25 Si 0.701 3.299 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.189 1.189 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.050 0.950 45 H 0.046 0.954 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.390 -0.901 -24.338 25.451 hybrid contribution 1.265 -0.135 -0.434 1.344 sum -6.125 -1.036 -24.772 25.539 Atomic orbital electron populations 1.22697 0.94677 1.03152 1.03683 1.21120 0.94455 0.95121 0.83745 0.90926 1.21286 0.96816 0.97031 0.92621 0.88915 1.19600 0.95707 0.96266 0.94790 1.21191 0.93977 0.98801 0.98761 1.21144 0.98998 0.99464 0.94285 1.21131 0.98283 0.96862 0.98129 1.21105 0.94704 0.99094 0.98968 1.21048 0.99394 0.99200 0.93874 1.22942 1.02147 0.95801 0.95263 1.22002 0.94670 0.88952 0.95428 1.59508 1.64434 1.39202 1.22659 1.01648 0.73143 0.73411 0.71474 1.93626 1.86277 1.47127 1.67151 1.93501 1.43877 1.72989 1.86501 1.57483 1.35759 1.16091 1.73926 1.21379 1.02029 0.80949 1.00815 1.19427 0.81752 0.93800 0.94606 1.21377 1.03625 1.43228 0.88881 0.90467 1.24881 0.98432 0.94980 0.94724 1.69899 1.32866 1.46963 1.03572 0.86890 0.83799 0.79294 0.79952 1.20035 1.20824 1.18921 0.89537 0.91437 0.92157 0.85628 0.86182 0.86385 0.86260 0.86080 0.89888 0.90186 0.91471 0.89743 0.94311 0.90164 0.91274 0.95002 0.95411 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 7.52 37.16 0.28 -2.04 16 2 C 0.16 1.98 3.63 -66.96 -0.24 1.74 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.06 -0.56 3.14 -89.94 -0.28 -0.84 16 5 H 0.09 0.78 8.05 -51.93 -0.42 0.37 16 6 C -0.06 -0.59 3.62 -104.62 -0.38 -0.96 16 7 C -0.11 -1.01 6.76 -39.58 -0.27 -1.28 16 8 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 9 C -0.13 -0.99 10.05 -39.58 -0.40 -1.39 16 10 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 11 C -0.12 -0.99 9.69 -39.58 -0.38 -1.37 16 12 C -0.12 -1.18 6.38 -24.58 -0.16 -1.34 16 13 C 0.12 1.47 7.11 -2.53 -0.02 1.45 16 14 N -1.02 -15.27 3.47 -104.42 -0.36 -15.63 16 15 S 2.79 55.61 6.27 -107.50 -0.67 54.93 16 16 O -0.96 -22.93 16.43 -57.17 -0.94 -23.87 16 17 O -0.98 -20.15 13.85 -57.17 -0.79 -20.94 16 18 N -0.99 -20.40 3.23 -123.05 -0.40 -20.79 16 19 C 0.09 1.61 10.68 59.85 0.64 2.25 16 20 C 0.23 5.39 4.15 -5.19 -0.02 5.37 16 21 C -0.53 -15.30 9.94 -34.44 -0.34 -15.64 16 22 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 23 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 24 N -0.89 -27.63 13.96 55.43 0.77 -26.86 16 25 Si 0.87 21.06 27.47 -169.99 -4.67 16.39 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 28 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 29 H 0.09 1.29 5.94 -51.93 -0.31 0.98 16 30 H 0.07 0.76 6.44 -51.93 -0.33 0.42 16 31 H 0.06 0.74 6.39 -51.93 -0.33 0.41 16 32 H 0.13 1.14 5.32 -52.49 -0.28 0.86 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.12 0.84 8.05 -52.49 -0.42 0.42 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.15 7.78 -51.93 -0.40 0.75 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 1.40 8.07 -51.93 -0.42 0.99 16 43 H 0.07 1.13 7.02 -51.93 -0.36 0.77 16 44 H 0.03 0.76 6.67 -51.93 -0.35 0.42 16 45 H 0.03 0.62 7.54 -51.93 -0.39 0.23 16 46 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 369.93 15.07 5.57 5.57 Total: -1.00 -34.71 369.93 -10.83 -45.54 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.88 Total: 0.45 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -2.46 Total: -14.80 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: 0.01 Total: -63.28 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -1.73 Total: -44.80 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 16 Polarization: 55.61 SS G_CDS: -0.67 Total: 54.93 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.71 -10.83 -45.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433757248.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.906 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds